CsaV3_3G020290 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G020290
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionTranscription elongation factor SPT4 homolog
Locationchr3: 16281431 .. 16287000 (-)
RNA-Seq ExpressionCsaV3_3G020290
SyntenyCsaV3_3G020290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGCGCACCTGCTCAAATTCCTACCAGCTTCGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGGTGAGCTGCAGTCTCCTTTTTTCAAGAATCTTTGGTTGTTCTTATAAATGCTTGCATTCAATATCTAATAGTTTAAGATCTTTGAACTTCTCGAATTGTATGTTATATTGAGTATTGGTCATCCATACAGTTTCGAGAATCGGGCTGTGAGAATTGCCCCTTCTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGCACAACCCCTAATTTTAATGGGTTTGTATAATTTTCTATTCCTTTATTCTCTTTTTGTTTTACTGTTTGTCGTCTTCTTCTGGAATTAACGCTCCTATCCAACGTGGATAATGTTAGCTTAACCTTTTGGTGATTTAATATGATATTAGAGCGTGTGGTTTAGGAGAACTTGCTTTCGAACTCCTGCAATGTTATTTACTCTTCAATTAATATTCGTTTTAACTTGGGAGATGACACAATATTAAATTTACTAAGGTATTGGGTCAATCAATGATTTAATACATAGAAGGTTGGGCATGACATATAATTTCAGTTGTTTCAATGGACATCTACCAAATTTCTATATGAAACCTTAAAAGATTCAATCAATATTAAAAGAAGTAATATTCAGCTTATGATCATGCTGTATTTCACTTACATTTGTTCTGCCCTTTTCCATATCTTGCAGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGTAAAGCTAATTATTACCATATGAGGCCCTTTCTTCTTTCTTACCCCCCTCCCATTAGTTTTTGCAACTAAAGATGTTTTTGTCTTAGAATTGACTAACCTGAGTACTTGTTATTCTAGTAGCAGATAACGTCTTCCTGTCTGACTTTTTAACTTCTGTTGGCCAAGTTTCAACTTTCAAGAACGTCCGTACATAGAACAAAAGAAAGGATGTCACTTTCATTCTTTAATATATAAATTTGTCCATATCCCGAGCCTAATATTAGACCATGAACAGTTGTTCGTTTGAAGCTTGGACCTGTGCACTTTCTGATATCCTTTGAATTATAATTGTAAGAAACTGCTTCGTGGCTGCTGAACGCCTAAAACTGACCAATATCCCAAATTTTTCAGTGAATAATGTATTGCATGGGTTAGTGTTTAGTTCACTTATTTGTATGCTTGATGAAATGGTTGGCAACTTGGAGCAATGACCTTTATTTTTATTATAGGATCATTGTTGATAGAATTGTTGAGTAACCTGGAATTTATGAAACCAGCATTTCTGCTTCTTTTTTTCCTCTTCTTTGAATTTTGTTGTCTTATCTACCTTTCTTTTCACCTAATTTTAATAATTCATTAAATTTCTTGCTTGTAACCTTTTAGCTTTGTGTATAATTTGTTAGCTCTATAGTAGCATTTGGCATTTGATTTTCAGAATTTATATTTCCTTCCAATCTTGTAGGAAGATTCGTTCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCTCTCCCCGAGGATTTGCAGGTTTGCAACCAATCATTTCCTAGCATAAATTTCATCATGACACGATTCATTCTTCTGTGTTCATCTTGTACCAAAGCCATCAGGAATATCAATGCCCATTGGTCAATTGTTTCTGGTCAAGGATTTTTCATTGATTTACTAATCTTATTTAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTGTTTTCTGTTTTTGTTTTTTATTCTTTGTGTTGTTTTAAACTATCAATAAATTCAGCGGCTTCTCTTGCCTAACTTCAAAAACTAAACATCAGGTTTGGGAAATTGGTACATGTGGAATTGGAGGACATCTGGTCCCTTGGGTTGGGAACAACCCTTAGTCTTTCCATTTAAAACAGTACAGTTGGCTTGGCTTGGCTTATTTTTAAAAATTGGAGAGGATTCACTTACCCTTGTATATACTTCTATCTCTCTTGGCGGTAGACAGTTTCTCACAAAGAAAAACATAAACAAAGATTTTTCACTTCAACTGGTCCATGGGAAAGTTGGACTACTGTAGAAGGACCCAACCTCCTAGATTTCAATTTTCATGGTCATATAATTTGAGGCACGAATTGTTGAGCAACATCCCATTGACCCAAACACAGTTTTTCTTCAAATGTACTTGTTTTTCCATGCCTTGGTTCTCATCTCCTTATAAATTCAAGCCTTCTCATATGCCTCGTTTCATAAGTTATTGATCTTTTTCAACTGTTACAATCCCTTCTCGTCGACTAGTTACAAACTCATTGCATTCTCATATGCCTTACCTTCCAACTCTACTAGAAGGTGGCATGTTTTGCCAAAAACTACGTGTAAAGAGAGATCCCATGTGGACTTTTCAATGCAGTCCTACATGCCTACAATGCACCATTTAATTTCTTTGTGCAATCTTTGAGTGAATAGTCCATTGTCTTCTGAAGTATACCTTTACCTCTCTGTTGCAAAATTCTATTTGTCAATTTGGTTGAGAGTGAAAGGCTAGGGTTATCCTATGTCTTACCCTACATTTAGCCAAGAGTGTGCAAAGATTACCTTGCTTTCATTTGTAGGAGTATTGCCTTTACCCATGACCCATGTTGACACGTGATCAATAGCAAAATGTATTTGTTGTTGCTTGAGGATGGAAAGGCCCTATGAATTCATTCCAAACCCATTGAATAATTTCGCTTCAGAATGTCCTGCAAGAACATTTCATCTTCTCTAGAGATATTTCTTGTTGTTGACATTTTTCATGTCCTGTTAAAAGAATAAATTTCAAATACCGAGAATTTATTCTTAGATAACTCCGCATTTTTTTACCATCTCGTAAAAGATCATCATTGTGCACCTTTGTGAATGTGATGGATGCGTAGTGTATGGCATTCTTCTAAATGCAAAAGTACCATATTGGATGTGGACGGTCTCCTCTGGAGCTAATTCTAATTGATGATATTGATAGGACTGCGATTAGATTATTATAAAGGCATATTGGTAATTAGTTTGGGAAGTTTGTTATGGAGTTTTGTTGTAATTAATGGCTAGGGAATGAGAAAGTTAGGCAATATTGTGGTGAGTGAAATAGGGCTTGAGAGTAATTTCAAGAGGGAATGGTTGGCATACCTTGATTACAAATGTGACTTACATGGAGATTTATCTTATAAAGACTTCTCTAATTTGATTGATTTAAAGAGGATAAAATGGTTAATGGAAGATGAAGCTTTTATTGTGTCAAATGATGGTAAGTTGAATGAAGTAAAGGATTGTCCAAAAGTTCCCTTAGAGCATCAGTTACTCCATACTTTGAATGACTCAGATGACTATGGTCATGATATAGGTACTCCTTGTCTTCCCATGGATGATTTTTCTCCACAAGAGGAGCCTCCAGATGACATTAAGCATTCATCATCTCTTCAACCTGCCCTGAATTCAAACAGGGTGAAGCCAAGGTTCATGAAAGCTTTCCCTCTGCATTATTCTCAAAAGAAAGAAATTCTCAGTGTTCTTGACTGCAAAGAAAGAAATTCCCACGCTTTAGAAAAATCTTGTATTTATCTTTTGGTTTCTTCATTTGTTGGCTTCACAACAACACCAGTCTTTGGATCCTGACAAGTTCTTTAAGCAATCTTTTATCTCTCCCCGGATAAGATGTTTATTAAAGGGGTATCCAATCCCCTTTCTCCTAAAGAAATTTTATCTTCTTCTGATGATGGTGAGGAATCAATTGTAAGCATGAGGAGTGAGGAAGTGAATTTCCTATGGAGAAATACTGCAACAGGATTTACTATTGAAGGATATACTTGCAGAAAGCTGTTATCATATTTTTTGCAAATGAAGACATTGGATCGCTTAGTTCAAAGTCTTTTTGCTGGAGCATCACCAATGTTTTCTCTGTATGTTCCTTGCAAGTTAATGTTTTTAGTAAGGTTTGTGGTCTTCAACTGCAAATATTCCTTCTAGATCTCCAGGAGTTATAGTTTAACAGTGTTTACCTTGAGTTTCTTATGGCCCTTTTTGCCTTGAGGTCTCATTTCCATTTCTGAAGGACTTCTTTTAGAATTTTTGGTCTTTTGCTGTGCAATCTTGTCAGTTTTTTGGTTTGACGTTTCTCTTTGTTTGGGCTGGTATGTTTTGGTTCAATTTGTCTCTTAAGAGTCATATGGGGCTCTCTAAGTCTTTTTTGTGCTTCTTAGTTGAAGGTTTTTCTGTCTTATTTGATTTGTATTCTTCATCAGTTTGTTTGCTTCTTATTTTTGTCCTTTGGTTGGGTGTCGTGTATTTTGGAGCATTAGTGTCTTTCCATTTTATTAATAAAGTTTTGTTTCCTTTTCAAAATTAAATAAGAAAGAAAGAAAAGAAAAGTGATATCTTGAGTAACCATCCAGAAGACATTAGTGTTTATGTTGTGCCAATCAGTCTAACATTTGGTCAATAGAGGGCAAGGGTTTCCTTCTCTAACTAATAATTTATGCAGCTTCCCCAATCAATGATTGTTCTTGCCAAGATCAACTCATTATCTCGTTCTCTACCACCGTTGCCCGTCCTTTCTTTATTACCACATGTACTAGACTCATCCATTTCAAAACTTCACCCCTATTCCCTGAACCTCTTTCGCTTTCTGGTTGATGAGTCTCCTTTGCACTTCAATTGATGGTGTAATCCCTTCTTCTCATAAATTTTTGTGATACACAATGAAGAGCTCGTACCGTTTGTACTTTCAAAAGACCATCAGACTGCCTGTTTATGTTTCCTATTTGCATGCAACAACCGTTTTTTCTCTGATTAGACAACTCTAATGAGGTGATTGTGTTAGGGCCCCAATTCTATTGAAATATTCCAGAAGGGGAAAAAAGGGTAACATGAGTGAGAGTTGGTTATGGTGGGGACCACTAGGGCTGTATGGGAGTGAGGAGTGGTCAGTCTATATATAGAATAGGATGTTATTTTCTAGTGTAAGCTTTTGGTAAGTAAACCAGTAGTCTTGAGCAAAGGGAGGTTAAGTTTCTCTGCACTCCAAGGAATTGTAGCCTCCGGGCAACTCTTTGATGTTAATACAAATATTAGTAAGGGATACCTTACAGATTGCTGAAAGAGTGGACTCTTCACTCAAGATATATATCTCAAATGAGATGGTTGCATGTTTTTGGGTTTCATCGGTTTTATTAATATCCAAAACTATTGATGATGTAACTGGGTATAACGAAGTGGTAGTGCAGAGTAGCTTTACAAGTCCTATGTCCTGGAGGGCTGGGAGGAATTTTTTCAAGTTAATTAATAGTCTTCGAAATCTAACTATTAGTGCCTGAAGATGAAATTTGTGGTGTCGTATCGAGCACCTGAAATGTTTCATTTTGCCTTCATTTTACCTTCATTTTACCATTGCTGTCTGAGTACTACAACATGACTTTGTAAAGTTGTAATTCTTATATATTCTAATGCTATTGTTTTTTGCAGAATTTATGTGAAGAGGAGCGCGTGCAGTATGCACCACCAAAACGTGTTTAA

mRNA sequence

ATGGCAAGCGCACCTGCTCAAATTCCTACCAGCTTCGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGTTTCGAGAATCGGGCTGTGAGAATTGCCCCTTCTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGCACAACCCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGAAGATTCGTTCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCTCTCCCCGAGGATTTGCAGAATTTATGTGAAGAGGAGCGCGTGCAGTATGCACCACCAAAACGTGTTTAA

Coding sequence (CDS)

ATGGCAAGCGCACCTGCTCAAATTCCTACCAGCTTCGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGTTTCGAGAATCGGGCTGTGAGAATTGCCCCTTCTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGCACAACCCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGAAGATTCGTTCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCTCTCCCCGAGGATTTGCAGAATTTATGTGAAGAGGAGCGCGTGCAGTATGCACCACCAAAACGTGTTTAA

Protein sequence

MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV*
Homology
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BLAST of CsaV3_3G020290 vs. NCBI nr
Match: XP_008461561.1 (PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo] >XP_008461562.1 PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo] >XP_008461563.1 PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo] >XP_011651356.1 transcription elongation factor SPT4 homolog 2 [Cucumis sativus] >XP_011651357.1 transcription elongation factor SPT4 homolog 2 [Cucumis sativus] >XP_011651358.1 transcription elongation factor SPT4 homolog 2 [Cucumis sativus] >XP_031739203.1 transcription elongation factor SPT4 homolog 2 [Cucumis sativus] >KGN57714.1 hypothetical protein Csa_010059 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 1.2e-63
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV
Sbjct: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 116

[Close]
BLAST of CsaV3_3G020290 vs. NCBI nr
Match: XP_038881174.1 (transcription elongation factor SPT4 homolog 2 [Benincasa hispida] >XP_038881183.1 transcription elongation factor SPT4 homolog 2 [Benincasa hispida] >XP_038881192.1 transcription elongation factor SPT4 homolog 2 [Benincasa hispida])

HSP 1 Score: 251.5 bits (641), Expect = 3.5e-63
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV
Sbjct: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 116

[Close]
BLAST of CsaV3_3G020290 vs. NCBI nr
Match: XP_022143259.1 (transcription elongation factor SPT4 homolog 2 [Momordica charantia] >XP_022143260.1 transcription elongation factor SPT4 homolog 2 [Momordica charantia] >XP_022143261.1 transcription elongation factor SPT4 homolog 2 [Momordica charantia])

HSP 1 Score: 251.5 bits (641), Expect = 3.5e-63
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV
Sbjct: 61  GIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 116

[Close]
BLAST of CsaV3_3G020290 vs. NCBI nr
Match: XP_022948256.1 (transcription elongation factor SPT4 homolog 2 [Cucurbita moschata] >XP_022948257.1 transcription elongation factor SPT4 homolog 2 [Cucurbita moschata] >XP_022948258.1 transcription elongation factor SPT4 homolog 2 [Cucurbita moschata] >XP_022998096.1 transcription elongation factor SPT4 homolog 2 [Cucurbita maxima] >XP_022998097.1 transcription elongation factor SPT4 homolog 2 [Cucurbita maxima] >XP_022998098.1 transcription elongation factor SPT4 homolog 2 [Cucurbita maxima] >XP_023523239.1 transcription elongation factor SPT4 homolog 2 [Cucurbita pepo subsp. pepo] >XP_023523240.1 transcription elongation factor SPT4 homolog 2 [Cucurbita pepo subsp. pepo] >KAG6607059.1 Transcription elongation factor SPT4-like 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036760.1 Transcription elongation factor SPT4-like 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 250.8 bits (639), Expect = 6.0e-63
Identity = 114/116 (98.28%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQN+CEEERVQYAPPKRV
Sbjct: 61  GIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQNICEEERVQYAPPKRV 116

[Close]
BLAST of CsaV3_3G020290 vs. NCBI nr
Match: XP_012065876.1 (transcription elongation factor SPT4 homolog 2 [Jatropha curcas] >XP_012074304.1 transcription elongation factor SPT4 homolog 2 isoform X2 [Jatropha curcas] >XP_021621125.1 transcription elongation factor SPT4 homolog 2 [Manihot esculenta] >OAY59109.1 hypothetical protein MANES_01G004880v8 [Manihot esculenta])

HSP 1 Score: 246.1 bits (627), Expect = 1.5e-61
Identity = 111/116 (95.69%), Postives = 114/116 (98.28%), Query Frame = 0 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M SAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP+RSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCE+ERVQY PPKRV
Sbjct: 61  GIISVMDPSRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYIPPKRV 116

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BLAST of CsaV3_3G020290 vs. ExPASy Swiss-Prot
Match: Q94C60 (Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At5g63670 PE=1 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 2.7e-58
Identity = 99/116 (85.34%), Postives = 110/116 (94.83%), Query Frame = 0 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M SAPAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRDAGCENCPFFKMEEDHERIVEVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q+LC+EERVQY  PKR+
Sbjct: 61  GIISVMDPSRSWAARWLRIGKFAPGCYTLAVSEPLPEEMQHLCQEERVQYVLPKRM 116

[Close]
BLAST of CsaV3_3G020290 vs. ExPASy Swiss-Prot
Match: Q8LCQ3 (Transcription elongation factor SPT4 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At5g08565 PE=3 SV=3)

HSP 1 Score: 220.3 bits (560), Expect = 1.1e-56
Identity = 94/116 (81.03%), Postives = 108/116 (93.10%), Query Frame = 0 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M  APAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFN
Sbjct: 1   MGEAPAQIPTSFGHELRACLRCRLVKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q +C++ RVQY PPKR+
Sbjct: 61  GIISMMDPRRSWAARWLRIGKFAPGCYTLAVSEALPEEMQFICQQARVQYVPPKRI 116

[Close]
BLAST of CsaV3_3G020290 vs. ExPASy Swiss-Prot
Match: Q6DGQ0 (Transcription elongation factor SPT4 OS=Danio rerio OX=7955 GN=supt4h1 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 8.5e-20
Identity = 44/90 (48.89%), Postives = 58/90 (64.44%), Query Frame = 0 

Query: 8  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVM 67
          +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V ECT+ +F+G+I++M
Sbjct: 6  VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCESYLQMKGNREMVYECTSSSFDGVIAMM 65

Query: 68 DPARSWAARWLRIGRFVPGCYTLAVSEALP 97
           P  SW A+W RIG F PG Y + V+  LP
Sbjct: 66 SPEDSWVAKWQRIGNFKPGVYAVTVTGRLP 94

[Close]
BLAST of CsaV3_3G020290 vs. ExPASy Swiss-Prot
Match: Q5RFH5 (Transcription elongation factor SPT4 OS=Pongo abelii OX=9601 GN=SUPT4H1 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-19
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = 0 

Query: 8   IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVM 67
           +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M
Sbjct: 6   VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMM 65

Query: 68  DPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQY 111
            P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct: 66  SPGDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108

[Close]
BLAST of CsaV3_3G020290 vs. ExPASy Swiss-Prot
Match: P63271 (Transcription elongation factor SPT4-A OS=Mus musculus OX=10090 GN=Supt4h1a PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.9e-19
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = 0 

Query: 8   IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVM 67
           +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M
Sbjct: 6   VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMM 65

Query: 68  DPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQY 111
            P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct: 66  SPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108

[Close]
BLAST of CsaV3_3G020290 vs. ExPASy TrEMBL
Match: A0A1S3CFH1 (Transcription elongation factor SPT4 homolog OS=Cucumis melo OX=3656 GN=LOC103500131 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 5.8e-64
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV
Sbjct: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 116

[Close]
BLAST of CsaV3_3G020290 vs. ExPASy TrEMBL
Match: A0A0A0L9Q3 (Transcription elongation factor SPT4 homolog OS=Cucumis sativus OX=3659 GN=Csa_3G258160 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 5.8e-64
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV
Sbjct: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 116

[Close]
BLAST of CsaV3_3G020290 vs. ExPASy TrEMBL
Match: A0A6J1CNB4 (Transcription elongation factor SPT4 homolog OS=Momordica charantia OX=3673 GN=LOC111013173 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.7e-63
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV
Sbjct: 61  GIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 116

[Close]
BLAST of CsaV3_3G020290 vs. ExPASy TrEMBL
Match: A0A6J1K6X8 (Transcription elongation factor SPT4 homolog OS=Cucurbita maxima OX=3661 GN=LOC111492846 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 2.9e-63
Identity = 114/116 (98.28%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQN+CEEERVQYAPPKRV
Sbjct: 61  GIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQNICEEERVQYAPPKRV 116

[Close]
BLAST of CsaV3_3G020290 vs. ExPASy TrEMBL
Match: A0A6J1G8V8 (Transcription elongation factor SPT4 homolog OS=Cucurbita moschata OX=3662 GN=LOC111451985 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 2.9e-63
Identity = 114/116 (98.28%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQN+CEEERVQYAPPKRV
Sbjct: 61  GIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQNICEEERVQYAPPKRV 116

[Close]
BLAST of CsaV3_3G020290 vs. TAIR 10
Match: AT5G63670.1 (SPT4 homolog 2 )

HSP 1 Score: 225.7 bits (574), Expect = 1.9e-59
Identity = 99/116 (85.34%), Postives = 110/116 (94.83%), Query Frame = 0 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M SAPAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRDAGCENCPFFKMEEDHERIVEVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q+LC+EERVQY  PKR+
Sbjct: 61  GIISVMDPSRSWAARWLRIGKFAPGCYTLAVSEPLPEEMQHLCQEERVQYVLPKRM 116

[Close]
BLAST of CsaV3_3G020290 vs. TAIR 10
Match: AT5G08565.1 (Transcription initiation Spt4-like protein )

HSP 1 Score: 220.3 bits (560), Expect = 8.1e-58
Identity = 94/116 (81.03%), Postives = 108/116 (93.10%), Query Frame = 0 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M  APAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFN
Sbjct: 1   MGEAPAQIPTSFGHELRACLRCRLVKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q +C++ RVQY PPKR+
Sbjct: 61  GIISMMDPRRSWAARWLRIGKFAPGCYTLAVSEALPEEMQFICQQARVQYVPPKRI 116

[Close]
BLAST of CsaV3_3G020290 vs. TAIR 10
Match: AT5G08565.2 (Transcription initiation Spt4-like protein )

HSP 1 Score: 182.2 bits (461), Expect = 2.4e-46
Identity = 80/116 (68.97%), Postives = 94/116 (81.03%), Query Frame = 0 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M  APAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFN
Sbjct: 1   MGEAPAQIPTSFGHELRACLRCRLVKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           G +S            L  G+F PGCYTLAVSEALPE++Q +C++ RVQY PPKR+
Sbjct: 61  GFVSDRREINLTHCNILFPGKFAPGCYTLAVSEALPEEMQFICQQARVQYVPPKRI 116

[Close]
BLAST of CsaV3_3G020290 vs. TAIR 10
Match: AT5G63670.2 (SPT4 homolog 2 )

HSP 1 Score: 164.1 bits (414), Expect = 6.9e-41
Identity = 72/79 (91.14%), Postives = 77/79 (97.47%), Query Frame = 0 

Query: 1  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
          M SAPAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFN
Sbjct: 1  MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRDAGCENCPFFKMEEDHERIVEVTTPNFN 60

Query: 61 GIISVMDPARSWAARWLRI 80
          GIISVMDP+RSWAARWLRI
Sbjct: 61 GIISVMDPSRSWAARWLRI 79

The following BLAST results are available for this feature:
BLAST of CsaV3_3G020290 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008461561.11.2e-63100.00PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo] >XP_008... [more]
XP_038881174.13.5e-6399.14transcription elongation factor SPT4 homolog 2 [Benincasa hispida] >XP_038881183... [more]
XP_022143259.13.5e-6399.14transcription elongation factor SPT4 homolog 2 [Momordica charantia] >XP_0221432... [more]
XP_022948256.16.0e-6398.28transcription elongation factor SPT4 homolog 2 [Cucurbita moschata] >XP_02294825... [more]
XP_012065876.11.5e-6195.69transcription elongation factor SPT4 homolog 2 [Jatropha curcas] >XP_012074304.1... [more]
BLAST of CsaV3_3G020290 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q94C602.7e-5885.34Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis thaliana OX=3702 G... [more]
Q8LCQ31.1e-5681.03Transcription elongation factor SPT4 homolog 1 OS=Arabidopsis thaliana OX=3702 G... [more]
Q6DGQ08.5e-2048.89Transcription elongation factor SPT4 OS=Danio rerio OX=7955 GN=supt4h1 PE=3 SV=1[more]
Q5RFH51.4e-1941.35Transcription elongation factor SPT4 OS=Pongo abelii OX=9601 GN=SUPT4H1 PE=3 SV=... [more]
P632711.9e-1941.35Transcription elongation factor SPT4-A OS=Mus musculus OX=10090 GN=Supt4h1a PE=2... [more]
BLAST of CsaV3_3G020290 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CFH15.8e-64100.00Transcription elongation factor SPT4 homolog OS=Cucumis melo OX=3656 GN=LOC10350... [more]
A0A0A0L9Q35.8e-64100.00Transcription elongation factor SPT4 homolog OS=Cucumis sativus OX=3659 GN=Csa_3... [more]
A0A6J1CNB41.7e-6399.14Transcription elongation factor SPT4 homolog OS=Momordica charantia OX=3673 GN=L... [more]
A0A6J1K6X82.9e-6398.28Transcription elongation factor SPT4 homolog OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
A0A6J1G8V82.9e-6398.28Transcription elongation factor SPT4 homolog OS=Cucurbita moschata OX=3662 GN=LO... [more]
BLAST of CsaV3_3G020290 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G63670.11.9e-5985.34SPT4 homolog 2 [more]
AT5G08565.18.1e-5881.03Transcription initiation Spt4-like protein [more]
AT5G08565.22.4e-4668.97Transcription initiation Spt4-like protein [more]
AT5G63670.26.9e-4191.14SPT4 homolog 2 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022800Spt4/RpoE2 zinc fingerSMARTSM01389Spt4_2coord: 16..92
e-value: 2.9E-42
score: 156.4
IPR022800Spt4/RpoE2 zinc fingerPFAMPF06093Spt4coord: 16..92
e-value: 9.8E-33
score: 112.1
IPR022800Spt4/RpoE2 zinc fingerCDDcd07973Spt4coord: 14..110
e-value: 2.14701E-49
score: 150.467
IPR038510Spt4 superfamilyGENE3D3.30.40.210coord: 1..106
e-value: 1.4E-40
score: 139.5
IPR009287Transcription initiation Spt4PIRSFPIRSF025023Spt4coord: 2..116
e-value: 2.3E-48
score: 160.8
IPR009287Transcription initiation Spt4PANTHERPTHR12882SUPPRESSOR OF TY 4coord: 1..116
NoneNo IPR availablePANTHERPTHR12882:SF4TRANSCRIPTION ELONGATION FACTOR SPT4 HOMOLOG 2coord: 1..116
IPR029040RNA polymerase subunit RPABC4/transcription elongation factor Spt4SUPERFAMILY63393RNA polymerase subunitscoord: 11..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G020290.1CsaV3_3G020290.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032786 positive regulation of DNA-templated transcription, elongation
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0008270 zinc ion binding