CsaV3_3G017840 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G017840
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	40S ribosomal protein S19
Location	chr3: 13446626 .. 13448865 (+)
RNA-Seq Expression	CsaV3_3G017840
Synteny	CsaV3_3G017840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGAATTGATAGGCCTCGTAACACCAAGGTGTACGTACACATAAGAGGAAAGAGAGAAAAGGGGTGTGTGATACGTGTAAGGGAATTGTTGAGTGGTGTGGGCTTATAGGAATATTGTTAGTTAGGGGCCAGTTATAGGAGTATTTATGGCGTGAGGTTGTAGGAGTGAATCATCTTTTTGCTATTTTCTCTTTGGTTGTAATAGCTGTCTGTAAGAAGCTTAGGATTGATTGGGGCTCTCGAATTCTCCTACTGTGTTGATAAATAAATTGTTTAGGCTAAGGCCTATCGATTTGGTATCATAGCAGTAAGATTTGGGCAGAGTGGTTAAGATGGAAGGTAGAGTAAGTGCGTTGGAGGAGAAGATGGAGGAAATCGATGACAACCAATCATGGTTGGATTCGAAGGTGGAGGCTAGATTTAAGGAAGCGAATGGGAGGTTCGTGGTAGTGAATGAGCAGATGAGTTTAGTGTTATCGCATTTGGATGTGTTAATGATCGTGGATTGACATCCTCGAAGAGAACAATGTCGGAAAAGGGAAAAAAATTGATGAATTCAATGCTAGACGATTAGGAGAATGAAGGAGAATGTAAGAGTGGAATTAATGCACCTGGAATTAAAGAGATACTATTGTTTGACATGAGGCCGAAGAAGTTGGAGGTGCCAATATTCAAAGGTGAAGTGAGTGAGAACCCCGATGGTGGGTTACACTGGGTAGAATGTTATTTTGTCGTAAATTGCTTGACGAAGAAGGGCAAGTTAGACGCATTAGTGTTGTGATTCGAAGGAGAGGTGCTCAAATGGTATCAATGGGAGGAAGATTGGCAGCCTGTGGGTAGTTGGTTACAATTTCATGAGCTGTTGTTGGATCGATTACTCCCGTTGAATGAAGTTGACTATTACGCACGTTTTATTAGGCTGCAACAAGAAATGATAGTAAGGGAGTACCTGTGAGACCTGTTTCTAATTTGAGTACAAGAAGAAAAATCTGACTAAGTGTTTTGAAACTTTGTGTTTTGGATAAGAGATGTGTTGAAGTAACACTTCGTGATAAGAAGTTGATGTTTGAATCAATCCACGGAAAGGATTGAGTGATAAAAATGTATATGGTTAAGTATAACTTTTGCGATTAAGAAGTTAGTTCGCGACGAAGTTGGGTAGTTCGCGAGAAGGGTTATGTGTTAAGGCCTTCGAAAGTTATGTTAAGTGGTTGAAGTTATTCTCGGAATGGTTAGACGAGAAGAAATGTTTGGTGAGAAAGTGTCAAATCTGATTTGACAGGGGTTAAAACGTGTAAGATTAAGAGTTTAAGCATGGTTAAGATAAATCTTGATTTTACAGGTGTAAAGTTTTAAGTAAGAGCTGACAATTGGACAAGGGTTTAAGGATGACTAATCCAGGTTAAAAGAGTAGTAGAAATACTGGATCTGGGTCATTAAGTAAAGGGGATTTTTGAGAAATTTTGAAGTGTTGAAGTGTTGCCGTTTTGGTTTCGTGAGAAGACTACGCGAGAAAGAAGAAGAAGAGATTTCCAGTTCTAAGGCTAAGTATTTGTGAGTGCTTTATTTCAAAGTGATCTTTTCTTTGAGTTTAAGAAAGGCGAAAACCCTATTTCAGCAATCAAAGCTTTTGCGGCCTTTGCTCACTGAATTCAACAACCATGGCCACTGCTAGGATCGTCAAAGATGTCTCTCCTCACGAGTTTGTTAAGGCCTATGCCGCTCATCTCAAACGATCCGAAAAGGTTGAACTTCCACCATGGACGGATATTGTCATAACTGCAAGATTCAAGGAACTTGCTCGATATGATGCAGATTGGTACTATGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGAGGAGGTCTTGGTGTTGGAGCATTCAAGCGGATTTACAATGGAAGCAAGAGGAACGGAAGTCGCCCTCCACACTTCTGTGAAAGCAGTGGAGCCATTGTTCGCCACATTCTACAACAATTGCAGGAGATGAACATTGTTGATGTGGACCCAAAGGGTGGAAAGAGAATTACTTCAAGTGGCTGATGAGATCTCGATCAAGTTGCTACCGTATTGTTGTTGTCCCTTGATTGATCAATTACCTCTATTGTTAAATTAGAGACTTATGTTTTGCTGATGAGAAACAATTTCTTATGCGTCATTAAAATTTTGGATGTAGCTGTTGAAAGATTTTCCATATGAATATGCTTACTCTTGTTTTTTCATGGGTTTTGAAT

mRNA sequence

ATGGCCACTGCTAGGATCGTCAAAGATGTCTCTCCTCACGAGTTTGTTAAGGCCTATGCCGCTCATCTCAAACGATCCGAAAAGGTTGAACTTCCACCATGGACGGATATTGTCATAACTGCAAGATTCAAGGAACTTGCTCGATATGATGCAGATTGGTACTATGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGAGGAGGTCTTGGTGTTGGAGCATTCAAGCGGATTTACAATGGAAGCAAGAGGAACGGAAGTCGCCCTCCACACTTCTGTGAAAGCAGTGGAGCCATTGTTCGCCACATTCTACAACAATTGCAGGAGATGAACATTGTTGATGTGGACCCAAAGGGTGGAAAGAGAATTACTTCAAGTGGCTGA

Coding sequence (CDS)

ATGGCCACTGCTAGGATCGTCAAAGATGTCTCTCCTCACGAGTTTGTTAAGGCCTATGCCGCTCATCTCAAACGATCCGAAAAGGTTGAACTTCCACCATGGACGGATATTGTCATAACTGCAAGATTCAAGGAACTTGCTCGATATGATGCAGATTGGTACTATGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGAGGAGGTCTTGGTGTTGGAGCATTCAAGCGGATTTACAATGGAAGCAAGAGGAACGGAAGTCGCCCTCCACACTTCTGTGAAAGCAGTGGAGCCATTGTTCGCCACATTCTACAACAATTGCAGGAGATGAACATTGTTGATGTGGACCCAAAGGGTGGAAAGAGAATTACTTCAAGTGGCTGA

Protein sequence

MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKGGKRITSSG*

Homology

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BLAST of CsaV3_3G017840 vs. NCBI nr
Match: XP_011651209.1 (40S ribosomal protein S19-3 [Cucumis sativus] >KGN57458.1 hypothetical protein Csa_011379 [Cucumis sativus])

HSP 1 Score: 263.5 bits (672), Expect = 9.8e-67
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS
Sbjct: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           GKRITSSG
Sbjct: 121 GKRITSSG 128

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BLAST of CsaV3_3G017840 vs. NCBI nr
Match: KAG6593129.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 246.5 bits (628), Expect = 1.2e-61
Identity = 120/128 (93.75%), Postives = 121/128 (94.53%), Query Frame = 0


Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATAR VKDVSPHEFVKAYAAHLKRS KVELPPWTDIV TARFKELA YD DWYYVRAAS
Sbjct: 542 MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 601

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI RHILQQLQEMNIVDVDPKG
Sbjct: 602 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 661

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 662 GRRITSSG 669

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BLAST of CsaV3_3G017840 vs. NCBI nr
Match: XP_022954406.1 (40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022960517.1 40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022992561.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023004681.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023547478.1 40S ribosomal protein S19-3-like [Cucurbita pepo subsp. pepo] >KAG6575902.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014435.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma] >KAG7027262.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 246.5 bits (628), Expect = 1.2e-61
Identity = 120/128 (93.75%), Postives = 121/128 (94.53%), Query Frame = 0


Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATAR VKDVSPHEFVKAYAAHLKRS KVELPPWTDIV TARFKELA YD DWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI RHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

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BLAST of CsaV3_3G017840 vs. NCBI nr
Match: XP_004148892.2 (40S ribosomal protein S19-3 [Cucumis sativus] >XP_008451369.1 PREDICTED: 40S ribosomal protein S19-3-like [Cucumis melo] >XP_038896797.1 40S ribosomal protein S19-3-like [Benincasa hispida] >KAA0064090.1 40S ribosomal protein S19-3-like [Cucumis melo var. makuwa] >KGN45368.2 hypothetical protein Csa_016233 [Cucumis sativus] >TYK18491.1 40S ribosomal protein S19-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 246.5 bits (628), Expect = 1.2e-61
Identity = 120/128 (93.75%), Postives = 121/128 (94.53%), Query Frame = 0


Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATAR VKDVSPHEFVKAYAAHLKRS KVELPPW DIV TARFKELA YDADWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI RHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

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BLAST of CsaV3_3G017840 vs. NCBI nr
Match: XP_004141465.1 (40S ribosomal protein S19-3 [Cucumis sativus] >XP_008459377.1 PREDICTED: 40S ribosomal protein S19-3 [Cucumis melo] >XP_038890519.1 40S ribosomal protein S19-3 [Benincasa hispida] >KAA0039442.1 40S ribosomal protein S19-3-like [Cucumis melo var. makuwa] >KGN52503.1 hypothetical protein Csa_008239 [Cucumis sativus] >TYK00631.1 40S ribosomal protein S19-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 246.1 bits (627), Expect = 1.6e-61
Identity = 119/128 (92.97%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATA+ VKDVSPHEFVKAYAAHLKRS KVELPPWTDIV TARFKELA YDADWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI RHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

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BLAST of CsaV3_3G017840 vs. ExPASy Swiss-Prot
Match: Q9FNP8 (40S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 5.6e-57
Identity = 103/128 (80.47%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MAT + VKDVSPHEFVKAYAAHLKRS K+ELP WTDIV T + KELA YD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIY GSKRNGSRPPHFC+SSG + RHILQQLQ MNIVD+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 GKRITSSG 129
           G++ITSSG
Sbjct: 121 GRKITSSG 128

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BLAST of CsaV3_3G017840 vs. ExPASy Swiss-Prot
Match: Q9SGA6 (40S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 3.6e-56
Identity = 101/128 (78.91%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MAT + VKDVSPH+FVKAYA+HLKRS K+ELP WTDIV T + KELA YD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIY GSKRNGSRPPHFC+SSG I RHILQQL+ MNIV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]

BLAST of CsaV3_3G017840 vs. ExPASy Swiss-Prot
Match: Q9LF30 (40S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 8.1e-56
Identity = 102/128 (79.69%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MAT + VKDVSPH+FVKAYA+HLKRS K+ELP WTDIV T R KELA YD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIY GSKRNGSRPPHFC+SSG I RHILQQL+ M+IV++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]

BLAST of CsaV3_3G017840 vs. ExPASy Swiss-Prot
Match: P40978 (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=2 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 5.4e-52
Identity = 96/127 (75.59%), Postives = 110/127 (86.61%), Query Frame = 0


Query: 2   ATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASM 61
           +TAR VKDV+PHEFVKAY+AHLKRS K+ELP W DIV TARFKEL  YD DWYY RAAS+
Sbjct: 4   STARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASI 63

Query: 62  ARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKGG 121
           ARKIYLR G+GVG F++IY G +RNGSRPPHFC+SSGAI R+ILQQLQ+M I+DVDPKGG
Sbjct: 64  ARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGG 123

Query: 122 KRITSSG 129
           + ITS G
Sbjct: 124 RLITSQG 130

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BLAST of CsaV3_3G017840 vs. ExPASy Swiss-Prot
Match: Q94613 (40S ribosomal protein S19 OS=Mya arenaria OX=6604 GN=RPS19 PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 4.2e-36
Identity = 64/122 (52.46%), Postives = 93/122 (76.23%), Query Frame = 0


Query: 7   VKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIY 66
           VKDVS HEF +A+AA LK+S K+++P WTD V T  FKEL+ Y+ DWY++RAAS+ R +Y
Sbjct: 5   VKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHLY 64

Query: 67  LRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKGGKRITS 126
           +R   G+G+F++IY G +R G+ P HFC+++G+I R +LQ L+ + IV+ DP GG+R+TS
Sbjct: 65  IRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRRLTS 124

Query: 127 SG 129
            G
Sbjct: 125 QG 126

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BLAST of CsaV3_3G017840 vs. ExPASy TrEMBL
Match: A0A0A0L6V0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G187320 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 4.8e-67
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS
Sbjct: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           GKRITSSG
Sbjct: 121 GKRITSSG 128

[Close]

BLAST of CsaV3_3G017840 vs. ExPASy TrEMBL
Match: A0A0A0K500 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390010 PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 4.2e-63
Identity = 122/128 (95.31%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATAR VKDVSPHEFVKAYAAHLKRS KVELPPW DIV TARFKELA YDADWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]

BLAST of CsaV3_3G017840 vs. ExPASy TrEMBL
Match: A0A6J1JTW8 (40S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111488847 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.0e-62
Identity = 120/128 (93.75%), Postives = 121/128 (94.53%), Query Frame = 0


Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATAR VKDVSPHEFVKAYAAHLKRS KVELPPWTDIV TARFKELA YD DWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI RHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]

BLAST of CsaV3_3G017840 vs. ExPASy TrEMBL
Match: A0A6J1H7M6 (40S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111461230 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.0e-62
Identity = 120/128 (93.75%), Postives = 121/128 (94.53%), Query Frame = 0


Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATAR VKDVSPHEFVKAYAAHLKRS KVELPPWTDIV TARFKELA YD DWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI RHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]

BLAST of CsaV3_3G017840 vs. ExPASy TrEMBL
Match: A0A5D3D4N1 (40S ribosomal protein S19-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2032G00080 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.0e-62
Identity = 120/128 (93.75%), Postives = 121/128 (94.53%), Query Frame = 0


Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MATAR VKDVSPHEFVKAYAAHLKRS KVELPPW DIV TARFKELA YDADWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI RHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]

BLAST of CsaV3_3G017840 vs. TAIR 10
Match: AT5G61170.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 221.5 bits (563), Expect = 4.0e-58
Identity = 103/128 (80.47%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MAT + VKDVSPHEFVKAYAAHLKRS K+ELP WTDIV T + KELA YD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIY GSKRNGSRPPHFC+SSG + RHILQQLQ MNIVD+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 GKRITSSG 129
           G++ITSSG
Sbjct: 121 GRKITSSG 128

[Close]

BLAST of CsaV3_3G017840 vs. TAIR 10
Match: AT3G02080.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 218.8 bits (556), Expect = 2.6e-57
Identity = 101/128 (78.91%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MAT + VKDVSPH+FVKAYA+HLKRS K+ELP WTDIV T + KELA YD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIY GSKRNGSRPPHFC+SSG I RHILQQL+ MNIV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

[Close]

BLAST of CsaV3_3G017840 vs. TAIR 10
Match: AT5G15520.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 217.6 bits (553), Expect = 5.8e-57
Identity = 102/128 (79.69%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 1   MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAAS 60
           MAT + VKDVSPH+FVKAYA+HLKRS K+ELP WTDIV T R KELA YD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIY GSKRNGSRPPHFC+SSG I RHILQQL+ M+IV++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 GKRITSSG 129
           G+RITSSG
Sbjct: 121 GRRITSSG 128

The following BLAST results are available for this feature:

BLAST of CsaV3_3G017840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651209.1	9.8e-67	100.00	40S ribosomal protein S19-3 [Cucumis sativus] >KGN57458.1 hypothetical protein C...	[more]
KAG6593129.1	1.2e-61	93.75	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
XP_022954406.1	1.2e-61	93.75	40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022960517.1 40S riboso...	[more]
XP_004148892.2	1.2e-61	93.75	40S ribosomal protein S19-3 [Cucumis sativus] >XP_008451369.1 PREDICTED: 40S rib...	[more]
XP_004141465.1	1.6e-61	92.97	40S ribosomal protein S19-3 [Cucumis sativus] >XP_008459377.1 PREDICTED: 40S rib...	[more]

BLAST of CsaV3_3G017840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNP8	5.6e-57	80.47	40S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1	[more]
Q9SGA6	3.6e-56	78.91	40S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1	[more]
Q9LF30	8.1e-56	79.69	40S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1	[more]
P40978	5.4e-52	75.59	40S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=...	[more]
Q94613	4.2e-36	52.46	40S ribosomal protein S19 OS=Mya arenaria OX=6604 GN=RPS19 PE=2 SV=1	[more]

BLAST of CsaV3_3G017840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6V0	4.8e-67	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G187320 PE=3 SV=1	[more]
A0A0A0K500	4.2e-63	95.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390010 PE=3 SV=1	[more]
A0A6J1JTW8	6.0e-62	93.75	40S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111488847 PE=...	[more]
A0A6J1H7M6	6.0e-62	93.75	40S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111461230 P...	[more]
A0A5D3D4N1	6.0e-62	93.75	40S ribosomal protein S19-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of CsaV3_3G017840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61170.1	4.0e-58	80.47	Ribosomal protein S19e family protein	[more]
AT3G02080.1	2.6e-57	78.91	Ribosomal protein S19e family protein	[more]
AT5G15520.1	5.8e-57	79.69	Ribosomal protein S19e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001266	Ribosomal protein S19e	SMART	SM01413	Ribosomal_S19e_2	coord: 6..128 e-value: 1.4E-54 score: 197.3
IPR001266	Ribosomal protein S19e	PFAM	PF01090	Ribosomal_S19e	coord: 7..128 e-value: 6.0E-46 score: 155.5
IPR001266	Ribosomal protein S19e	PANTHER	PTHR11710	40S RIBOSOMAL PROTEIN S19	coord: 3..128
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 1..128 e-value: 1.0E-58 score: 199.6
None	No IPR available	PANTHER	PTHR11710:SF20	40S RIBOSOMAL PROTEIN S19-3	coord: 3..128
IPR018277	Ribosomal protein S19e, conserved site	PROSITE	PS00628	RIBOSOMAL_S19E	coord: 90..109
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 7..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G017840.1	CsaV3_3G017840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome