CsaV3_3G018400 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G018400
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionRetrotrans_gag domain-containing protein
Locationchr3: 14122363 .. 14123000 (+)
RNA-Seq ExpressionCsaV3_3G018400
SyntenyCsaV3_3G018400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCACCCTTGCACTTTTGTCTGAGAACCCTATTTCTTACACTTTTGTCATTCACCTCGGTCGAGCAAGCATCGAGTTAGCCTCGGGATCCTTCAAATTCCTTCTGTACCTTCAATCTACGTTAAGCATCAAGATATTGCCCCAGGATTAAACTCTTGTCTTTAATCTTGCCCGAGATTCTATATGATTGCCCGAGATCCTTAATAATTTCCTTTCTGCTTCCAATCTCAATTGAGTAATACTCTACGATTCCCTTTATTTTTTAGGCACTTGTCTCACAATAAGAACGTTTTATAGTGAGGCTTTCTATTTATTAGGTACACAATGACCATAGTGGATACATAAAGAGAAAGATGTAGGAGGTTCGAGAATGGTTTAAGATCAGAAATTAGAACCCTTGTCAAAACCATCGTAGTAAGATATGATTATGCAGAATTGGTGGACGAGACTCTACACATTGAAAAGAATTTAAAAGGAAAACGACCAAGTTTGGTGGTAAGTGGAGAAGGAGAAAAAGAAAGTGTTGAAGATTTTAGTAAAATGTCTAAGCCTACATTTAGTCGAGGATCAGATTGGAGTGGCGATACAAGGTTTGGGTGTATCCGAATGCAACAAAAGACATTTTGGGGCTTGTAA

mRNA sequence

ATGTTCACCCTTGCACTTTTGTCTGAGAACCCTATTTCTTACACTTTTGTCATTCACCTCGGTCGAGCAAGCATCGAGTTAGCCTCGGGATCCTTCAAATTCCTTCTGTACCTTCAATCTACGAGGTTCGAGAATGGTTTAAGATCAGAAATTAGAACCCTTGTCAAAACCATCGTAGTAAGATATGATTATGCAGAATTGGTGGACGAGACTCTACACATTGAAAAGAATTTAAAAGGAAAACGACCAAGTTTGGTGGTAAGTGGAGAAGGAGAAAAAGAAAGTGTTGAAGATTTTAGTAAAATGTCTAAGCCTACATTTAGTCGAGGATCAGATTGGAGTGGCGATACAAGGTTTGGGTGTATCCGAATGCAACAAAAGACATTTTGGGGCTTGTAA

Coding sequence (CDS)

ATGTTCACCCTTGCACTTTTGTCTGAGAACCCTATTTCTTACACTTTTGTCATTCACCTCGGTCGAGCAAGCATCGAGTTAGCCTCGGGATCCTTCAAATTCCTTCTGTACCTTCAATCTACGAGGTTCGAGAATGGTTTAAGATCAGAAATTAGAACCCTTGTCAAAACCATCGTAGTAAGATATGATTATGCAGAATTGGTGGACGAGACTCTACACATTGAAAAGAATTTAAAAGGAAAACGACCAAGTTTGGTGGTAAGTGGAGAAGGAGAAAAAGAAAGTGTTGAAGATTTTAGTAAAATGTCTAAGCCTACATTTAGTCGAGGATCAGATTGGAGTGGCGATACAAGGTTTGGGTGTATCCGAATGCAACAAAAGACATTTTGGGGCTTGTAA

Protein sequence

MFTLALLSENPISYTFVIHLGRASIELASGSFKFLLYLQSTRFENGLRSEIRTLVKTIVVRYDYAELVDETLHIEKNLKGKRPSLVVSGEGEKESVEDFSKMSKPTFSRGSDWSGDTRFGCIRMQQKTFWGL*
Homology
[Close]
BLAST of CsaV3_3G018400 vs. NCBI nr
Match: KGN57517.1 (hypothetical protein Csa_010516 [Cucumis sativus])

HSP 1 Score: 262.7 bits (670), Expect = 1.7e-66
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0 

Query: 1   MFTLALLSENPISYTFVIHLGRASIELASGSFKFLLYLQSTRFENGLRSEIRTLVKTIVV 60
           MFTLALLSENPISYTFVIHLGRASIELASGSFKFLLYLQSTRFENGLRSEIRTLVKTIVV
Sbjct: 1   MFTLALLSENPISYTFVIHLGRASIELASGSFKFLLYLQSTRFENGLRSEIRTLVKTIVV 60

Query: 61  RYDYAELVDETLHIEKNLKGKRPSLVVSGEGEKESVEDFSKMSKPTFSRGSDWSGDTRFG 120
           RYDYAELVDETLHIEKNLKGKRPSLVVSGEGEKESVEDFSKMSKPTFSRGSDWSGDTRFG
Sbjct: 61  RYDYAELVDETLHIEKNLKGKRPSLVVSGEGEKESVEDFSKMSKPTFSRGSDWSGDTRFG 120

Query: 121 CIRMQQKTFWGL 133
           CIRMQQKTFWGL
Sbjct: 121 CIRMQQKTFWGL 132

[Close]
BLAST of CsaV3_3G018400 vs. NCBI nr
Match: KAA0035974.1 (hypothetical protein E6C27_scaffold56G001830 [Cucumis melo var. makuwa] >TYK30429.1 hypothetical protein E5676_scaffold349G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 6.9e-07
Identity = 39/80 (48.75%), Postives = 50/80 (62.50%), Query Frame = 0 

Query: 42  RFENGLRSEIRTLVKTIVVRYDYAELVDETLHIEKNLKGKRPSLVVSGEGEKESVEDFSK 101
           RF +GLR +IRT V   VVR DYA+LVD TL +EK++  K  S  +SGE EK S+E  +K
Sbjct: 72  RFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEEEKGSIE--NK 131

Query: 102 MSKPTFSRGSDWSGDTRFGC 122
             K   S+ S WS D +  C
Sbjct: 132 KIKTIVSQESCWSSDKKQRC 149

[Close]
BLAST of CsaV3_3G018400 vs. NCBI nr
Match: KAA0062421.1 (hypothetical protein E6C27_scaffold154G002300 [Cucumis melo var. makuwa] >TYK26561.1 hypothetical protein E5676_scaffold313G001620 [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 7.6e-06
Identity = 39/80 (48.75%), Postives = 50/80 (62.50%), Query Frame = 0 

Query: 42  RFENGLRSEIRTLVKTIVVRYDYAELVDETLHIEKNLKGKRPSLVVSGEGEKESVEDFSK 101
           +F  GLR +IRT V  IV+R DYA LVD  L +EK+L  KRPS  +S E E  SVE  +K
Sbjct: 46  QFVRGLRGKIRTSVVPIVIRSDYAYLVDVALWVEKSLGMKRPSYELS-EEESGSVE--TK 105

Query: 102 MSKPTFSRGSDWSGDTRFGC 122
            +K   S+GS W+ D +  C
Sbjct: 106 KAKTIVSQGSHWTSDQKPQC 122

[Close]
BLAST of CsaV3_3G018400 vs. ExPASy TrEMBL
Match: A0A0A0LA91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G202750 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 8.4e-67
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0 

Query: 1   MFTLALLSENPISYTFVIHLGRASIELASGSFKFLLYLQSTRFENGLRSEIRTLVKTIVV 60
           MFTLALLSENPISYTFVIHLGRASIELASGSFKFLLYLQSTRFENGLRSEIRTLVKTIVV
Sbjct: 1   MFTLALLSENPISYTFVIHLGRASIELASGSFKFLLYLQSTRFENGLRSEIRTLVKTIVV 60

Query: 61  RYDYAELVDETLHIEKNLKGKRPSLVVSGEGEKESVEDFSKMSKPTFSRGSDWSGDTRFG 120
           RYDYAELVDETLHIEKNLKGKRPSLVVSGEGEKESVEDFSKMSKPTFSRGSDWSGDTRFG
Sbjct: 61  RYDYAELVDETLHIEKNLKGKRPSLVVSGEGEKESVEDFSKMSKPTFSRGSDWSGDTRFG 120

Query: 121 CIRMQQKTFWGL 133
           CIRMQQKTFWGL
Sbjct: 121 CIRMQQKTFWGL 132

[Close]
BLAST of CsaV3_3G018400 vs. ExPASy TrEMBL
Match: A0A5D3E3Q3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00360 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.3e-07
Identity = 39/80 (48.75%), Postives = 50/80 (62.50%), Query Frame = 0 

Query: 42  RFENGLRSEIRTLVKTIVVRYDYAELVDETLHIEKNLKGKRPSLVVSGEGEKESVEDFSK 101
           RF +GLR +IRT V   VVR DYA+LVD TL +EK++  K  S  +SGE EK S+E  +K
Sbjct: 72  RFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEEEKGSIE--NK 131

Query: 102 MSKPTFSRGSDWSGDTRFGC 122
             K   S+ S WS D +  C
Sbjct: 132 KIKTIVSQESCWSSDKKQRC 149

[Close]
BLAST of CsaV3_3G018400 vs. ExPASy TrEMBL
Match: A0A5D3DS44 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001620 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.7e-06
Identity = 39/80 (48.75%), Postives = 50/80 (62.50%), Query Frame = 0 

Query: 42  RFENGLRSEIRTLVKTIVVRYDYAELVDETLHIEKNLKGKRPSLVVSGEGEKESVEDFSK 101
           +F  GLR +IRT V  IV+R DYA LVD  L +EK+L  KRPS  +S E E  SVE  +K
Sbjct: 46  QFVRGLRGKIRTSVVPIVIRSDYAYLVDVALWVEKSLGMKRPSYELS-EEESGSVE--TK 105

Query: 102 MSKPTFSRGSDWSGDTRFGC 122
            +K   S+GS W+ D +  C
Sbjct: 106 KAKTIVSQGSHWTSDQKPQC 122

The following BLAST results are available for this feature:
BLAST of CsaV3_3G018400 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57517.11.7e-66100.00hypothetical protein Csa_010516 [Cucumis sativus][more]
KAA0035974.16.9e-0748.75hypothetical protein E6C27_scaffold56G001830 [Cucumis melo var. makuwa] >TYK3042... [more]
KAA0062421.17.6e-0648.75hypothetical protein E6C27_scaffold154G002300 [Cucumis melo var. makuwa] >TYK265... [more]
BLAST of CsaV3_3G018400 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G018400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LA918.4e-67100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G202750 PE=4 SV=1[more]
A0A5D3E3Q33.3e-0748.75Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3DS443.7e-0648.75Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CsaV3_3G018400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G018400.1CsaV3_3G018400.1mRNA