CsaV3_3G020220 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G020220
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic
Location	chr3: 16209817 .. 16213991 (+)
RNA-Seq Expression	CsaV3_3G020220
Synteny	CsaV3_3G020220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTGCTTTAGTTACTTAAAATTTAATTGAAGCGGTTTGGATTTTATGTGGGATTTCTACATTCTATCCAAAGAAACCAAGAAGCCCCTCCTTCCTCGTTAGGGAGCTTTGTGTGTGAGTGTGTTCAATTTCTCTTCAGTTTCTTCTACGGCTTTAACAACATCCTCCACTTCTTCTGCTCGAAAATCCACTCTTCTTTTTACCAAACCATCCAATTTGCACGCAGGTTCAGTATTTTATTTTCTTCTTCGTCTTCTTCGCTTTCCTACCCTTTGCTTTCGCTTTTCCCATTTAAAGTTCAACGAAACAACATGGTTCTTCAAGGGTTTTCTTTTTCCTGCTTTAGGTTTCAATGTTATTTGCAGCATCCTTCCAAAGTGTCTCCTTATTTTCTAATTCGAGTAGTGCCCATTTCCATTTTCCTTCCACAAAGCCTCTGGTCTCCACCAGGCTCTCCGTACGAGCTTCATCGCCGGATAGTGATAGTAATGGTCTTAAAGTGGAGTATACTCCTTGGCTTATTGTTGGACTGGGTAACCCAGGAAACAAGTATCATGGGACTCGGCACAATGTAATCAGACATTCTTTAACTCTGTGTAATGAACTTTTTTGAATGAGTTTGGGATGGACTTTTCATAGTTTAGCAGTACTTTTAATTTAAACCAATCAAATTTCCTATCTAGTGCTTTCTATGAAGTGTTCCAAACTCACCATCTCTTAACGTGCAGTGACACTAAGTAACATTGCTCTTTTTGGCCTCTTGGGTTTGATTGGTCAGGTTGGTTTTGAAATGATTGATAGCATTGCTCAAGCGCAGGGAATTTTGATGAACACAATACAATCCAAAGCTCTAATTGGAATAGGTTGGCTTGTTTTCCCCTTCTATGTTATTGAATTGGGTTTCCATGTTACGTGGATTTGAAGTTCATTATGTTTCTTGAATAATCAGTACAGGTTCAATCGGAGAAGTACCAATTTTATTGGCAAAGCCTCAAACTTACATGAATTTCTGTGGAGAATCGGTTTGTCCTCTTGTCTCTCTTTTCTTCTGTTATTCAATAAGCATGGCACACAGCATACAGTTGAATGATGGTTTGTTTATATCTGAAGTGTATGGATCCAAAGCTTAGTTTGAAGCAAAATAAGCTCACCGAGCTCCTTGTATGACCTTATATTCATAGGGATAGATTGTTAGTTTCTTTCCATTGAAGCAATGACATAGCATTAATATCGCATTTTGATAAGTATGTGGACAGGAGTTCTGTGGGTTTGGATATGTTTTACGCCTTTAGATGTTCTACTTAACCTTCAATTTTGTCTGAGTGTGATTGTTAGAGGCCCAAAGTCAACTGTGATTTGCTCGAAGTGAACTAAATCTCTGATTGGATAGGTTTATTGTGATGATGGTCTGAAGATACTTAGTTTTTTCATTTTTCTAACCTTGCTGGTTACATATACTAGAAAACTCAGTTGATTCCTGTATTAGATTTTGGATGAGGCTATAATATTGTCATTCCTACAATATCTGGCTGTATTTATTTGCACCACTTTATACCTATGCACTCTATAGCGTTTTGTGGTAGAGCTTTGTTGTTTAGTAGCTGAGGATAAAAACAAATTCTTTGAGGAAACCATTGTGATTGAACTATAACGTGGTTATTGTTGCCATCTACAAATAATTTACATGATCTTATTAAATACATGGGGTTTTCTTCTCAAAATCAACTGGTAATGAGAGAAGTAACTCATCTATTTTATAAATAAATAAATGTTGCGAGTGTCCCTTGACTTGTTCAATGCTGAATCCTCAAGATGTCCCCTCAAGATGAATCTTTGGATTCACCATTCTAGAATCAAATTCAATGTTTTGTTTCCGGATTGAATATTGAATGCTCGTTTGGCTTAATAAGCTACAATAGCCAATTAGATACATGGAATTTTATCTCAAAATCATTTGGCAATGTTATGAGTAGTTGATCTCAATATCTTAAGAACCCTGCACATGGATGTTTTGTTCTACAGCTGCTAATACTATGAATCTTTCCTTCATCATTTGAATTATTTTTCCATAATGACGAGATAGTTATTCCCTTCACATGACTTTCTGCTTAAATTTTATAGGTTGGACCTCTTGCTGCACATTACCAAATACCTTTACGGCATGTCTTGTTGGTATAGTTTGCAATTTCTCCTAGTAATTCTTATGTTACTGTACAAAATGACTAGATTGAATGGAATTCTGTACATGCTTACCATTGTAGACTTATGATGAAATGAACTTGCCAAATGGCGTTCTTAGGCTGCAGCCAAAAGCAGGACATGGCCATCATAATGGGTAGGTTTATGAAATATTATTTAATATCGGTTTCACCTTTATTTTTGTTCTAGTTTTAATTGATACCTCATACTTTCAATTTTTCTAACCTTGTTATGTTGTTGTTATGTACCTATGGTAATGTTTGGAAGTACTTTTGATATCACCACAAGTGGTTCTCACTTAAAATCATCATGCTTGAGAGTAACATAAAAGTACATTAGGAAAATGTCAAAAGTATATAAAGGGCTTCACGAGAAAGTTTCTACAGAGTGCTTTTGGCCCAATTGCTGGACCAGCAAGCACACTTGACAACAAATTAAAAAATGTAGAACTAAAAATAAAATTAGTTTGTAATTTAGCACCTTCTACTGAAGGCCTTATATTAAAATATCTTTTTAAAAGCACTCTCAAACATATATTTTATTGGGGCATGTGTTGGAACTTCTTTGACAAGCTTATTACATCATTAAGAAAATTGAAGCTCAATGGACTATTTCTTGTCGAATACCCACCAACTTCTCACTGAAGACTGTTAGGCCCCCTATTATTCACACATACAAATGAAGGGGCACAAAAGGTAATAACCAGGTGACAGCTTAACCTATGAGGATTGAGGAATATGTTGCTGTGGGACCCATGGGAAGGGATGGGAGTATATAAAGGAATGTTTTTGGGATTGCTGAAGGTAGGTCATATTTTGAGAAAAATTGCGGAAAGTTTGGAGGAGAAGGCCAGCATTCTTGAATTAGCTGGAGAGTCTTTCCTTTTATATTTTGACATTTCTTGTGTTATTTTCTGCTGTTTAGAGGATATCTACATGAACCTTGTTTCCGACTCTATTTCTATCAATATATAAATATAGAGTACTGTCTCTGTTCCTCTATTGTGTTGTTCTATTGTGTGTTGGGACGTTTCTGAGTGGCAGGTTTTTGGGATCCTAACAAAGACAAGGTGTTTCATATTAGCATTTTATAGTTGATTTGATTGGACATGCATTTTCCTTCGCTTATTTGCCATTCAACATGGAAGTCATGTTCTTCTCTTATTTGTTATGAAGAAATTTATGGCACCATGTGCATAAAAAGTTGTTATTGATTACATTAGTTATACAGGGTGAAGAGTGTAATGGGACACCTGGATGGTCGACGTGAGTTTCCTCGGCTATGCATCGGTACGCATCTTGGTTAACATTAGTTTGAAAATGTTCATTAAGTTTCTACTTCAGGAAGTGTAAACAACGACATTGCTCTTGTTATTACTATATCTAGGAATTGGAAACCCACCTGGGACTATGGACATGAAAGCTTTTCTCCTGCAGAAGTTCAGTTCAGTTGAGCGAAAACAGGTGAGACTTCCTTTGCATTCTAATACAGTTCCACTCTGCATTAGTTTATATGTCGCAGCCTGATGACCTCGAAGCTGTACTTGCCTGGTGGTAGAACACTATTGCTTAGTGCGTTTTTCTTTTTTGACTTTTGTTTGTGCAACCCAACAGATCGATGCAGCTCTTGAACAAGGGGTTGAGGCAGTGAGAACCCTTGCACTGAATGGATTTAGCCAAAGAGTAAACAGATTCAATTTGTCCCAGAAATACAAGTATCATAAGGTTTGAACCTCAGGAAAAGAAAGTTGTAGTTTTGATCATATTGGTAAGTGATAATGAACTCTGATAAAAATGAAGTGTAGGACTGGATATATAATTAAATTAATTGTATTTGATCATGTGAGTTAGCTACAATGGTTGACTACTTGCTGTTCTAAGCAGATCAATTCACAGGAAGATAATCTAATACCCAATTGTTCATGAATTTACATCGTACAACATAAATGATATAAACAAATTGATTTTTAGAAGTTA

mRNA sequence

ATGTTATTTGCAGCATCCTTCCAAAGTGTCTCCTTATTTTCTAATTCGAGTAGTGCCCATTTCCATTTTCCTTCCACAAAGCCTCTGGTCTCCACCAGGCTCTCCGTACGAGCTTCATCGCCGGATAGTGATAGTAATGGTCTTAAAGTGGAGTATACTCCTTGGCTTATTGTTGGACTGGGTAACCCAGGAAACAAGTATCATGGGACTCGGCACAATGTTGGTTTTGAAATGATTGATAGCATTGCTCAAGCGCAGGGAATTTTGATGAACACAATACAATCCAAAGCTCTAATTGGAATAGGTTCAATCGGAGAAGTACCAATTTTATTGGCAAAGCCTCAAACTTACATGAATTTCTGTGGAGAATCGGTTGGACCTCTTGCTGCACATTACCAAATACCTTTACGGCATGTCTTGTTGACTTATGATGAAATGAACTTGCCAAATGGCGTTCTTAGGCTGCAGCCAAAAGCAGGACATGGCCATCATAATGGGGTGAAGAGTGTAATGGGACACCTGGATGGTCGACGTGAGTTTCCTCGGCTATGCATCGGAATTGGAAACCCACCTGGGACTATGGACATGAAAGCTTTTCTCCTGCAGAAGTTCAGTTCAGTTGAGCGAAAACAGATCGATGCAGCTCTTGAACAAGGGGTTGAGGCAGTGAGAACCCTTGCACTGAATGGATTTAGCCAAAGAGTAAACAGATTCAATTTGTCCCAGAAATACAAGTATCATAAGGTTTGA

Coding sequence (CDS)

ATGTTATTTGCAGCATCCTTCCAAAGTGTCTCCTTATTTTCTAATTCGAGTAGTGCCCATTTCCATTTTCCTTCCACAAAGCCTCTGGTCTCCACCAGGCTCTCCGTACGAGCTTCATCGCCGGATAGTGATAGTAATGGTCTTAAAGTGGAGTATACTCCTTGGCTTATTGTTGGACTGGGTAACCCAGGAAACAAGTATCATGGGACTCGGCACAATGTTGGTTTTGAAATGATTGATAGCATTGCTCAAGCGCAGGGAATTTTGATGAACACAATACAATCCAAAGCTCTAATTGGAATAGGTTCAATCGGAGAAGTACCAATTTTATTGGCAAAGCCTCAAACTTACATGAATTTCTGTGGAGAATCGGTTGGACCTCTTGCTGCACATTACCAAATACCTTTACGGCATGTCTTGTTGACTTATGATGAAATGAACTTGCCAAATGGCGTTCTTAGGCTGCAGCCAAAAGCAGGACATGGCCATCATAATGGGGTGAAGAGTGTAATGGGACACCTGGATGGTCGACGTGAGTTTCCTCGGCTATGCATCGGAATTGGAAACCCACCTGGGACTATGGACATGAAAGCTTTTCTCCTGCAGAAGTTCAGTTCAGTTGAGCGAAAACAGATCGATGCAGCTCTTGAACAAGGGGTTGAGGCAGTGAGAACCCTTGCACTGAATGGATTTAGCCAAAGAGTAAACAGATTCAATTTGTCCCAGAAATACAAGTATCATAAGGTTTGA

Protein sequence

MLFAASFQSVSLFSNSSSAHFHFPSTKPLVSTRLSVRASSPDSDSNGLKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNFCGESVGPLAAHYQIPLRHVLLTYDEMNLPNGVLRLQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV*

Homology

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BLAST of CsaV3_3G020220 vs. NCBI nr
Match: XP_004145630.1 (chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic [Cucumis sativus] >KGN57706.1 hypothetical protein Csa_010483 [Cucumis sativus])

HSP 1 Score: 505.0 bits (1299), Expect = 3.8e-139
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0


Query: 1   MLFAASFQSVSLFSNSSSAHFHFPSTKPLVSTRLSVRASSPDSDSNGLKVEYTPWLIVGL 60
           MLFAASFQSVSLFSNSSSAHFHFPSTKPLVSTRLSVRASSPDSDSNGLKVEYTPWLIVGL
Sbjct: 1   MLFAASFQSVSLFSNSSSAHFHFPSTKPLVSTRLSVRASSPDSDSNGLKVEYTPWLIVGL 60

Query: 61  GNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF 120
           GNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF
Sbjct: 61  GNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF 120

Query: 121 CGESVGPLAAHYQIPLRHVLLTYDEMNLPNGVLRLQPKAGHGHHNGVKSVMGHLDGRREF 180
           CGESVGPLAAHYQIPLRHVLLTYDEMNLPNGVLRLQPKAGHGHHNGVKSVMGHLDGRREF
Sbjct: 121 CGESVGPLAAHYQIPLRHVLLTYDEMNLPNGVLRLQPKAGHGHHNGVKSVMGHLDGRREF 180

Query: 181 PRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNL 240
           PRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNL
Sbjct: 181 PRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNL 240

Query: 241 SQKYKYHKV 250
           SQKYKYHKV
Sbjct: 241 SQKYKYHKV 249

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BLAST of CsaV3_3G020220 vs. NCBI nr
Match: XP_008461557.1 (PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic [Cucumis melo])

HSP 1 Score: 485.3 bits (1248), Expect = 3.1e-133
Identity = 239/250 (95.60%), Postives = 246/250 (98.40%), Query Frame = 0


Query: 1   MLFAASFQSVSLFSNSSSAHFHFPSTKPLVSTRLSVRASSPDSD-SNGLKVEYTPWLIVG 60
           ML+AASFQSVSLFSNSS+AH+H PSTKPLVSTRLSVRAS PDSD +NG+KVEYTPWLIVG
Sbjct: 1   MLYAASFQSVSLFSNSSTAHYHSPSTKPLVSTRLSVRASLPDSDNNNGVKVEYTPWLIVG 60

Query: 61  LGNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMN 120
           LGNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMN
Sbjct: 61  LGNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMN 120

Query: 121 FCGESVGPLAAHYQIPLRHVLLTYDEMNLPNGVLRLQPKAGHGHHNGVKSVMGHLDGRRE 180
           FCGESVGPLAAHYQIPLRH+LLTYDEM+LPNGVLRLQPK GHGHHNGVKSVMGHLDGRRE
Sbjct: 121 FCGESVGPLAAHYQIPLRHILLTYDEMSLPNGVLRLQPKGGHGHHNGVKSVMGHLDGRRE 180

Query: 181 FPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFN 240
           FPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFN
Sbjct: 181 FPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFN 240

Query: 241 LSQKYKYHKV 250
           LSQKYKYHKV
Sbjct: 241 LSQKYKYHKV 250

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BLAST of CsaV3_3G020220 vs. NCBI nr
Match: XP_038899626.1 (chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic [Benincasa hispida])

HSP 1 Score: 474.6 bits (1220), Expect = 5.4e-130
Identity = 234/249 (93.98%), Postives = 242/249 (97.19%), Query Frame = 0


Query: 1   MLFAASFQSVSLFSNSSSAHFHFPSTKPLVSTRLSVRASSPDSDSNGLKVEYTPWLIVGL 60
           ML+AAS QSV LFSNSS+AHFH  STKPLVSTRLS+RAS PD+D NG+KVEYTPWLIVGL
Sbjct: 1   MLYAASVQSVCLFSNSSTAHFHPRSTKPLVSTRLSIRASLPDND-NGVKVEYTPWLIVGL 60

Query: 61  GNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF 120
           GNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF
Sbjct: 61  GNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF 120

Query: 121 CGESVGPLAAHYQIPLRHVLLTYDEMNLPNGVLRLQPKAGHGHHNGVKSVMGHLDGRREF 180
           CGESVGPLAAHYQIPLRH+LLTYDEM+LPNGVLRLQPK GHGHHNGVKSVMGHLDGRREF
Sbjct: 121 CGESVGPLAAHYQIPLRHILLTYDEMSLPNGVLRLQPKGGHGHHNGVKSVMGHLDGRREF 180

Query: 181 PRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNL 240
           PRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNL
Sbjct: 181 PRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNL 240

Query: 241 SQKYKYHKV 250
           +QKYKYHKV
Sbjct: 241 TQKYKYHKV 248

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BLAST of CsaV3_3G020220 vs. NCBI nr
Match: XP_022148094.1 (chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like [Momordica charantia])

HSP 1 Score: 446.4 bits (1147), Expect = 1.6e-121
Identity = 224/249 (89.96%), Postives = 231/249 (92.77%), Query Frame = 0


Query: 1   MLFAASFQSVSLFSNSSSAHFHFPSTKPLVSTRLSVRASSPDSDSNGLKVEYTPWLIVGL 60
           ML+A S QSV L SNSSSAHF     K LV TRLSVRAS  D+D NG+KVEYTPWLIVGL
Sbjct: 1   MLYAVSVQSVCLLSNSSSAHFRPRLRKRLVPTRLSVRASLLDND-NGVKVEYTPWLIVGL 60

Query: 61  GNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF 120
           GNPGNKYHGTRHNVGFEMIDSIAQAQ ILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF
Sbjct: 61  GNPGNKYHGTRHNVGFEMIDSIAQAQDILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF 120

Query: 121 CGESVGPLAAHYQIPLRHVLLTYDEMNLPNGVLRLQPKAGHGHHNGVKSVMGHLDGRREF 180
           CGESVGPLAAHYQIPLRH+LL YDEM+LPNGVLRLQPK GHGHHNGVKSVMGHLDGRREF
Sbjct: 121 CGESVGPLAAHYQIPLRHILLVYDEMSLPNGVLRLQPKGGHGHHNGVKSVMGHLDGRREF 180

Query: 181 PRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNL 240
           PRLCIGIGNPPGTMDMKAFLLQKF SVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNL
Sbjct: 181 PRLCIGIGNPPGTMDMKAFLLQKFGSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNL 240

Query: 241 SQKYKYHKV 250
           +QKYKY+KV
Sbjct: 241 TQKYKYNKV 248

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BLAST of CsaV3_3G020220 vs. NCBI nr
Match: XP_023523313.1 (chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 446.4 bits (1147), Expect = 1.6e-121
Identity = 223/249 (89.56%), Postives = 231/249 (92.77%), Query Frame = 0


Query: 1   MLFAASFQSVSLFSNSSSAHFHFPSTKPLVSTRLSVRASSPDSDSNGLKVEYTPWLIVGL 60
           ML+AAS  SV LFSNSS AHF     K LV TRLSVRAS PD+D NG+KVEYTPWLIVGL
Sbjct: 1   MLYAASVPSVCLFSNSSIAHFPSRFPKRLVPTRLSVRASLPDND-NGVKVEYTPWLIVGL 60

Query: 61  GNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF 120
           GNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF
Sbjct: 61  GNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF 120

Query: 121 CGESVGPLAAHYQIPLRHVLLTYDEMNLPNGVLRLQPKAGHGHHNGVKSVMGHLDGRREF 180
           CGESVGPLA HYQIPLRH+LL YDEM+LPNGVLRLQPK GHGHHNGVKSVMGHLDGRREF
Sbjct: 121 CGESVGPLAVHYQIPLRHILLVYDEMSLPNGVLRLQPKGGHGHHNGVKSVMGHLDGRREF 180

Query: 181 PRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNL 240
           PRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLAL GFS+ V+RFNL
Sbjct: 181 PRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALKGFSKGVDRFNL 240

Query: 241 SQKYKYHKV 250
           +QKYKYHKV
Sbjct: 241 TQKYKYHKV 248

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BLAST of CsaV3_3G020220 vs. ExPASy Swiss-Prot
Match: Q9LF14 (Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRS2B PE=2 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 2.2e-97
Identity = 169/230 (73.48%), Postives = 196/230 (85.22%), Query Frame = 0


Query: 21  FHFPSTKPLV-STRLSVRASSPDSDSNGLKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMI 80
           +HF + KP+    R  V +S+   + +  KVEYTPWLIVGLGNPGNKYHGTRHNVGFEMI
Sbjct: 11  YHFQTQKPVFRKQRFRVCSSTSGGEDDRFKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMI 70

Query: 81  DSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNFCGESVGPLAAHYQIPLRHV 140
           D +A+ +G+LMNTIQSKALIGIG+I +VPILLAKPQTYMNF GESVG LA+HY++PLRH+
Sbjct: 71  DVLARKEGVLMNTIQSKALIGIGAIEDVPILLAKPQTYMNFSGESVGSLASHYRVPLRHI 130

Query: 141 LLTYDEMNLPNGVLRLQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAF 200
           L+ YDEM LPNGVLRLQPK G G+HNGVKSVMGHLDGRR FPRL IGIG PPG MDMKAF
Sbjct: 131 LMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKPPGNMDMKAF 190

Query: 201 LLQKFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV 250
           LLQKFS +E+KQI+ ALEQG EAV+TL LNGF+Q ++RFNL QKYK+HKV
Sbjct: 191 LLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFNQGISRFNLVQKYKFHKV 240

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BLAST of CsaV3_3G020220 vs. ExPASy Swiss-Prot
Match: Q9FKN4 (Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRS2A PE=2 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 6.7e-91
Identity = 162/229 (70.74%), Postives = 184/229 (80.35%), Query Frame = 0


Query: 21  FHFPSTKPLVSTRLSVRASSPDSDSNGLKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMID 80
           + F  TK       S+RAS P SD+  LK EYTPWLIVGLGNPG KY+GTRHN+GFEMID
Sbjct: 18  YKFSQTKSNSKRFSSLRASLPVSDNKLLKFEYTPWLIVGLGNPGLKYYGTRHNIGFEMID 77

Query: 81  SIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNFCGESVGPLAAHYQIPLRHVL 140
            IA+A  I MNTIQSKAL+GIGS+GEVPILL KPQ YMNF GESVGPLAA+YQIPLRH+L
Sbjct: 78  HIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGESVGPLAAYYQIPLRHIL 137

Query: 141 LTYDEMNLPNGVLRLQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFL 200
           + YD+M L NGVLRLQPK GH  HNG+K+V  HL+G R +PRL IGIGNPPG MDMKAFL
Sbjct: 138 MIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRLSIGIGNPPGNMDMKAFL 197

Query: 201 LQKFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV 250
           LQKFS +ERKQ+D  LEQGVE V+TL   GFS  ++RFNL QKYK+HKV
Sbjct: 198 LQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQKYKFHKV 246

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BLAST of CsaV3_3G020220 vs. ExPASy Swiss-Prot
Match: Q9M5P4 (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays OX=4577 GN=CRS2 PE=1 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 1.6e-87
Identity = 165/256 (64.45%), Postives = 195/256 (76.17%), Query Frame = 0


Query: 1   MLFAASFQSVSLFSNSSSAHFHFPS---TKPLVSTR----LSVRASSPDSDSNGLKVEYT 60
           +L AA   + S FS      F  P    T PL   R     +V +S PD  +    VEYT
Sbjct: 3   LLAAAIPSTSSHFSAPFLPSFRMPRKSLTAPLHRIRRPRPFTVVSSVPDPAAG--PVEYT 62

Query: 61  PWLIVGLGNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAK 120
           PWLI GLGNPGNKY+GTRHNVGFEM+D IA  +GI MNTIQSK+L+GIGSIGEVP+L+ K
Sbjct: 63  PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVK 122

Query: 121 PQTYMNFCGESVGPLAAHYQIPLRHVLLTYDEMNLPNGVLRLQPKAGHGHHNGVKSVMGH 180
           PQ+YMN+ GE++GPLAA+YQ+PLRH+LL YD+ +LPNGVLRLQ K GHG HNG+++V+ H
Sbjct: 123 PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEH 182

Query: 181 LDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALNGFSQ 240
           LDGRREFPRL IGIG+PPG MD +AFLLQKFSS ER QID ALEQGV+AVRTL L GFS 
Sbjct: 183 LDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSG 242

Query: 241 RVNRFNLSQKYKYHKV 250
              RFNL QKYK+H+V
Sbjct: 243 STERFNLVQKYKFHRV 256

[Close]

BLAST of CsaV3_3G020220 vs. ExPASy Swiss-Prot
Match: Q5ZCL8 (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0132800 PE=2 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 5.9e-87
Identity = 153/226 (67.70%), Postives = 183/226 (80.97%), Query Frame = 0


Query: 24  PSTKPLVSTRLSVRASSPDSDSNGLKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMIDSIA 83
           P  +  +  R++V AS PD  +     EYTPWLI GLGNPG+KYHGTRHNVGFEM+D IA
Sbjct: 36  PLRRTRLRRRIAVVASVPDPAAR--PAEYTPWLIAGLGNPGSKYHGTRHNVGFEMVDRIA 95

Query: 84  QAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNFCGESVGPLAAHYQIPLRHVLLTY 143
           + +GI MNTIQSK+L+GIGSIGEVP+LL KPQ+Y+N+ GE++GPLAA+YQ+PLRH+L+ Y
Sbjct: 96  RDEGITMNTIQSKSLLGIGSIGEVPVLLVKPQSYINYSGEAIGPLAAYYQVPLRHILVMY 155

Query: 144 DEMNLPNGVLRLQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQK 203
           DEM+LPNGVLRLQ K GHG HNG+++VM  LD  RE PRL IGIG+PPG MD +AFLLQK
Sbjct: 156 DEMSLPNGVLRLQRKGGHGRHNGLQNVMECLDSSRELPRLSIGIGSPPGKMDTRAFLLQK 215

Query: 204 FSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV 250
           FSS ER QID ALEQGV+AVRTL L GFS  + RFNL QKYK+H V
Sbjct: 216 FSSEERLQIDTALEQGVDAVRTLVLKGFSGSIERFNLVQKYKFHSV 259

[Close]

BLAST of CsaV3_3G020220 vs. ExPASy Swiss-Prot
Match: Q6NLS8 (Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g19830 PE=2 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 4.9e-65
Identity = 115/197 (58.38%), Postives = 147/197 (74.62%), Query Frame = 0


Query: 52  YTPWLIVGLGNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILL 111
           + PWL +GLGNPG+KY GTRHN+GFEMID  A++ GI MN +  KA++G G + ++P++L
Sbjct: 16  HRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGFVADLPVIL 75

Query: 112 AKPQTYMNFCGESVGPLAAHYQIPLRHVLLTYDEMNLPNGVLRLQPKAGHGHHNGVKSVM 171
           AKPQTYMN  GES GPLAA+Y++PL  VL+ +D+M LP GVLRLQ K GHG HNG+KSVM
Sbjct: 76  AKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVM 135

Query: 172 GHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALNGF 231
            H  G REF RL IGIG PPG MD KAFLLQKFS   R+++D AL +GV+A++ +    F
Sbjct: 136 NHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKALAEGVDALKLVLAKDF 195

Query: 232 SQRVNRFNLSQKYKYHK 249
            +    FN+ QKYK+ K
Sbjct: 196 GESWRLFNVEQKYKHLK 212

[Close]

BLAST of CsaV3_3G020220 vs. ExPASy TrEMBL
Match: A0A0A0LCC6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G257600 PE=3 SV=1)

HSP 1 Score: 505.0 bits (1299), Expect = 1.8e-139
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0


Query: 1   MLFAASFQSVSLFSNSSSAHFHFPSTKPLVSTRLSVRASSPDSDSNGLKVEYTPWLIVGL 60
           MLFAASFQSVSLFSNSSSAHFHFPSTKPLVSTRLSVRASSPDSDSNGLKVEYTPWLIVGL
Sbjct: 1   MLFAASFQSVSLFSNSSSAHFHFPSTKPLVSTRLSVRASSPDSDSNGLKVEYTPWLIVGL 60

Query: 61  GNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF 120
           GNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF
Sbjct: 61  GNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF 120

Query: 121 CGESVGPLAAHYQIPLRHVLLTYDEMNLPNGVLRLQPKAGHGHHNGVKSVMGHLDGRREF 180
           CGESVGPLAAHYQIPLRHVLLTYDEMNLPNGVLRLQPKAGHGHHNGVKSVMGHLDGRREF
Sbjct: 121 CGESVGPLAAHYQIPLRHVLLTYDEMNLPNGVLRLQPKAGHGHHNGVKSVMGHLDGRREF 180

Query: 181 PRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNL 240
           PRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNL
Sbjct: 181 PRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNL 240

Query: 241 SQKYKYHKV 250
           SQKYKYHKV
Sbjct: 241 SQKYKYHKV 249

[Close]

BLAST of CsaV3_3G020220 vs. ExPASy TrEMBL
Match: A0A1S3CFG5 (chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500129 PE=3 SV=1)

HSP 1 Score: 485.3 bits (1248), Expect = 1.5e-133
Identity = 239/250 (95.60%), Postives = 246/250 (98.40%), Query Frame = 0


Query: 1   MLFAASFQSVSLFSNSSSAHFHFPSTKPLVSTRLSVRASSPDSD-SNGLKVEYTPWLIVG 60
           ML+AASFQSVSLFSNSS+AH+H PSTKPLVSTRLSVRAS PDSD +NG+KVEYTPWLIVG
Sbjct: 1   MLYAASFQSVSLFSNSSTAHYHSPSTKPLVSTRLSVRASLPDSDNNNGVKVEYTPWLIVG 60

Query: 61  LGNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMN 120
           LGNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMN
Sbjct: 61  LGNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMN 120

Query: 121 FCGESVGPLAAHYQIPLRHVLLTYDEMNLPNGVLRLQPKAGHGHHNGVKSVMGHLDGRRE 180
           FCGESVGPLAAHYQIPLRH+LLTYDEM+LPNGVLRLQPK GHGHHNGVKSVMGHLDGRRE
Sbjct: 121 FCGESVGPLAAHYQIPLRHILLTYDEMSLPNGVLRLQPKGGHGHHNGVKSVMGHLDGRRE 180

Query: 181 FPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFN 240
           FPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFN
Sbjct: 181 FPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFN 240

Query: 241 LSQKYKYHKV 250
           LSQKYKYHKV
Sbjct: 241 LSQKYKYHKV 250

[Close]

BLAST of CsaV3_3G020220 vs. ExPASy TrEMBL
Match: A0A6J1D2Z6 (chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111016856 PE=3 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 7.7e-122
Identity = 224/249 (89.96%), Postives = 231/249 (92.77%), Query Frame = 0


Query: 1   MLFAASFQSVSLFSNSSSAHFHFPSTKPLVSTRLSVRASSPDSDSNGLKVEYTPWLIVGL 60
           ML+A S QSV L SNSSSAHF     K LV TRLSVRAS  D+D NG+KVEYTPWLIVGL
Sbjct: 1   MLYAVSVQSVCLLSNSSSAHFRPRLRKRLVPTRLSVRASLLDND-NGVKVEYTPWLIVGL 60

Query: 61  GNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF 120
           GNPGNKYHGTRHNVGFEMIDSIAQAQ ILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF
Sbjct: 61  GNPGNKYHGTRHNVGFEMIDSIAQAQDILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF 120

Query: 121 CGESVGPLAAHYQIPLRHVLLTYDEMNLPNGVLRLQPKAGHGHHNGVKSVMGHLDGRREF 180
           CGESVGPLAAHYQIPLRH+LL YDEM+LPNGVLRLQPK GHGHHNGVKSVMGHLDGRREF
Sbjct: 121 CGESVGPLAAHYQIPLRHILLVYDEMSLPNGVLRLQPKGGHGHHNGVKSVMGHLDGRREF 180

Query: 181 PRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNL 240
           PRLCIGIGNPPGTMDMKAFLLQKF SVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNL
Sbjct: 181 PRLCIGIGNPPGTMDMKAFLLQKFGSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNL 240

Query: 241 SQKYKYHKV 250
           +QKYKY+KV
Sbjct: 241 TQKYKYNKV 248

[Close]

BLAST of CsaV3_3G020220 vs. ExPASy TrEMBL
Match: A0A6J1K6X4 (chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111492843 PE=3 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 1.3e-121
Identity = 223/249 (89.56%), Postives = 231/249 (92.77%), Query Frame = 0


Query: 1   MLFAASFQSVSLFSNSSSAHFHFPSTKPLVSTRLSVRASSPDSDSNGLKVEYTPWLIVGL 60
           ML+AAS  SV LFSNSSSAHF     K LV TRLSVRAS  D+D NG+KVEYTPWLIVGL
Sbjct: 1   MLYAASVPSVCLFSNSSSAHFPSRFPKRLVPTRLSVRASLQDND-NGVKVEYTPWLIVGL 60

Query: 61  GNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF 120
           GNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF
Sbjct: 61  GNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF 120

Query: 121 CGESVGPLAAHYQIPLRHVLLTYDEMNLPNGVLRLQPKAGHGHHNGVKSVMGHLDGRREF 180
           CGESVGPLA HYQIPLRH+LL YDEM+LPNGVLRLQPK GHGHHNGVKSVMGHLDGRREF
Sbjct: 121 CGESVGPLAVHYQIPLRHILLVYDEMSLPNGVLRLQPKGGHGHHNGVKSVMGHLDGRREF 180

Query: 181 PRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNL 240
           PRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLAL GFS+ V+RFNL
Sbjct: 181 PRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALKGFSKGVDRFNL 240

Query: 241 SQKYKYHKV 250
           +QKYKYHKV
Sbjct: 241 TQKYKYHKV 248

[Close]

BLAST of CsaV3_3G020220 vs. ExPASy TrEMBL
Match: A0A6J1G9M7 (chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111452203 PE=3 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 5.0e-121
Identity = 221/249 (88.76%), Postives = 231/249 (92.77%), Query Frame = 0


Query: 1   MLFAASFQSVSLFSNSSSAHFHFPSTKPLVSTRLSVRASSPDSDSNGLKVEYTPWLIVGL 60
           ML+AAS  SV LFSNSS AHF     K LV TRLSVRAS PD+D NG+KVEYTPWLIVGL
Sbjct: 1   MLYAASVPSVCLFSNSSIAHFPSRFPKRLVPTRLSVRASLPDND-NGVKVEYTPWLIVGL 60

Query: 61  GNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF 120
           GNPGNKYHGTRHNVGF+MIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF
Sbjct: 61  GNPGNKYHGTRHNVGFDMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNF 120

Query: 121 CGESVGPLAAHYQIPLRHVLLTYDEMNLPNGVLRLQPKAGHGHHNGVKSVMGHLDGRREF 180
           CGESVGPLA HYQIPLRH+LL YDEM+LPNGVLRLQPK GHGHHNGVKSVMGHLDGRREF
Sbjct: 121 CGESVGPLAVHYQIPLRHILLVYDEMSLPNGVLRLQPKGGHGHHNGVKSVMGHLDGRREF 180

Query: 181 PRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNL 240
           PRLCIGIGNPPGTMD+KAFLLQKFSSVERKQIDAALEQGVEAVRTLAL GFS+ V+RFNL
Sbjct: 181 PRLCIGIGNPPGTMDIKAFLLQKFSSVERKQIDAALEQGVEAVRTLALKGFSKGVDRFNL 240

Query: 241 SQKYKYHKV 250
           +QKYKYHKV
Sbjct: 241 TQKYKYHKV 248

[Close]

BLAST of CsaV3_3G020220 vs. TAIR 10
Match: AT5G16140.1 (Peptidyl-tRNA hydrolase family protein )

HSP 1 Score: 356.7 bits (914), Expect = 1.5e-98
Identity = 169/230 (73.48%), Postives = 196/230 (85.22%), Query Frame = 0


Query: 21  FHFPSTKPLV-STRLSVRASSPDSDSNGLKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMI 80
           +HF + KP+    R  V +S+   + +  KVEYTPWLIVGLGNPGNKYHGTRHNVGFEMI
Sbjct: 11  YHFQTQKPVFRKQRFRVCSSTSGGEDDRFKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMI 70

Query: 81  DSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNFCGESVGPLAAHYQIPLRHV 140
           D +A+ +G+LMNTIQSKALIGIG+I +VPILLAKPQTYMNF GESVG LA+HY++PLRH+
Sbjct: 71  DVLARKEGVLMNTIQSKALIGIGAIEDVPILLAKPQTYMNFSGESVGSLASHYRVPLRHI 130

Query: 141 LLTYDEMNLPNGVLRLQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAF 200
           L+ YDEM LPNGVLRLQPK G G+HNGVKSVMGHLDGRR FPRL IGIG PPG MDMKAF
Sbjct: 131 LMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKPPGNMDMKAF 190

Query: 201 LLQKFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV 250
           LLQKFS +E+KQI+ ALEQG EAV+TL LNGF+Q ++RFNL QKYK+HKV
Sbjct: 191 LLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFNQGISRFNLVQKYKFHKV 240

[Close]

BLAST of CsaV3_3G020220 vs. TAIR 10
Match: AT5G16140.2 (Peptidyl-tRNA hydrolase family protein )

HSP 1 Score: 356.7 bits (914), Expect = 1.5e-98
Identity = 169/230 (73.48%), Postives = 196/230 (85.22%), Query Frame = 0


Query: 21  FHFPSTKPLV-STRLSVRASSPDSDSNGLKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMI 80
           +HF + KP+    R  V +S+   + +  KVEYTPWLIVGLGNPGNKYHGTRHNVGFEMI
Sbjct: 11  YHFQTQKPVFRKQRFRVCSSTSGGEDDRFKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMI 70

Query: 81  DSIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNFCGESVGPLAAHYQIPLRHV 140
           D +A+ +G+LMNTIQSKALIGIG+I +VPILLAKPQTYMNF GESVG LA+HY++PLRH+
Sbjct: 71  DVLARKEGVLMNTIQSKALIGIGAIEDVPILLAKPQTYMNFSGESVGSLASHYRVPLRHI 130

Query: 141 LLTYDEMNLPNGVLRLQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAF 200
           L+ YDEM LPNGVLRLQPK G G+HNGVKSVMGHLDGRR FPRL IGIG PPG MDMKAF
Sbjct: 131 LMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKPPGNMDMKAF 190

Query: 201 LLQKFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV 250
           LLQKFS +E+KQI+ ALEQG EAV+TL LNGF+Q ++RFNL QKYK+HKV
Sbjct: 191 LLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFNQGISRFNLVQKYKFHKV 240

[Close]

BLAST of CsaV3_3G020220 vs. TAIR 10
Match: AT5G38290.2 (Peptidyl-tRNA hydrolase family protein )

HSP 1 Score: 335.1 bits (858), Expect = 4.8e-92
Identity = 162/229 (70.74%), Postives = 184/229 (80.35%), Query Frame = 0


Query: 21  FHFPSTKPLVSTRLSVRASSPDSDSNGLKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMID 80
           + F  TK       S+RAS P SD+  LK EYTPWLIVGLGNPG KY+GTRHN+GFEMID
Sbjct: 22  YKFSQTKSNSKRFSSLRASLPVSDNKLLKFEYTPWLIVGLGNPGLKYYGTRHNIGFEMID 81

Query: 81  SIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNFCGESVGPLAAHYQIPLRHVL 140
            IA+A  I MNTIQSKAL+GIGS+GEVPILL KPQ YMNF GESVGPLAA+YQIPLRH+L
Sbjct: 82  HIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGESVGPLAAYYQIPLRHIL 141

Query: 141 LTYDEMNLPNGVLRLQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFL 200
           + YD+M L NGVLRLQPK GH  HNG+K+V  HL+G R +PRL IGIGNPPG MDMKAFL
Sbjct: 142 MIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRLSIGIGNPPGNMDMKAFL 201

Query: 201 LQKFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV 250
           LQKFS +ERKQ+D  LEQGVE V+TL   GFS  ++RFNL QKYK+HKV
Sbjct: 202 LQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQKYKFHKV 250

[Close]

BLAST of CsaV3_3G020220 vs. TAIR 10
Match: AT5G38290.1 (Peptidyl-tRNA hydrolase family protein )

HSP 1 Score: 335.1 bits (858), Expect = 4.8e-92
Identity = 162/229 (70.74%), Postives = 184/229 (80.35%), Query Frame = 0


Query: 21  FHFPSTKPLVSTRLSVRASSPDSDSNGLKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMID 80
           + F  TK       S+RAS P SD+  LK EYTPWLIVGLGNPG KY+GTRHN+GFEMID
Sbjct: 18  YKFSQTKSNSKRFSSLRASLPVSDNKLLKFEYTPWLIVGLGNPGLKYYGTRHNIGFEMID 77

Query: 81  SIAQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNFCGESVGPLAAHYQIPLRHVL 140
            IA+A  I MNTIQSKAL+GIGS+GEVPILL KPQ YMNF GESVGPLAA+YQIPLRH+L
Sbjct: 78  HIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGESVGPLAAYYQIPLRHIL 137

Query: 141 LTYDEMNLPNGVLRLQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFL 200
           + YD+M L NGVLRLQPK GH  HNG+K+V  HL+G R +PRL IGIGNPPG MDMKAFL
Sbjct: 138 MIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRLSIGIGNPPGNMDMKAFL 197

Query: 201 LQKFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV 250
           LQKFS +ERKQ+D  LEQGVE V+TL   GFS  ++RFNL QKYK+HKV
Sbjct: 198 LQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQKYKFHKV 246

[Close]

BLAST of CsaV3_3G020220 vs. TAIR 10
Match: AT5G19830.1 (Peptidyl-tRNA hydrolase family protein )

HSP 1 Score: 249.2 bits (635), Expect = 3.5e-66
Identity = 115/197 (58.38%), Postives = 147/197 (74.62%), Query Frame = 0


Query: 52  YTPWLIVGLGNPGNKYHGTRHNVGFEMIDSIAQAQGILMNTIQSKALIGIGSIGEVPILL 111
           + PWL +GLGNPG+KY GTRHN+GFEMID  A++ GI MN +  KA++G G + ++P++L
Sbjct: 16  HRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGFVADLPVIL 75

Query: 112 AKPQTYMNFCGESVGPLAAHYQIPLRHVLLTYDEMNLPNGVLRLQPKAGHGHHNGVKSVM 171
           AKPQTYMN  GES GPLAA+Y++PL  VL+ +D+M LP GVLRLQ K GHG HNG+KSVM
Sbjct: 76  AKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVM 135

Query: 172 GHLDGRREFPRLCIGIGNPPGTMDMKAFLLQKFSSVERKQIDAALEQGVEAVRTLALNGF 231
            H  G REF RL IGIG PPG MD KAFLLQKFS   R+++D AL +GV+A++ +    F
Sbjct: 136 NHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKALAEGVDALKLVLAKDF 195

Query: 232 SQRVNRFNLSQKYKYHK 249
            +    FN+ QKYK+ K
Sbjct: 196 GESWRLFNVEQKYKHLK 212

The following BLAST results are available for this feature:

BLAST of CsaV3_3G020220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145630.1	3.8e-139	100.00	chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic [Cucum...	[more]
XP_008461557.1	3.1e-133	95.60	PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2-B, chloropla...	[more]
XP_038899626.1	5.4e-130	93.98	chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic [Benin...	[more]
XP_022148094.1	1.6e-121	89.96	chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like [...	[more]
XP_023523313.1	1.6e-121	89.56	chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like [...	[more]

BLAST of CsaV3_3G020220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LF14	2.2e-97	73.48	Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Ara...	[more]
Q9FKN4	6.7e-91	70.74	Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic OS=Ara...	[more]
Q9M5P4	1.6e-87	64.45	Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea m...	[more]
Q5ZCL8	5.9e-87	67.70	Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza...	[more]
Q6NLS8	4.9e-65	58.38	Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g19...	[more]

BLAST of CsaV3_3G020220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCC6	1.8e-139	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G257600 PE=3 SV=1	[more]
A0A1S3CFG5	1.5e-133	95.60	chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Cuc...	[more]
A0A6J1D2Z6	7.7e-122	89.96	chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like O...	[more]
A0A6J1K6X4	1.3e-121	89.56	chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like O...	[more]
A0A6J1G9M7	5.0e-121	88.76	chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like O...	[more]

BLAST of CsaV3_3G020220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G16140.1	1.5e-98	73.48	Peptidyl-tRNA hydrolase family protein	[more]
AT5G16140.2	1.5e-98	73.48	Peptidyl-tRNA hydrolase family protein	[more]
AT5G38290.2	4.8e-92	70.74	Peptidyl-tRNA hydrolase family protein	[more]
AT5G38290.1	4.8e-92	70.74	Peptidyl-tRNA hydrolase family protein	[more]
AT5G19830.1	3.5e-66	58.38	Peptidyl-tRNA hydrolase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001328	Peptidyl-tRNA hydrolase	PFAM	PF01195	Pept_tRNA_hydro	coord: 56..239 e-value: 5.9E-54 score: 182.7
IPR001328	Peptidyl-tRNA hydrolase	TIGRFAM	TIGR00447	TIGR00447	coord: 56..239 e-value: 2.1E-51 score: 172.2
IPR001328	Peptidyl-tRNA hydrolase	PANTHER	PTHR17224	PEPTIDYL-TRNA HYDROLASE	coord: 20..248
IPR001328	Peptidyl-tRNA hydrolase	HAMAP	MF_00083	Pept_tRNA_hydro_bact	coord: 54..232 score: 29.576025
IPR036416	Peptidyl-tRNA hydrolase superfamily	GENE3D	3.40.50.1470		coord: 50..249 e-value: 5.0E-73 score: 246.9
IPR036416	Peptidyl-tRNA hydrolase superfamily	SUPERFAMILY	53178	Peptidyl-tRNA hydrolase-like	coord: 53..239
None	No IPR available	PANTHER	PTHR17224:SF3	CHLOROPLASTIC GROUP IIB INTRON SPLICING FACILITATOR CRS2-B, CHLOROPLASTIC	coord: 20..248
None	No IPR available	CDD	cd02406	CRS2	coord: 53..243 e-value: 8.34449E-130 score: 362.952
IPR018171	Peptidyl-tRNA hydrolase, conserved site	PROSITE	PS01195	PEPT_TRNA_HYDROL_1	coord: 67..80
IPR018171	Peptidyl-tRNA hydrolase, conserved site	PROSITE	PS01196	PEPT_TRNA_HYDROL_2	coord: 160..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G020220.1	CsaV3_3G020220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004045	aminoacyl-tRNA hydrolase activity