CsaV3_3G016720 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G016720
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionPentatricopeptide repeat-containing protein
Locationchr3: 12535655 .. 12536463 (+)
RNA-Seq ExpressionCsaV3_3G016720
SyntenyCsaV3_3G016720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAATCCCTAGATCATTTTGTCGCCTGTTCAGCACTTTCTCAAAATCACAAAGAGCCATAAGTAATTCAACCTCTTTGAATTCGATCAAGGAGCTTCACGCCCAGCTTGTAAGAGCCCAAATGCACATCGACCCATCTTCTATCTCTGAAGTTATCAAGCATTATGCTCTTTCTCCACAATCTTTGCCCAAGGCCCATTTCGTTTTTAACCAAATTCAGCGACCCACATTGCTAGTTTGGAACCACATGATCCACGGTCTATCAAAGAGCGATCGACCTAATGATGCAATTCATTTCTATAATACCATGTATTACAAAGGAATACAGGGGAGTCATTTGACTTTCATATTTTTATTCAAGTCTTGTGCAAGAGTTTCTGATGTAAGGCAAGGCCAGATGGTTCGTGTTCATTCTATGAAACTTGGGTTTGAATCCTATCTTTTTGTTTCAAATGCCTTGATTCATATGTATGTGTGCTTTGGTGAGTTGGCCATGGCACAAAAGGTGTTCGATGGAATGTTGGAAAGAGATGTAGTTTCATGGAATTCTATAATTTGTGGATATTATCAATTTAATAGATTTAAGAAGGTCTTGGATCTTTTTAGGGAAATGCAGGCTATAAATGTGAGAGCTGATTCTGTGACAATGATGAAAGCTATCTCAGCAACCTGCTTTTTAAGTGAATGGGAAATGGGAGACTATTTGGTGAAGTACATTGATGAACATGGTGTTGTGGTTGATCTCTACTTAGGAAACACTTTGATAGATATGTATGGACGCCGTGGTATGATAGATTTTGCAGGTAG

mRNA sequence

ATGCAAATCCCTAGATCATTTTGTCGCCTGTTCAGCACTTTCTCAAAATCACAAAGAGCCATAAGTAATTCAACCTCTTTGAATTCGATCAAGGAGCTTCACGCCCAGCTTGTAAGAGCCCAAATGCACATCGACCCATCTTCTATCTCTGAAGTTATCAAGCATTATGCTCTTTCTCCACAATCTTTGCCCAAGGCCCATTTCGTTTTTAACCAAATTCAGCGACCCACATTGCTAGTTTGGAACCACATGATCCACGGTCTATCAAAGAGCGATCGACCTAATGATGCAATTCATTTCTATAATACCATGTATTACAAAGGAATACAGGGGAGTCATTTGACTTTCATATTTTTATTCAAGTCTTGTGCAAGAGTTTCTGATGTAAGGCAAGGCCAGATGGTTCGTGTTCATTCTATGAAACTTGGGTTTGAATCCTATCTTTTTGTTTCAAATGCCTTGATTCATATGTATGTGTGCTTTGGTGAGTTGGCCATGGCACAAAAGGTGTTCGATGGAATGTTGGAAAGAGATGTAGTTTCATGGAATTCTATAATTTGTGGATATTATCAATTTAATAGATTTAAGAAGGTCTTGGATCTTTTTAGGGAAATGCAGGCTATAAATGTGAGAGCTGATTCTGTGACAATGATGAAAGCTATCTCAGCAACCTGCTTTTTAAGTGAATGGGAAATGGGAGACTATTTGGTGAAGAAACACTTTGATAGATATGTATGGACGCCGTGGTATGATAGATTTTGCAGGTAG

Coding sequence (CDS)

ATGCAAATCCCTAGATCATTTTGTCGCCTGTTCAGCACTTTCTCAAAATCACAAAGAGCCATAAGTAATTCAACCTCTTTGAATTCGATCAAGGAGCTTCACGCCCAGCTTGTAAGAGCCCAAATGCACATCGACCCATCTTCTATCTCTGAAGTTATCAAGCATTATGCTCTTTCTCCACAATCTTTGCCCAAGGCCCATTTCGTTTTTAACCAAATTCAGCGACCCACATTGCTAGTTTGGAACCACATGATCCACGGTCTATCAAAGAGCGATCGACCTAATGATGCAATTCATTTCTATAATACCATGTATTACAAAGGAATACAGGGGAGTCATTTGACTTTCATATTTTTATTCAAGTCTTGTGCAAGAGTTTCTGATGTAAGGCAAGGCCAGATGGTTCGTGTTCATTCTATGAAACTTGGGTTTGAATCCTATCTTTTTGTTTCAAATGCCTTGATTCATATGTATGTGTGCTTTGGTGAGTTGGCCATGGCACAAAAGGTGTTCGATGGAATGTTGGAAAGAGATGTAGTTTCATGGAATTCTATAATTTGTGGATATTATCAATTTAATAGATTTAAGAAGGTCTTGGATCTTTTTAGGGAAATGCAGGCTATAAATGTGAGAGCTGATTCTGTGACAATGATGAAAGCTATCTCAGCAACCTGCTTTTTAAGTGAATGGGAAATGGGAGACTATTTGGTGAAGAAACACTTTGATAGATATGTATGGACGCCGTGGTATGATAGATTTTGCAGGTAG

Protein sequence

MQIPRSFCRLFSTFSKSQRAISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSPQSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKKHFDRYVWTPWYDRFCR*
Homology
BLAST of CsaV3_3G016720 vs. NCBI nr
Match: KAE8650448.1 (hypothetical protein Csa_010982 [Cucumis sativus])

HSP 1 Score: 524.6 bits (1350), Expect = 4.7e-145
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 0

Query: 1   MQIPRSFCRLFSTFSKSQRAISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSP 60
           MQIPRSFCRLFSTFSKSQRAISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSP
Sbjct: 1   MQIPRSFCRLFSTFSKSQRAISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSP 60

Query: 61  QSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLF 120
           QSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLF
Sbjct: 61  QSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLF 120

Query: 121 KSCARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVV 180
           KSCARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVV
Sbjct: 121 KSCARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVV 180

Query: 181 SWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKKH 240
           SWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKKH
Sbjct: 181 SWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKKH 240

Query: 241 FDRYVWTPWYDRFCR 256
           FDRYVWTPWYDRFCR
Sbjct: 241 FDRYVWTPWYDRFCR 255

BLAST of CsaV3_3G016720 vs. NCBI nr
Match: XP_011651133.1 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucumis sativus])

HSP 1 Score: 480.7 bits (1236), Expect = 7.8e-132
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0

Query: 1   MQIPRSFCRLFSTFSKSQRAISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSP 60
           MQIPRSFCRLFSTFSKSQRAISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSP
Sbjct: 1   MQIPRSFCRLFSTFSKSQRAISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSP 60

Query: 61  QSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLF 120
           QSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLF
Sbjct: 61  QSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLF 120

Query: 121 KSCARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVV 180
           KSCARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVV
Sbjct: 121 KSCARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVV 180

Query: 181 SWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVK 239
           SWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVK
Sbjct: 181 SWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVK 238

BLAST of CsaV3_3G016720 vs. NCBI nr
Match: KAA0033606.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 450.7 bits (1158), Expect = 8.6e-123
Identity = 223/238 (93.70%), Postives = 229/238 (96.22%), Query Frame = 0

Query: 1   MQIPRSFCRLFSTFSKSQRAISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSP 60
           M+IP SFCR FSTFS SQR IS STSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSP
Sbjct: 53  MKIPISFCRPFSTFSNSQRPISKSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSP 112

Query: 61  QSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLF 120
           QSLPKAH VFNQIQRPTLLVWNHMIHGLSKSDRPNDAI+FYNTMYYKGIQG+HLTFIFLF
Sbjct: 113 QSLPKAHLVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIYFYNTMYYKGIQGNHLTFIFLF 172

Query: 121 KSCARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVV 180
           KSCARVSDVRQGQMV +HSMKLGF SYLFVSNALIH YVCFGELAMAQKVFDGMLERDVV
Sbjct: 173 KSCARVSDVRQGQMVHLHSMKLGFGSYLFVSNALIHTYVCFGELAMAQKVFDGMLERDVV 232

Query: 181 SWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVK 239
           SWNSIICGYYQFNRFKKVLDLFREMQAINVRADS+TMMKAISA+CFLSEWEMGDYLVK
Sbjct: 233 SWNSIICGYYQFNRFKKVLDLFREMQAINVRADSLTMMKAISASCFLSEWEMGDYLVK 290

BLAST of CsaV3_3G016720 vs. NCBI nr
Match: XP_008439157.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Cucumis melo] >XP_008439158.1 PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Cucumis melo])

HSP 1 Score: 450.7 bits (1158), Expect = 8.6e-123
Identity = 223/238 (93.70%), Postives = 229/238 (96.22%), Query Frame = 0

Query: 1   MQIPRSFCRLFSTFSKSQRAISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSP 60
           M+IP SFCR FSTFS SQR IS STSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSP
Sbjct: 1   MKIPISFCRPFSTFSNSQRPISKSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSP 60

Query: 61  QSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLF 120
           QSLPKAH VFNQIQRPTLLVWNHMIHGLSKSDRPNDAI+FYNTMYYKGIQG+HLTFIFLF
Sbjct: 61  QSLPKAHLVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIYFYNTMYYKGIQGNHLTFIFLF 120

Query: 121 KSCARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVV 180
           KSCARVSDVRQGQMV +HSMKLGF SYLFVSNALIH YVCFGELAMAQKVFDGMLERDVV
Sbjct: 121 KSCARVSDVRQGQMVHLHSMKLGFGSYLFVSNALIHTYVCFGELAMAQKVFDGMLERDVV 180

Query: 181 SWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVK 239
           SWNSIICGYYQFNRFKKVLDLFREMQAINVRADS+TMMKAISA+CFLSEWEMGDYLVK
Sbjct: 181 SWNSIICGYYQFNRFKKVLDLFREMQAINVRADSLTMMKAISASCFLSEWEMGDYLVK 238

BLAST of CsaV3_3G016720 vs. NCBI nr
Match: KAG6576751.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 393.7 bits (1010), Expect = 1.2e-105
Identity = 197/241 (81.74%), Postives = 214/241 (88.80%), Query Frame = 0

Query: 1   MQIPRSFCRLFSTF---SKSQRAISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYA 60
           M+IPRS CRLFSTF   SKSQRA S S SL+SIKELHAQL+R QMH DPSSIS+VIKHYA
Sbjct: 19  MKIPRSVCRLFSTFTETSKSQRATSYSDSLSSIKELHAQLIRTQMHTDPSSISQVIKHYA 78

Query: 61  LSPQSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFI 120
           LSP  L KAHFVFNQIQ PTLLVWNHMIHGLSKS RPNDAIHFYN+MYY+GI GS+LTFI
Sbjct: 79  LSPPYLHKAHFVFNQIQGPTLLVWNHMIHGLSKSHRPNDAIHFYNSMYYQGINGSNLTFI 138

Query: 121 FLFKSCARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLER 180
           F+FK+CARVSDV QGQ V VH+MKLGFESYLFVSNALIHMY CFGELA+A+KVFDGM ER
Sbjct: 139 FVFKACARVSDVGQGQKVHVHAMKLGFESYLFVSNALIHMYGCFGELAIARKVFDGMPER 198

Query: 181 DVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLV 239
           DVVSWNS+ICGY QFNR+K+VLDLFREMQA+NV ADS+TMMK I A  FLSEWEM DYLV
Sbjct: 199 DVVSWNSLICGYCQFNRYKEVLDLFREMQAVNVSADSLTMMKVILACSFLSEWEMADYLV 258

BLAST of CsaV3_3G016720 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 7.3e-32
Identity = 85/246 (34.55%), Postives = 127/246 (51.63%), Query Frame = 0

Query: 21  ISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSP--QSLPKAHFVFNQIQRPTL 80
           + N  +L S++ +HAQ+++  +H    ++S++I+   LSP  + LP A  VF  IQ P L
Sbjct: 40  LHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNL 99

Query: 81  LVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVH 140
           L+WN M  G + S  P  A+  Y  M   G+  +  TF F+ KSCA+    ++GQ +  H
Sbjct: 100 LIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGH 159

Query: 141 SMKLGFESYLFVSNALIHMYVCFGELAMAQKVFD--------------------GMLE-- 200
            +KLG +  L+V  +LI MYV  G L  A KVFD                    G +E  
Sbjct: 160 VLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENA 219

Query: 201 ---------RDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFL 234
                    +DVVSWN++I GY +   +K+ L+LF++M   NVR D  TM+  +SA    
Sbjct: 220 QKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQS 279

BLAST of CsaV3_3G016720 vs. ExPASy Swiss-Prot
Match: Q9MA95 (Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E82 PE=3 SV=2)

HSP 1 Score: 133.7 bits (335), Expect = 3.1e-30
Identity = 68/205 (33.17%), Postives = 115/205 (56.10%), Query Frame = 0

Query: 21  ISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSPQ--SLPKAHFVFNQIQRPTL 80
           + N  SL  + +LH  ++++ +  +   +S +I      P+  +L  A  VF  I  P++
Sbjct: 13  LENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSV 72

Query: 81  LVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVH 140
            +WN MI G S S  P+ A+ FY  M  KG    + TF ++ K+C+ + D++ G  V   
Sbjct: 73  YIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGF 132

Query: 141 SMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKV 200
            +K GFE  ++VS  L+HMY+C GE+    +VF+ + + +VV+W S+I G+   NRF   
Sbjct: 133 VVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDA 192

Query: 201 LDLFREMQAINVRADSVTMMKAISA 224
           ++ FREMQ+  V+A+   M+  + A
Sbjct: 193 IEAFREMQSNGVKANETIMVDLLVA 217

BLAST of CsaV3_3G016720 vs. ExPASy Swiss-Prot
Match: Q9SJG6 (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E75 PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.9e-28
Identity = 80/270 (29.63%), Postives = 128/270 (47.41%), Query Frame = 0

Query: 25  TSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSPQSLPKAHFVFNQIQRPTLLVWNHM 84
           +++  +K++HA L++  +  D  + S V+     SP  +  A+ VF +I      VWN +
Sbjct: 36  STMRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVWNTI 95

Query: 85  IHGLSKSDRPNDAIHFYNTMYYK--GIQGSHLTFIFLFKSCARVSDVRQGQMVRVHSMKL 144
           I G S+S  P  AI  +  M      ++   LT+  +FK+  R+   R G+ +    +K 
Sbjct: 96  IRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKE 155

Query: 145 GFESYLFVSNALIHMYVCFGELA-------------------------------MAQKVF 204
           G E   F+ N ++HMYV  G L                                 AQ +F
Sbjct: 156 GLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLF 215

Query: 205 DGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWE 256
           D M +R+ VSWNS+I G+ +  RFK  LD+FREMQ  +V+ D  TM+  ++A  +L   E
Sbjct: 216 DEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASE 275

BLAST of CsaV3_3G016720 vs. ExPASy Swiss-Prot
Match: O82380 (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 7.8e-26
Identity = 76/215 (35.35%), Postives = 114/215 (53.02%), Query Frame = 0

Query: 21  ISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSP-QSLPKAHFVFNQIQRPTLL 80
           I    SL  +K+ H  ++R     DP S S++    ALS   SL  A  VF++I +P   
Sbjct: 37  IERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSF 96

Query: 81  VWNHMIHGLSKSDRPNDAI-HFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVH 140
            WN +I   +    P  +I  F + +       +  TF FL K+ A VS +  GQ +   
Sbjct: 97  AWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGM 156

Query: 141 SMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKV 200
           ++K    S +FV+N+LIH Y   G+L  A KVF  + E+DVVSWNS+I G+ Q     K 
Sbjct: 157 AVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKA 216

Query: 201 LDLFREMQAINVRADSVTMMKAISATCFLSEWEMG 234
           L+LF++M++ +V+A  VTM+  +SA   +   E G
Sbjct: 217 LELFKKMESEDVKASHVTMVGVLSACAKIRNLEFG 251

BLAST of CsaV3_3G016720 vs. ExPASy Swiss-Prot
Match: Q9LUJ2 (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H56 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.6e-24
Identity = 76/221 (34.39%), Postives = 120/221 (54.30%), Query Frame = 0

Query: 20  AISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYAL--SPQSLPKAHFVF-NQIQRP 79
           ++ N  +++ +K  H  L +  +  D S+I++++       + +SL  A  VF N     
Sbjct: 38  SLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYG 97

Query: 80  TLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVR 139
           T  ++N +I G + S   N+AI  +  M   GI     TF F   +CA+     +G  ++
Sbjct: 98  TCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAK--SRAKGNGIQ 157

Query: 140 VHSM--KLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNR 199
           +H +  K+G+   LFV N+L+H Y   GEL  A+KVFD M ER+VVSW S+ICGY + + 
Sbjct: 158 IHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDF 217

Query: 200 FKKVLDL-FREMQAINVRADSVTMMKAISATCFLSEWEMGD 235
            K  +DL FR ++   V  +SVTM+  ISA   L + E G+
Sbjct: 218 AKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGE 256

BLAST of CsaV3_3G016720 vs. ExPASy TrEMBL
Match: A0A0A0L8K2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180230 PE=4 SV=1)

HSP 1 Score: 480.7 bits (1236), Expect = 3.8e-132
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0

Query: 1   MQIPRSFCRLFSTFSKSQRAISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSP 60
           MQIPRSFCRLFSTFSKSQRAISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSP
Sbjct: 68  MQIPRSFCRLFSTFSKSQRAISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSP 127

Query: 61  QSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLF 120
           QSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLF
Sbjct: 128 QSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLF 187

Query: 121 KSCARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVV 180
           KSCARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVV
Sbjct: 188 KSCARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVV 247

Query: 181 SWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVK 239
           SWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVK
Sbjct: 248 SWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVK 305

BLAST of CsaV3_3G016720 vs. ExPASy TrEMBL
Match: A0A1S3AYR5 (pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103484038 PE=4 SV=1)

HSP 1 Score: 450.7 bits (1158), Expect = 4.2e-123
Identity = 223/238 (93.70%), Postives = 229/238 (96.22%), Query Frame = 0

Query: 1   MQIPRSFCRLFSTFSKSQRAISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSP 60
           M+IP SFCR FSTFS SQR IS STSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSP
Sbjct: 1   MKIPISFCRPFSTFSNSQRPISKSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSP 60

Query: 61  QSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLF 120
           QSLPKAH VFNQIQRPTLLVWNHMIHGLSKSDRPNDAI+FYNTMYYKGIQG+HLTFIFLF
Sbjct: 61  QSLPKAHLVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIYFYNTMYYKGIQGNHLTFIFLF 120

Query: 121 KSCARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVV 180
           KSCARVSDVRQGQMV +HSMKLGF SYLFVSNALIH YVCFGELAMAQKVFDGMLERDVV
Sbjct: 121 KSCARVSDVRQGQMVHLHSMKLGFGSYLFVSNALIHTYVCFGELAMAQKVFDGMLERDVV 180

Query: 181 SWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVK 239
           SWNSIICGYYQFNRFKKVLDLFREMQAINVRADS+TMMKAISA+CFLSEWEMGDYLVK
Sbjct: 181 SWNSIICGYYQFNRFKKVLDLFREMQAINVRADSLTMMKAISASCFLSEWEMGDYLVK 238

BLAST of CsaV3_3G016720 vs. ExPASy TrEMBL
Match: A0A5A7SUI2 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G00410 PE=4 SV=1)

HSP 1 Score: 450.7 bits (1158), Expect = 4.2e-123
Identity = 223/238 (93.70%), Postives = 229/238 (96.22%), Query Frame = 0

Query: 1   MQIPRSFCRLFSTFSKSQRAISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSP 60
           M+IP SFCR FSTFS SQR IS STSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSP
Sbjct: 53  MKIPISFCRPFSTFSNSQRPISKSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSP 112

Query: 61  QSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLF 120
           QSLPKAH VFNQIQRPTLLVWNHMIHGLSKSDRPNDAI+FYNTMYYKGIQG+HLTFIFLF
Sbjct: 113 QSLPKAHLVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIYFYNTMYYKGIQGNHLTFIFLF 172

Query: 121 KSCARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVV 180
           KSCARVSDVRQGQMV +HSMKLGF SYLFVSNALIH YVCFGELAMAQKVFDGMLERDVV
Sbjct: 173 KSCARVSDVRQGQMVHLHSMKLGFGSYLFVSNALIHTYVCFGELAMAQKVFDGMLERDVV 232

Query: 181 SWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVK 239
           SWNSIICGYYQFNRFKKVLDLFREMQAINVRADS+TMMKAISA+CFLSEWEMGDYLVK
Sbjct: 233 SWNSIICGYYQFNRFKKVLDLFREMQAINVRADSLTMMKAISASCFLSEWEMGDYLVK 290

BLAST of CsaV3_3G016720 vs. ExPASy TrEMBL
Match: A0A6J1E9A7 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111430570 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 6.0e-106
Identity = 197/241 (81.74%), Postives = 214/241 (88.80%), Query Frame = 0

Query: 1   MQIPRSFCRLFSTF---SKSQRAISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYA 60
           M+IPRS CRLFSTF   SKSQRA S S SL+SIKELHAQL+R QMH DPSSIS+VIKHYA
Sbjct: 1   MKIPRSVCRLFSTFTETSKSQRATSYSDSLSSIKELHAQLIRTQMHTDPSSISQVIKHYA 60

Query: 61  LSPQSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFI 120
           LSP  L KAHFVFNQIQ PTLLVWNHMIHGLSKS RPNDAIHFYN+MYY+GI GS+LTFI
Sbjct: 61  LSPPYLHKAHFVFNQIQGPTLLVWNHMIHGLSKSHRPNDAIHFYNSMYYQGINGSNLTFI 120

Query: 121 FLFKSCARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLER 180
           F+FK+CARVSDV QGQ V VH+MKLGFESYLFVSNALIHMY CFGELA+A+KVFDGM ER
Sbjct: 121 FVFKACARVSDVGQGQKVHVHAMKLGFESYLFVSNALIHMYGCFGELAIARKVFDGMPER 180

Query: 181 DVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLV 239
           DVVSWNS+ICGY QFNR+K+VLDLFREMQA+NV ADS+TMMK I A  FLSEWEM DYLV
Sbjct: 181 DVVSWNSLICGYCQFNRYKEVLDLFREMQAVNVSADSLTMMKVILACSFLSEWEMADYLV 240

BLAST of CsaV3_3G016720 vs. ExPASy TrEMBL
Match: A0A5D3DFA9 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold440G00270 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 5.7e-104
Identity = 187/197 (94.92%), Postives = 192/197 (97.46%), Query Frame = 0

Query: 42  MHIDPSSISEVIKHYALSPQSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFY 101
           MHIDPSSISEVIKHYALSPQSLPKAH VFNQIQRPTLLVWNHMIHGLSKSDRPNDAI+FY
Sbjct: 1   MHIDPSSISEVIKHYALSPQSLPKAHLVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIYFY 60

Query: 102 NTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCF 161
           NTMYYKGIQG+HLT IFLFKSCARVSDVRQGQMV +HSMKLGF SYLFVSNALIH YVCF
Sbjct: 61  NTMYYKGIQGNHLTLIFLFKSCARVSDVRQGQMVHLHSMKLGFGSYLFVSNALIHTYVCF 120

Query: 162 GELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAI 221
           GELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADS+TMMKAI
Sbjct: 121 GELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSLTMMKAI 180

Query: 222 SATCFLSEWEMGDYLVK 239
           SA+CFLSEWEMGDYLVK
Sbjct: 181 SASCFLSEWEMGDYLVK 197

BLAST of CsaV3_3G016720 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 139.0 bits (349), Expect = 5.2e-33
Identity = 85/246 (34.55%), Postives = 127/246 (51.63%), Query Frame = 0

Query: 21  ISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSP--QSLPKAHFVFNQIQRPTL 80
           + N  +L S++ +HAQ+++  +H    ++S++I+   LSP  + LP A  VF  IQ P L
Sbjct: 40  LHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNL 99

Query: 81  LVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVH 140
           L+WN M  G + S  P  A+  Y  M   G+  +  TF F+ KSCA+    ++GQ +  H
Sbjct: 100 LIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGH 159

Query: 141 SMKLGFESYLFVSNALIHMYVCFGELAMAQKVFD--------------------GMLE-- 200
            +KLG +  L+V  +LI MYV  G L  A KVFD                    G +E  
Sbjct: 160 VLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENA 219

Query: 201 ---------RDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFL 234
                    +DVVSWN++I GY +   +K+ L+LF++M   NVR D  TM+  +SA    
Sbjct: 220 QKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQS 279

BLAST of CsaV3_3G016720 vs. TAIR 10
Match: AT3G05240.1 (mitochondrial editing factor 19 )

HSP 1 Score: 133.7 bits (335), Expect = 2.2e-31
Identity = 68/205 (33.17%), Postives = 115/205 (56.10%), Query Frame = 0

Query: 21  ISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSPQ--SLPKAHFVFNQIQRPTL 80
           + N  SL  + +LH  ++++ +  +   +S +I      P+  +L  A  VF  I  P++
Sbjct: 13  LENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSV 72

Query: 81  LVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVH 140
            +WN MI G S S  P+ A+ FY  M  KG    + TF ++ K+C+ + D++ G  V   
Sbjct: 73  YIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGF 132

Query: 141 SMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKV 200
            +K GFE  ++VS  L+HMY+C GE+    +VF+ + + +VV+W S+I G+   NRF   
Sbjct: 133 VVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDA 192

Query: 201 LDLFREMQAINVRADSVTMMKAISA 224
           ++ FREMQ+  V+A+   M+  + A
Sbjct: 193 IEAFREMQSNGVKANETIMVDLLVA 217

BLAST of CsaV3_3G016720 vs. TAIR 10
Match: AT2G42920.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 126.3 bits (316), Expect = 3.5e-29
Identity = 80/270 (29.63%), Postives = 128/270 (47.41%), Query Frame = 0

Query: 25  TSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSPQSLPKAHFVFNQIQRPTLLVWNHM 84
           +++  +K++HA L++  +  D  + S V+     SP  +  A+ VF +I      VWN +
Sbjct: 36  STMRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVWNTI 95

Query: 85  IHGLSKSDRPNDAIHFYNTMYYK--GIQGSHLTFIFLFKSCARVSDVRQGQMVRVHSMKL 144
           I G S+S  P  AI  +  M      ++   LT+  +FK+  R+   R G+ +    +K 
Sbjct: 96  IRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKE 155

Query: 145 GFESYLFVSNALIHMYVCFGELA-------------------------------MAQKVF 204
           G E   F+ N ++HMYV  G L                                 AQ +F
Sbjct: 156 GLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLF 215

Query: 205 DGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWE 256
           D M +R+ VSWNS+I G+ +  RFK  LD+FREMQ  +V+ D  TM+  ++A  +L   E
Sbjct: 216 DEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASE 275

BLAST of CsaV3_3G016720 vs. TAIR 10
Match: AT2G29760.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 119.0 bits (297), Expect = 5.5e-27
Identity = 76/215 (35.35%), Postives = 114/215 (53.02%), Query Frame = 0

Query: 21  ISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSP-QSLPKAHFVFNQIQRPTLL 80
           I    SL  +K+ H  ++R     DP S S++    ALS   SL  A  VF++I +P   
Sbjct: 37  IERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSF 96

Query: 81  VWNHMIHGLSKSDRPNDAI-HFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVH 140
            WN +I   +    P  +I  F + +       +  TF FL K+ A VS +  GQ +   
Sbjct: 97  AWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGM 156

Query: 141 SMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKV 200
           ++K    S +FV+N+LIH Y   G+L  A KVF  + E+DVVSWNS+I G+ Q     K 
Sbjct: 157 AVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKA 216

Query: 201 LDLFREMQAINVRADSVTMMKAISATCFLSEWEMG 234
           L+LF++M++ +V+A  VTM+  +SA   +   E G
Sbjct: 217 LELFKKMESEDVKASHVTMVGVLSACAKIRNLEFG 251

BLAST of CsaV3_3G016720 vs. TAIR 10
Match: AT3G22690.1 (CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 49784 Blast hits to 14716 proteins in 280 species: Archae - 2; Bacteria - 10; Metazoa - 107; Fungi - 167; Plants - 48594; Viruses - 0; Other Eukaryotes - 904 (source: NCBI BLink). )

HSP 1 Score: 112.8 bits (281), Expect = 4.0e-25
Identity = 76/221 (34.39%), Postives = 120/221 (54.30%), Query Frame = 0

Query: 20  AISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYAL--SPQSLPKAHFVF-NQIQRP 79
           ++ N  +++ +K  H  L +  +  D S+I++++       + +SL  A  VF N     
Sbjct: 38  SLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYG 97

Query: 80  TLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVR 139
           T  ++N +I G + S   N+AI  +  M   GI     TF F   +CA+     +G  ++
Sbjct: 98  TCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAK--SRAKGNGIQ 157

Query: 140 VHSM--KLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNR 199
           +H +  K+G+   LFV N+L+H Y   GEL  A+KVFD M ER+VVSW S+ICGY + + 
Sbjct: 158 IHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDF 217

Query: 200 FKKVLDL-FREMQAINVRADSVTMMKAISATCFLSEWEMGD 235
            K  +DL FR ++   V  +SVTM+  ISA   L + E G+
Sbjct: 218 AKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGE 256

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8650448.14.7e-145100.00hypothetical protein Csa_010982 [Cucumis sativus][more]
XP_011651133.17.8e-132100.00pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucumis sa... [more]
KAA0033606.18.6e-12393.70pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa][more]
XP_008439157.18.6e-12393.70PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-... [more]
KAG6576751.11.2e-10581.74Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
Match NameE-valueIdentityDescription
Q9LN017.3e-3234.55Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop... [more]
Q9MA953.1e-3033.17Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis th... [more]
Q9SJG64.9e-2829.63Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidop... [more]
O823807.8e-2635.35Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop... [more]
Q9LUJ25.6e-2434.39Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
A0A0A0L8K23.8e-132100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180230 PE=4 SV=1[more]
A0A1S3AYR54.2e-12393.70pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like OS=Cuc... [more]
A0A5A7SUI24.2e-12393.70Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A6J1E9A76.0e-10681.74pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like OS=Cuc... [more]
A0A5D3DFA95.7e-10494.92Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
Match NameE-valueIdentityDescription
AT1G08070.15.2e-3334.55Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G05240.12.2e-3133.17mitochondrial editing factor 19 [more]
AT2G42920.13.5e-2929.63Pentatricopeptide repeat (PPR-like) superfamily protein [more]
AT2G29760.15.5e-2735.35Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G22690.14.0e-2534.39CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 12..140
e-value: 1.7E-11
score: 46.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 141..249
e-value: 1.1E-15
score: 59.8
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 80..104
e-value: 7.2E-4
score: 17.6
coord: 180..206
e-value: 1.5E-5
score: 22.8
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 78..125
e-value: 1.2E-8
score: 35.0
coord: 177..221
e-value: 1.9E-8
score: 34.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 77..111
score: 8.944478
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 178..212
score: 10.588674
NoneNo IPR availablePANTHERPTHR47924PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 20..235
NoneNo IPR availablePANTHERPTHR47924:SF46PENTATRICOPEPTIDE REPEAT PROTEIN-RELATEDcoord: 20..235

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G016720.1CsaV3_3G016720.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding