CsaV3_3G020670 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G020670
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr3: 16865602 .. 16866855 (-)
RNA-Seq ExpressionCsaV3_3G020670
SyntenyCsaV3_3G020670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAACAATGGCAATGCTATGGGTACAACACAACCACTCATTCTAATCTTCAAAGGAGAAGGCTACGAGTTTTGGAGTATGCGTATGAAGACTCTTCTCAGATCTCAAGACTTATGGGACTTAGTAGAACACAACTATGCGGATCCTGACGACGAAGGCAAGTTGCGGGAGAAGAGGAGAAAGGACTCTAAGGCGTTAGTGATTATTCAACAAGCAGTCCATGACAGTGGTTTTTCGCGGATTGGTACAACAACAACGTCAAAAGAAGCGTGGCTGATTTTGCAAAAGGCATTTCGAGGAGATTTAAGAGTACTTGTGGTAAAATTGCAATCACTTAGAAAAGAATTTGAGACCTTGATGATGAAAAATAGAGAATCAATTGCTAATTTTTTGTCACGGGCAACGACAATTATTAGTCAGATGCAAACATACGGCGAGACGATTACAGATCAGACTATAGTGGAGAAAGTATTGAGAAGTTTGACTCTAAAGTTCGATCAAGTTGTGGCCGCAATAGAAGAATCAAAGGATCTGTCCACTTTCACATTTATTGAATTAATGGGATCTCTTCAAGCACATGAGTCAAGAATCAATAGATCGATGGAAAGAAACGAAGAAAAAGCGTTTCAGGTAAAGGATGTAGTTCCAAAGTATAATAACAGTGATCGTGTGATGACTCGAGGCAGAGGAAGAGGAGGATATCGTGGTCAAGGTCGTGGAACTGAAAAAGGATGCAAACAAAATGAAGAAAAAGGGCAGTTCAGAGTGCAATCAAGCAACAAAGCTAATATTCAATGCTACCATGGCAAGAAGTTTGGTCATGTAAAGGCAGACTGTTGGTACAAAAATCAGCGAGCCAATTTTTCAGCAGAGAATGAAGCATAAGAGAATAATGGAAAGGATGAAAATAAGTTGTTTATGGCAAACGTCACTAGTGATCAAAAGACAGCGGAGGTGTGTTTCATTGATAGCGGGTGTTCGAATCACATGACAGGCTTGAAGCCTATATTCAATGAGCTTAACGAAGGAGAAAAGTTGAAGGTGGAACTTGGAAACAACAAGGAGCTACAAGTAGAACGCAAAGGAACGGTTGGAATTGAAACTCACCATGGAAATAGAATTCTCACAAATGTTCAGTATGTGCCCGATATTGGATATAATTTGCTGAGTGTTGGACAGCTAATGGAGAGTGGGCATTCTATCTTGTTTGATGATGGTGCGTGCTTGATAAAAAATAAGCAAACATTATGA

mRNA sequence

ATGGACAACAATGGCAATGCTATGGGTACAACACAACCACTCATTCTAATCTTCAAAGGAGAAGGCTACGAGTTTTGGAGTATGCGTATGAAGACTCTTCTCAGATCTCAAGACTTATGGGACTTAGTAGAACACAACTATGCGGATCCTGACGACGAAGGCAAGTTGCGGGAGAAGAGGAGAAAGGACTCTAAGGCGTTAGTGATTATTCAACAAGCAGTCCATGACAGTGGTTTTTCGCGGATTGGTACAACAACAACGTCAAAAGAAGCGTGGCTGATTTTGCAAAAGGCATTTCGAGGAGATTTAAGAGTACTTGTGGTAAAATTGCAATCACTTAGAAAAGAATTTGAGACCTTGATGATGAAAAATAGAGAATCAATTGCTAATTTTTTGTCACGGGCAACGACAATTATTAGTCAGATGCAAACATACGGCGAGACGATTACAGATCAGACTATAGTGGAGAAAGTATTGAGAAGTTTGACTCTAAAGTTCGATCAAGTTGTGGCCGCAATAGAAGAATCAAAGGATCTGTCCACTTTCACATTTATTGAATTAATGGGATCTCTTCAAGCACATGAGTCAAGAATCAATAGATCGATGGAAAGAAACGAAGAAAAAGCGTTTCAGGTAAAGGATGTAGTTCCAAAGTATAATAACAGTGATCGTGTGATGACTCGAGGCAGAGGAAGAGGAGGATATCGTGGTCAAGGTCGTGGAACTGAAAAAGGATGCAAACAAAATGAAGAAAAAGGGCAGTTCAGAGTGCAATCAAGCAACAAAGCTAATATTCAATGCTACCATGGCAAGAAGTTTGGTCATGTAAAGGCAGACTGTTGTGATCAAAAGACAGCGGAGGTGTGTTTCATTGATAGCGGGTGTTCGAATCACATGACAGGCTTGAAGCCTATATTCAATGAGCTTAACGAAGGAGAAAAGTTGAAGGTGGAACTTGGAAACAACAAGGAGCTACAAGTAGAACGCAAAGGAACGGTTGGAATTGAAACTCACCATGGAAATAGAATTCTCACAAATGTTCAGTATGTGCCCGATATTGGATATAATTTGCTGAGTGTTGGACAGCTAATGGAGAGTGGGCATTCTATCTTGTTTGATGATGGTGCGTGCTTGATAAAAAATAAGCAAACATTATGA

Coding sequence (CDS)

ATGGACAACAATGGCAATGCTATGGGTACAACACAACCACTCATTCTAATCTTCAAAGGAGAAGGCTACGAGTTTTGGAGTATGCGTATGAAGACTCTTCTCAGATCTCAAGACTTATGGGACTTAGTAGAACACAACTATGCGGATCCTGACGACGAAGGCAAGTTGCGGGAGAAGAGGAGAAAGGACTCTAAGGCGTTAGTGATTATTCAACAAGCAGTCCATGACAGTGGTTTTTCGCGGATTGGTACAACAACAACGTCAAAAGAAGCGTGGCTGATTTTGCAAAAGGCATTTCGAGGAGATTTAAGAGTACTTGTGGTAAAATTGCAATCACTTAGAAAAGAATTTGAGACCTTGATGATGAAAAATAGAGAATCAATTGCTAATTTTTTGTCACGGGCAACGACAATTATTAGTCAGATGCAAACATACGGCGAGACGATTACAGATCAGACTATAGTGGAGAAAGTATTGAGAAGTTTGACTCTAAAGTTCGATCAAGTTGTGGCCGCAATAGAAGAATCAAAGGATCTGTCCACTTTCACATTTATTGAATTAATGGGATCTCTTCAAGCACATGAGTCAAGAATCAATAGATCGATGGAAAGAAACGAAGAAAAAGCGTTTCAGGTAAAGGATGTAGTTCCAAAGTATAATAACAGTGATCGTGTGATGACTCGAGGCAGAGGAAGAGGAGGATATCGTGGTCAAGGTCGTGGAACTGAAAAAGGATGCAAACAAAATGAAGAAAAAGGGCAGTTCAGAGTGCAATCAAGCAACAAAGCTAATATTCAATGCTACCATGGCAAGAAGTTTGGTCATGTAAAGGCAGACTGTTGTGATCAAAAGACAGCGGAGGTGTGTTTCATTGATAGCGGGTGTTCGAATCACATGACAGGCTTGAAGCCTATATTCAATGAGCTTAACGAAGGAGAAAAGTTGAAGGTGGAACTTGGAAACAACAAGGAGCTACAAGTAGAACGCAAAGGAACGGTTGGAATTGAAACTCACCATGGAAATAGAATTCTCACAAATGTTCAGTATGTGCCCGATATTGGATATAATTTGCTGAGTGTTGGACAGCTAATGGAGAGTGGGCATTCTATCTTGTTTGATGATGGTGCGTGCTTGATAAAAAATAAGCAAACATTATGA

Protein sequence

MDNNGNAMGTTQPLILIFKGEGYEFWSMRMKTLLRSQDLWDLVEHNYADPDDEGKLREKRRKDSKALVIIQQAVHDSGFSRIGTTTTSKEAWLILQKAFRGDLRVLVVKLQSLRKEFETLMMKNRESIANFLSRATTIISQMQTYGETITDQTIVEKVLRSLTLKFDQVVAAIEESKDLSTFTFIELMGSLQAHESRINRSMERNEEKAFQVKDVVPKYNNSDRVMTRGRGRGGYRGQGRGTEKGCKQNEEKGQFRVQSSNKANIQCYHGKKFGHVKADCCDQKTAEVCFIDSGCSNHMTGLKPIFNELNEGEKLKVELGNNKELQVERKGTVGIETHHGNRILTNVQYVPDIGYNLLSVGQLMESGHSILFDDGACLIKNKQTL*
Homology
BLAST of CsaV3_3G020670 vs. NCBI nr
Match: KAE8650579.1 (hypothetical protein Csa_010963 [Cucumis sativus])

HSP 1 Score: 762.7 bits (1968), Expect = 1.5e-216
Identity = 385/385 (100.00%), Postives = 385/385 (100.00%), Query Frame = 0

Query: 1   MDNNGNAMGTTQPLILIFKGEGYEFWSMRMKTLLRSQDLWDLVEHNYADPDDEGKLREKR 60
           MDNNGNAMGTTQPLILIFKGEGYEFWSMRMKTLLRSQDLWDLVEHNYADPDDEGKLREKR
Sbjct: 1   MDNNGNAMGTTQPLILIFKGEGYEFWSMRMKTLLRSQDLWDLVEHNYADPDDEGKLREKR 60

Query: 61  RKDSKALVIIQQAVHDSGFSRIGTTTTSKEAWLILQKAFRGDLRVLVVKLQSLRKEFETL 120
           RKDSKALVIIQQAVHDSGFSRIGTTTTSKEAWLILQKAFRGDLRVLVVKLQSLRKEFETL
Sbjct: 61  RKDSKALVIIQQAVHDSGFSRIGTTTTSKEAWLILQKAFRGDLRVLVVKLQSLRKEFETL 120

Query: 121 MMKNRESIANFLSRATTIISQMQTYGETITDQTIVEKVLRSLTLKFDQVVAAIEESKDLS 180
           MMKNRESIANFLSRATTIISQMQTYGETITDQTIVEKVLRSLTLKFDQVVAAIEESKDLS
Sbjct: 121 MMKNRESIANFLSRATTIISQMQTYGETITDQTIVEKVLRSLTLKFDQVVAAIEESKDLS 180

Query: 181 TFTFIELMGSLQAHESRINRSMERNEEKAFQVKDVVPKYNNSDRVMTRGRGRGGYRGQGR 240
           TFTFIELMGSLQAHESRINRSMERNEEKAFQVKDVVPKYNNSDRVMTRGRGRGGYRGQGR
Sbjct: 181 TFTFIELMGSLQAHESRINRSMERNEEKAFQVKDVVPKYNNSDRVMTRGRGRGGYRGQGR 240

Query: 241 GTEKGCKQNEEKGQFRVQSSNKANIQCYHGKKFGHVKADCCDQKTAEVCFIDSGCSNHMT 300
           GTEKGCKQNEEKGQFRVQSSNKANIQCYHGKKFGHVKADCCDQKTAEVCFIDSGCSNHMT
Sbjct: 241 GTEKGCKQNEEKGQFRVQSSNKANIQCYHGKKFGHVKADCCDQKTAEVCFIDSGCSNHMT 300

Query: 301 GLKPIFNELNEGEKLKVELGNNKELQVERKGTVGIETHHGNRILTNVQYVPDIGYNLLSV 360
           GLKPIFNELNEGEKLKVELGNNKELQVERKGTVGIETHHGNRILTNVQYVPDIGYNLLSV
Sbjct: 301 GLKPIFNELNEGEKLKVELGNNKELQVERKGTVGIETHHGNRILTNVQYVPDIGYNLLSV 360

Query: 361 GQLMESGHSILFDDGACLIKNKQTL 386
           GQLMESGHSILFDDGACLIKNKQTL
Sbjct: 361 GQLMESGHSILFDDGACLIKNKQTL 385

BLAST of CsaV3_3G020670 vs. NCBI nr
Match: TYK27735.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 585.5 bits (1508), Expect = 3.4e-163
Identity = 310/387 (80.10%), Postives = 327/387 (84.50%), Query Frame = 0

Query: 30  MKTLLRSQDLWDLVEHNYADPDDEGKLREKRRKDSKALVIIQQAVHDSGFSRIGTTTTSK 89
           +KTLLRSQDLWDLVE  Y DPDDEGKLRE R+KDSKALVIIQQAVHDS FSRI T TTSK
Sbjct: 117 VKTLLRSQDLWDLVEQGYVDPDDEGKLRENRKKDSKALVIIQQAVHDSVFSRIATATTSK 176

Query: 90  EAWLILQKAFRGDLRVLVVKLQSLRKEFETLMMKNRESIANFLSRATTIISQMQTYGETI 149
           +AWLILQKAF+GD RVL+VKLQSLR++FETLMMKN ESIA+FLSRATTIISQMQTYGETI
Sbjct: 177 QAWLILQKAFQGDSRVLMVKLQSLRRDFETLMMKNGESIADFLSRATTIISQMQTYGETI 236

Query: 150 TDQTIVEKVLRSLTLKFDQVVAAIEESKDLSTFTFIELMGSLQAHESRINRSMERNEEKA 209
            DQTIVEKVLRSLT KFD VVAAIEESK+L TFTFIELMGSL+AHESRINRSMERNEEKA
Sbjct: 237 KDQTIVEKVLRSLTPKFDHVVAAIEESKNLFTFTFIELMGSLEAHESRINRSMERNEEKA 296

Query: 210 FQVKDVVPKYNNSDRVMTRGRGRGGYRGQGRGTEKGCKQNEEKGQFRVQSSNKANIQCYH 269
           FQVKD VPKYN+SDRVMTRGRGRGGYRG+G GTEKGC +NE + QF VQSSNKANIQCYH
Sbjct: 297 FQVKDAVPKYNDSDRVMTRGRGRGGYRGRGHGTEKGCNRNEAQRQFGVQSSNKANIQCYH 356

Query: 270 GKKFGHVKADC--------------------------------CDQKTAEVCFIDSGCSN 329
            KKFGHVKADC                                 DQKTAEV FIDS CSN
Sbjct: 357 CKKFGHVKADCWYKNQRANFAAENEASENNGNCENKLFMTNIPSDQKTAEVWFIDSSCSN 416

Query: 330 HMTGLKPIFNELNEGEKLKVELGNNKELQVERKGTVGIETHHGNRILTNVQYVPDIGYNL 385
           HMTGLKP+F ELNEGEKLKV+L N KELQVE KGTV IETHHGNRILTNVQYVPDIGYNL
Sbjct: 417 HMTGLKPVFKELNEGEKLKVKLRNGKELQVEGKGTVVIETHHGNRILTNVQYVPDIGYNL 476

BLAST of CsaV3_3G020670 vs. NCBI nr
Match: TYK28117.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 561.6 bits (1446), Expect = 5.2e-156
Identity = 304/416 (73.08%), Postives = 320/416 (76.92%), Query Frame = 0

Query: 1   MDNNGNAMGTTQPLILIFKGEGYEFWSMRMKTLLRSQDLWDLVEHNYADPDDEGKLREKR 60
           M NNGN MGT QPLI IFKGEGYEFWS+RMKTLL SQDLWDLVE  Y DPDDEGKL+E R
Sbjct: 1   MSNNGNVMGTAQPLIPIFKGEGYEFWSIRMKTLLISQDLWDLVEQGYTDPDDEGKLQENR 60

Query: 61  RKDSKALVIIQQAVHDSGFSRIGTTTTSKEAWLILQKAFRGDLRVLVVKLQSLRKEFETL 120
            KDSKALVIIQQAVHD+ FSRI   TT                           ++FETL
Sbjct: 61  EKDSKALVIIQQAVHDNVFSRIAAATT---------------------------RDFETL 120

Query: 121 MMKNRESIANFLSRATTIISQMQTYGETITDQTIVEKVLRSLTLKFDQVVAAIEESKDLS 180
           MMKN ESIA+FLSRATTIISQMQTYGETITDQTIVEKVLRSLT KFD VV AIEESKDLS
Sbjct: 121 MMKNGESIADFLSRATTIISQMQTYGETITDQTIVEKVLRSLTPKFDHVVVAIEESKDLS 180

Query: 181 TFTFIELMGSLQAHESRINRSMERNEEKAFQVKDVVPKYNNSDRVMTRGRGRGGYRGQGR 240
           TFTFIELMGSLQAHESRIN SME+NEEKAF+VKDVVPKYN+SD VMT+G+G GGYR +GR
Sbjct: 181 TFTFIELMGSLQAHESRINISMEKNEEKAFKVKDVVPKYNDSDCVMTQGQGSGGYRSRGR 240

Query: 241 GTEKGCKQNEEKGQFRVQSSNKANIQCYHGKKFGHVKADC-------------------- 300
           GT KGC QNEE+ QF VQSSNKANIQCYH KKFGHVKADC                    
Sbjct: 241 GTGKGCNQNEEQRQFGVQSSNKANIQCYHCKKFGHVKADCWYKNHRANFTEQNEASENNG 300

Query: 301 ------------CDQKTAEVCFIDSGCSNHMTGLKPIFNELNEGEKLKVELGNNKELQVE 360
                        DQKT EV FIDSG  NHMT LKP+F ELNEGEKLKVELGN KELQVE
Sbjct: 301 NGENKLFMTNIPSDQKTTEVWFIDSGHLNHMTDLKPVFKELNEGEKLKVELGNGKELQVE 360

Query: 361 RKGTVGIETHHGNRILTNVQYVPDIGYNLLSVGQLMESGHSILFDDGACLIKNKQT 385
            K T+GIETH+GNRILTNVQYVPDIGYNLLSVGQLMESGHSILFDDGACLIKNKQT
Sbjct: 361 GKRTMGIETHNGNRILTNVQYVPDIGYNLLSVGQLMESGHSILFDDGACLIKNKQT 389

BLAST of CsaV3_3G020670 vs. NCBI nr
Match: XP_031738054.1 (uncharacterized protein LOC116402652 [Cucumis sativus])

HSP 1 Score: 546.6 bits (1407), Expect = 1.7e-151
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 0

Query: 1   MDNNGNAMGTTQPLILIFKGEGYEFWSMRMKTLLRSQDLWDLVEHNYADPDDEGKLREKR 60
           MDNNGNAMGTTQPLILIFKGEGYEFWSMRMKTLLRSQDLWDLVEHNYADPDDEGKLREKR
Sbjct: 1   MDNNGNAMGTTQPLILIFKGEGYEFWSMRMKTLLRSQDLWDLVEHNYADPDDEGKLREKR 60

Query: 61  RKDSKALVIIQQAVHDSGFSRIGTTTTSKEAWLILQKAFRGDLRVLVVKLQSLRKEFETL 120
           RKDSKALVIIQQAVHDSGFSRIGTTTTSKEAWLILQKAFRGDLRVLVVKLQSLRKEFETL
Sbjct: 61  RKDSKALVIIQQAVHDSGFSRIGTTTTSKEAWLILQKAFRGDLRVLVVKLQSLRKEFETL 120

Query: 121 MMKNRESIANFLSRATTIISQMQTYGETITDQTIVEKVLRSLTLKFDQVVAAIEESKDLS 180
           MMKNRESIANFLSRATTIISQMQTYGETITDQTIVEKVLRSLTLKFDQVVAAIEESKDLS
Sbjct: 121 MMKNRESIANFLSRATTIISQMQTYGETITDQTIVEKVLRSLTLKFDQVVAAIEESKDLS 180

Query: 181 TFTFIELMGSLQAHESRINRSMERNEEKAFQVKDVVPKYNNSDRVMTRGRGRGGYRGQGR 240
           TFTFIELMGSLQAHESRINRSMERNEEKAFQVKDVVPKYNNSDRVMTRGRGRGGYRGQGR
Sbjct: 181 TFTFIELMGSLQAHESRINRSMERNEEKAFQVKDVVPKYNNSDRVMTRGRGRGGYRGQGR 240

Query: 241 GTEKGCKQNEEKGQFRVQSSNKANIQCYHGKKFGHVKADC 281
           GTEKGCKQNEEKGQFRVQSSNKANIQCYHGKKFGHVKADC
Sbjct: 241 GTEKGCKQNEEKGQFRVQSSNKANIQCYHGKKFGHVKADC 280

BLAST of CsaV3_3G020670 vs. NCBI nr
Match: KAA0055915.1 (copia protein [Cucumis melo var. makuwa])

HSP 1 Score: 544.7 bits (1402), Expect = 6.6e-151
Identity = 290/380 (76.32%), Postives = 312/380 (82.11%), Query Frame = 0

Query: 1   MDNNGNAMGTTQPLILIFKGEGYEFWSMRMKTLLRSQDLWDLVEHNYADPDDEGKLREKR 60
           M NNGN MGTTQPLI IFKGEGYEFWS+RMKTLL SQDLWDLVE  Y DPDDEGKL+E R
Sbjct: 1   MSNNGNVMGTTQPLIPIFKGEGYEFWSIRMKTLLISQDLWDLVEQGYTDPDDEGKLQENR 60

Query: 61  RKDSKALVIIQQAVHDSGFSRIGTTTTSKEAWLILQKAFRGDLRVLVVKLQSLRKEFETL 120
            KD KALVI+QQAVHD+ FSRI   TTSK+AWLILQKAF+GD RVLVVKLQSL+++FETL
Sbjct: 61  EKDPKALVIVQQAVHDNVFSRIAAATTSKQAWLILQKAFQGDSRVLVVKLQSLKRDFETL 120

Query: 121 MMKNRESIANFLSRATTIISQMQTYGETITDQTIVEKVLRSLTLKFDQVVAAIEESKDLS 180
           MMKN ESIA+FLSRATTIISQMQTYGETITDQTIVEKVLRSLT KFD VVAAIEESKDLS
Sbjct: 121 MMKNGESIADFLSRATTIISQMQTYGETITDQTIVEKVLRSLTPKFDHVVAAIEESKDLS 180

Query: 181 TFTFIELMGSLQAHESRINRSMERNEEKAFQVKDVVPKYNNSDRVMTRGRGRGGYRGQGR 240
           TFTFIELMGSLQAHESRIN SME+N+EKAF+VKDVVPKYN+SD VMT+G+G GGYR +GR
Sbjct: 181 TFTFIELMGSLQAHESRINISMEKNKEKAFKVKDVVPKYNDSDCVMTQGQGSGGYRSRGR 240

Query: 241 GTEKGCKQNEEKGQFRVQSSNKANIQCYHGKKFGHVKADC-------------------- 300
           GT KGC QNEE+ QF VQSSNKANIQCYH KKFGHVKADC                    
Sbjct: 241 GTGKGCNQNEEQRQFGVQSSNKANIQCYHCKKFGHVKADCWYKNQRANFTEQNEASENNG 300

Query: 301 ------------CDQKTAEVCFIDSGCSNHMTGLKPIFNELNEGEKLKVELGNNKELQVE 349
                        DQKT EV FIDSG  NHMTGLKP+F ELNEGEKLKVELGN+KELQVE
Sbjct: 301 KGENKLFMINIPSDQKTTEVWFIDSGHLNHMTGLKPVFKELNEGEKLKVELGNSKELQVE 360

BLAST of CsaV3_3G020670 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 57.4 bits (137), Expect = 4.2e-07
Identity = 87/404 (21.53%), Postives = 161/404 (39.85%), Query Frame = 0

Query: 18  FKGEGYEFWSMRMKTLLRSQDLWDLVEHNYA-DPDDEGKLREKRRKDSKALVIIQQAVHD 77
           F GE Y  W  R++ LL  QD+  +V+     + DD  K  E+  K +     I + + D
Sbjct: 11  FDGEKYAIWKFRIRALLAEQDVLKVVDGLMPNEVDDSWKKAERCAKST-----IIEYLSD 70

Query: 78  SGFSRIGTTTTSKEAWLILQKAFRGDLRVLVVKLQSLRKEFETLMMKNRESIANFLSRAT 137
           S  +   +  T+++    L   +    R  +    +LRK   +L + +  S+ +      
Sbjct: 71  SFLNFATSDITARQILENLDAVYE---RKSLASQLALRKRLLSLKLSSEMSLLSHFHIFD 130

Query: 138 TIISQMQTYGETITDQTIVEKVLRSLTLKFDQVVAAIEE-SKDLSTFTFIELMGSLQAHE 197
            +IS++   G  I +   +  +L +L   +D ++ AIE  S++  T  F++    L   E
Sbjct: 131 ELISELLAAGAKIEEMDKISHLLITLPSCYDGIITAIETLSEENLTLAFVK--NRLLDQE 190

Query: 198 SRINRSMERNEEKAFQVKDVVPKYNNSDRVMTRGRGRGGYRGQGRGTEKGCKQNEEKGQF 257
            +I    + N+     +  +V   NN+ +                      K    K + 
Sbjct: 191 IKIKN--DHNDTSKKVMNAIVHNNNNTYK------------------NNLFKNRVTKPKK 250

Query: 258 RVQSSNKANIQCYHGKKFGHVKADCCDQK------------------------------- 317
             + ++K  ++C+H  + GH+K DC   K                               
Sbjct: 251 IFKGNSKYKVKCHHCGREGHIKKDCFHYKRILNNKNKENEKQVQTATSHGIAFMVKEVNN 310

Query: 318 --TAEVC--FIDSGCSNHMTGLKPIFNELNE-GEKLKVELGNNKE-LQVERKGTVGIETH 377
               + C   +DSG S+H+   + ++ +  E    LK+ +    E +   ++G V +   
Sbjct: 311 TSVMDNCGFVLDSGASDHLINDESLYTDSVEVVPPLKIAVAKQGEFIYATKRGIVRLRND 370

Query: 378 HGNRILTNVQYVPDIGYNLLSVGQLMESGHSILFD-DGACLIKN 382
           H    L +V +  +   NL+SV +L E+G SI FD  G  + KN
Sbjct: 371 H-EITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKN 383

BLAST of CsaV3_3G020670 vs. ExPASy TrEMBL
Match: A0A5D3DWP2 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00850 PE=4 SV=1)

HSP 1 Score: 585.5 bits (1508), Expect = 1.6e-163
Identity = 310/387 (80.10%), Postives = 327/387 (84.50%), Query Frame = 0

Query: 30  MKTLLRSQDLWDLVEHNYADPDDEGKLREKRRKDSKALVIIQQAVHDSGFSRIGTTTTSK 89
           +KTLLRSQDLWDLVE  Y DPDDEGKLRE R+KDSKALVIIQQAVHDS FSRI T TTSK
Sbjct: 117 VKTLLRSQDLWDLVEQGYVDPDDEGKLRENRKKDSKALVIIQQAVHDSVFSRIATATTSK 176

Query: 90  EAWLILQKAFRGDLRVLVVKLQSLRKEFETLMMKNRESIANFLSRATTIISQMQTYGETI 149
           +AWLILQKAF+GD RVL+VKLQSLR++FETLMMKN ESIA+FLSRATTIISQMQTYGETI
Sbjct: 177 QAWLILQKAFQGDSRVLMVKLQSLRRDFETLMMKNGESIADFLSRATTIISQMQTYGETI 236

Query: 150 TDQTIVEKVLRSLTLKFDQVVAAIEESKDLSTFTFIELMGSLQAHESRINRSMERNEEKA 209
            DQTIVEKVLRSLT KFD VVAAIEESK+L TFTFIELMGSL+AHESRINRSMERNEEKA
Sbjct: 237 KDQTIVEKVLRSLTPKFDHVVAAIEESKNLFTFTFIELMGSLEAHESRINRSMERNEEKA 296

Query: 210 FQVKDVVPKYNNSDRVMTRGRGRGGYRGQGRGTEKGCKQNEEKGQFRVQSSNKANIQCYH 269
           FQVKD VPKYN+SDRVMTRGRGRGGYRG+G GTEKGC +NE + QF VQSSNKANIQCYH
Sbjct: 297 FQVKDAVPKYNDSDRVMTRGRGRGGYRGRGHGTEKGCNRNEAQRQFGVQSSNKANIQCYH 356

Query: 270 GKKFGHVKADC--------------------------------CDQKTAEVCFIDSGCSN 329
            KKFGHVKADC                                 DQKTAEV FIDS CSN
Sbjct: 357 CKKFGHVKADCWYKNQRANFAAENEASENNGNCENKLFMTNIPSDQKTAEVWFIDSSCSN 416

Query: 330 HMTGLKPIFNELNEGEKLKVELGNNKELQVERKGTVGIETHHGNRILTNVQYVPDIGYNL 385
           HMTGLKP+F ELNEGEKLKV+L N KELQVE KGTV IETHHGNRILTNVQYVPDIGYNL
Sbjct: 417 HMTGLKPVFKELNEGEKLKVKLRNGKELQVEGKGTVVIETHHGNRILTNVQYVPDIGYNL 476

BLAST of CsaV3_3G020670 vs. ExPASy TrEMBL
Match: A0A5D3DWC7 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00230 PE=4 SV=1)

HSP 1 Score: 561.6 bits (1446), Expect = 2.5e-156
Identity = 304/416 (73.08%), Postives = 320/416 (76.92%), Query Frame = 0

Query: 1   MDNNGNAMGTTQPLILIFKGEGYEFWSMRMKTLLRSQDLWDLVEHNYADPDDEGKLREKR 60
           M NNGN MGT QPLI IFKGEGYEFWS+RMKTLL SQDLWDLVE  Y DPDDEGKL+E R
Sbjct: 1   MSNNGNVMGTAQPLIPIFKGEGYEFWSIRMKTLLISQDLWDLVEQGYTDPDDEGKLQENR 60

Query: 61  RKDSKALVIIQQAVHDSGFSRIGTTTTSKEAWLILQKAFRGDLRVLVVKLQSLRKEFETL 120
            KDSKALVIIQQAVHD+ FSRI   TT                           ++FETL
Sbjct: 61  EKDSKALVIIQQAVHDNVFSRIAAATT---------------------------RDFETL 120

Query: 121 MMKNRESIANFLSRATTIISQMQTYGETITDQTIVEKVLRSLTLKFDQVVAAIEESKDLS 180
           MMKN ESIA+FLSRATTIISQMQTYGETITDQTIVEKVLRSLT KFD VV AIEESKDLS
Sbjct: 121 MMKNGESIADFLSRATTIISQMQTYGETITDQTIVEKVLRSLTPKFDHVVVAIEESKDLS 180

Query: 181 TFTFIELMGSLQAHESRINRSMERNEEKAFQVKDVVPKYNNSDRVMTRGRGRGGYRGQGR 240
           TFTFIELMGSLQAHESRIN SME+NEEKAF+VKDVVPKYN+SD VMT+G+G GGYR +GR
Sbjct: 181 TFTFIELMGSLQAHESRINISMEKNEEKAFKVKDVVPKYNDSDCVMTQGQGSGGYRSRGR 240

Query: 241 GTEKGCKQNEEKGQFRVQSSNKANIQCYHGKKFGHVKADC-------------------- 300
           GT KGC QNEE+ QF VQSSNKANIQCYH KKFGHVKADC                    
Sbjct: 241 GTGKGCNQNEEQRQFGVQSSNKANIQCYHCKKFGHVKADCWYKNHRANFTEQNEASENNG 300

Query: 301 ------------CDQKTAEVCFIDSGCSNHMTGLKPIFNELNEGEKLKVELGNNKELQVE 360
                        DQKT EV FIDSG  NHMT LKP+F ELNEGEKLKVELGN KELQVE
Sbjct: 301 NGENKLFMTNIPSDQKTTEVWFIDSGHLNHMTDLKPVFKELNEGEKLKVELGNGKELQVE 360

Query: 361 RKGTVGIETHHGNRILTNVQYVPDIGYNLLSVGQLMESGHSILFDDGACLIKNKQT 385
            K T+GIETH+GNRILTNVQYVPDIGYNLLSVGQLMESGHSILFDDGACLIKNKQT
Sbjct: 361 GKRTMGIETHNGNRILTNVQYVPDIGYNLLSVGQLMESGHSILFDDGACLIKNKQT 389

BLAST of CsaV3_3G020670 vs. ExPASy TrEMBL
Match: A0A5A7UQM0 (Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00340 PE=4 SV=1)

HSP 1 Score: 544.7 bits (1402), Expect = 3.2e-151
Identity = 290/380 (76.32%), Postives = 312/380 (82.11%), Query Frame = 0

Query: 1   MDNNGNAMGTTQPLILIFKGEGYEFWSMRMKTLLRSQDLWDLVEHNYADPDDEGKLREKR 60
           M NNGN MGTTQPLI IFKGEGYEFWS+RMKTLL SQDLWDLVE  Y DPDDEGKL+E R
Sbjct: 1   MSNNGNVMGTTQPLIPIFKGEGYEFWSIRMKTLLISQDLWDLVEQGYTDPDDEGKLQENR 60

Query: 61  RKDSKALVIIQQAVHDSGFSRIGTTTTSKEAWLILQKAFRGDLRVLVVKLQSLRKEFETL 120
            KD KALVI+QQAVHD+ FSRI   TTSK+AWLILQKAF+GD RVLVVKLQSL+++FETL
Sbjct: 61  EKDPKALVIVQQAVHDNVFSRIAAATTSKQAWLILQKAFQGDSRVLVVKLQSLKRDFETL 120

Query: 121 MMKNRESIANFLSRATTIISQMQTYGETITDQTIVEKVLRSLTLKFDQVVAAIEESKDLS 180
           MMKN ESIA+FLSRATTIISQMQTYGETITDQTIVEKVLRSLT KFD VVAAIEESKDLS
Sbjct: 121 MMKNGESIADFLSRATTIISQMQTYGETITDQTIVEKVLRSLTPKFDHVVAAIEESKDLS 180

Query: 181 TFTFIELMGSLQAHESRINRSMERNEEKAFQVKDVVPKYNNSDRVMTRGRGRGGYRGQGR 240
           TFTFIELMGSLQAHESRIN SME+N+EKAF+VKDVVPKYN+SD VMT+G+G GGYR +GR
Sbjct: 181 TFTFIELMGSLQAHESRINISMEKNKEKAFKVKDVVPKYNDSDCVMTQGQGSGGYRSRGR 240

Query: 241 GTEKGCKQNEEKGQFRVQSSNKANIQCYHGKKFGHVKADC-------------------- 300
           GT KGC QNEE+ QF VQSSNKANIQCYH KKFGHVKADC                    
Sbjct: 241 GTGKGCNQNEEQRQFGVQSSNKANIQCYHCKKFGHVKADCWYKNQRANFTEQNEASENNG 300

Query: 301 ------------CDQKTAEVCFIDSGCSNHMTGLKPIFNELNEGEKLKVELGNNKELQVE 349
                        DQKT EV FIDSG  NHMTGLKP+F ELNEGEKLKVELGN+KELQVE
Sbjct: 301 KGENKLFMINIPSDQKTTEVWFIDSGHLNHMTGLKPVFKELNEGEKLKVELGNSKELQVE 360

BLAST of CsaV3_3G020670 vs. ExPASy TrEMBL
Match: A0A5J5B7G1 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_027881 PE=4 SV=1)

HSP 1 Score: 491.1 bits (1263), Expect = 4.2e-135
Identity = 257/413 (62.23%), Postives = 321/413 (77.72%), Query Frame = 0

Query: 1   MDNNGNAMGTTQPLILIFKGEGYEFWSMRMKTLLRSQDLWDLVEHNYADPDDEGKLREKR 60
           M +N NAM   QPLIL+FKGEGY FWS+RM TL +SQ+LWDLVE  YADPD+E +L+E +
Sbjct: 1   MASNDNAMSAAQPLILVFKGEGYGFWSIRMMTLFKSQELWDLVEQGYADPDEETRLKENK 60

Query: 61  RKDSKALVIIQQAVHDSGFSRIGTTTTSKEAWLILQKAFRGDLRVLVVKLQSLRKEFETL 120
           +KDSKAL+IIQQAVHDS FSRI   TTSK+AW  LQK F+GD +V+VVKLQSLR++FETL
Sbjct: 61  KKDSKALMIIQQAVHDSIFSRIAAATTSKQAWSTLQKEFQGDSKVIVVKLQSLRRDFETL 120

Query: 121 MMKNRESIANFLSRATTIISQMQTYGETITDQTIVEKVLRSLTLKFDQVVAAIEESKDLS 180
            MK+ ESIA+FLSR TTI+SQM++YGE I+D+T+V KVLRSLT KFD VVAAIEESKDLS
Sbjct: 121 YMKSGESIADFLSRVTTIVSQMRSYGEKISDETVVAKVLRSLTPKFDHVVAAIEESKDLS 180

Query: 181 TFTFIELMGSLQAHESRINRSMERNEEKAFQVKDVVPKYNNSDRVMTRGRGRGGYRGQGR 240
            F+F ELMGSLQAHE+RI+RS+E+NEEKAFQVKD+V K   SD  ++RGRGRGG+RG+GR
Sbjct: 181 VFSFDELMGSLQAHETRIDRSLEQNEEKAFQVKDIVTKAAESDSSISRGRGRGGFRGRGR 240

Query: 241 GTEKGCKQN----EEKGQFRVQSSNKANIQCYHGKKFGHVKADCC--------------- 300
           G  +G  +     + + Q   Q +NK  +QCYH KK+G++KADC                
Sbjct: 241 GRGRGNGRGRGRFDGQRQSGEQRNNKNGVQCYHCKKYGYIKADCWYKDQQVNYAAENGEE 300

Query: 301 -----------DQKTAEVCFIDSGCSNHMTGLKPIFNELNEGEKLKVELGNNKELQVERK 360
                      + K+++V F+DSGCSNHMTG+K +F EL+E +KLKV+LGN KE+QVE K
Sbjct: 301 SSKLFMIHFDPNNKSSDVWFVDSGCSNHMTGMKSLFKELDEMQKLKVQLGNAKEMQVEGK 360

Query: 361 GTVGIETHHGN-RILTNVQYVPDIGYNLLSVGQLMESGHSILFDDGACLIKNK 383
           GTVGIET HGN ++L NVQ+VPD+GYNLLSVGQLM +G+SILFD+ AC+IK+K
Sbjct: 361 GTVGIETTHGNVKLLYNVQFVPDLGYNLLSVGQLMAAGYSILFDNDACVIKDK 413

BLAST of CsaV3_3G020670 vs. ExPASy TrEMBL
Match: A0A0V0IV83 (Putative ovule protein (Fragment) OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 461.5 bits (1186), Expect = 3.6e-126
Identity = 239/412 (58.01%), Postives = 307/412 (74.51%), Query Frame = 0

Query: 1   MDNNGNAMGTTQPLILIFKGEGYEFWSMRMKTLLRSQDLWDLVEHNYADPDDEGKLREKR 60
           M  NG+++   QPLI +FKGE YEFWS+RMKT+L+SQDLWDLVE  Y DPD+E +LR+ +
Sbjct: 1   MATNGSSLSVAQPLIPVFKGESYEFWSIRMKTILKSQDLWDLVERGYTDPDEENRLRDNK 60

Query: 61  RKDSKALVIIQQAVHDSGFSRIGTTTTSKEAWLILQKAFRGDLRVLVVKLQSLRKEFETL 120
           +KD+KALV IQQAVHDS FSRI   TTSK+AW ILQK F+GD +V+VV+LQSLR++FETL
Sbjct: 61  KKDAKALVFIQQAVHDSIFSRIAXATTSKQAWSILQKXFQGDSKVIVVRLQSLRRDFETL 120

Query: 121 MMKNRESIANFLSRATTIISQMQTYGETITDQTIVEKVLRSLTLKFDQVVAAIEESKDLS 180
           MMK+ ESIA+FLSRA TI+SQ+++YGE +TDQ IVEKVLRSL  KFD VVAAIEESKDLS
Sbjct: 121 MMKSGESIASFLSRAMTIVSQIRSYGEKVTDQIIVEKVLRSLNPKFDHVVAAIEESKDLS 180

Query: 181 TFTFIELMGSLQAHESRINRSMERNEEKAFQVKDVVPKYNNSDRVMTRGRGRGGYR-GQG 240
            F+F ELMGSLQAHE+R NRS+E+NEEKAFQVKD   KY +++   +RGRGRGG+R G+G
Sbjct: 181 VFSFDELMGSLQAHEARRNRSVEKNEEKAFQVKDATTKYGDNNGPASRGRGRGGFRGGRG 240

Query: 241 RGTEKGCKQNEEKGQFRVQSSNKANIQCYHGKKFGHVKADC------------------- 300
           RG  +G  +N    Q   Q + K  +QC+H  ++GH+KADC                   
Sbjct: 241 RGFGRGRGRNNGHRQSNEQGNTKNGVQCHHCHRYGHIKADCWFKDQKMNFAAEENEKENY 300

Query: 301 -------CDQKTAEVCFIDSGCSNHMTGLKPIFNELNEGEKLKVELGNNKELQVERKGTV 360
                   + K +++ F+DSGCSNHMTG K +F +L+E +K KV+LGN KE+QVE KG V
Sbjct: 301 LFMACIDANHKPSDIWFVDSGCSNHMTGAKSMFRDLDEKQKKKVQLGNTKEMQVEGKGKV 360

Query: 361 GIETHHGN-RILTNVQYVPDIGYNLLSVGQLMESGHSILFDDGACLIKNKQT 385
            ++T H   ++L +VQ+VPD+G+NLLSVGQLM  G+S+LFDD A  I NK++
Sbjct: 361 VVDTSHDKVKMLDDVQFVPDLGFNLLSVGQLMADGYSLLFDDDAYXITNKKS 412

BLAST of CsaV3_3G020670 vs. TAIR 10
Match: AT1G48720.1 (unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 228; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.4 bits (150), Expect = 9.3e-10
Identity = 26/76 (34.21%), Postives = 48/76 (63.16%), Query Frame = 0

Query: 23 YEFWSMRMKTLLRSQDLWDLVEHNYADPDDEGK--------LREKRRKDSKALVIIQQAV 82
          Y+ WS+RMK +L + D+W++VE  + +P++EG         LR+ R++D KAL +I Q +
Sbjct: 18 YDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKALCLIYQGL 77

Query: 83 HDSGFSRIGTTTTSKE 91
           +  F ++   T++K+
Sbjct: 78 DEDTFEKVVEATSAKD 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8650579.11.5e-216100.00hypothetical protein Csa_010963 [Cucumis sativus][more]
TYK27735.13.4e-16380.10putative gag-pol polyprotein, identical [Cucumis melo var. makuwa][more]
TYK28117.15.2e-15673.08putative gag-pol polyprotein, identical [Cucumis melo var. makuwa][more]
XP_031738054.11.7e-151100.00uncharacterized protein LOC116402652 [Cucumis sativus][more]
KAA0055915.16.6e-15176.32copia protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
P041464.2e-0721.53Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Match NameE-valueIdentityDescription
A0A5D3DWP21.6e-16380.10Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3DWC72.5e-15673.08Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7UQM03.2e-15176.32Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00340 ... [more]
A0A5J5B7G14.2e-13562.23Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_027881 PE=4 SV=1[more]
A0A0V0IV833.6e-12658.01Putative ovule protein (Fragment) OS=Solanum chacoense OX=4108 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G48720.19.3e-1034.21unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; B... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 60..199
e-value: 8.5E-24
score: 83.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 222..253
NoneNo IPR availablePANTHERPTHR34222:SF30SUBFAMILY NOT NAMEDcoord: 28..379
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 28..379

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G020670.1CsaV3_3G020670.1mRNA