CsaV3_3G015510 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G015510
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Pre-mRNA-processing factor 6
Location	chr3: 11570035 .. 11570418 (-)
RNA-Seq Expression	CsaV3_3G015510
Synteny	CsaV3_3G015510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAGGCACTGCAAGTATGTCCAAATAGTGGCATATTGCGGGAAGCCTGAATAGAGATGGTACCTTGCCCATGATGTAAAACCAAGACCATTGTTGCACTTAACAAATGTGATCATGATACTCACCTTATTGCTGCTGTGGCCAAGTTGTTTTGGCATTACAGGAAGGTTGACATTGCTAGAACTTGGCTGAACAGGGCAGTAATTCTTGCTTCAGGTGTTGGTGTTTTTACTACAAATTCAAACTTCAGCAGGGTACTGACGAGAATCAGAAGAAACGTACTGAAGAGATATGTTGATGCAGAACCCAAACAGTTGCGAAATGGCAAACAATTTCAAAGGCTGAGGAGAACTTCCATCAAACGACTGAAGCAATCTTGA

mRNA sequence

ATGGCCAAGGCACTGCAAACCATTGTTGCACTTAACAAATGTGATCATGATACTCACCTTATTGCTGCTGTGGCCAAGTTGTTTTGGCATTACAGGAAGGTTGACATTGCTAGAACTTGGCTGAACAGGGCAGTAATTCTTGCTTCAGGTGTTGGTGTTTTTACTACAAATTCAAACTTCAGCAGGGTACTGACGAGAATCAGAAGAAACGTACTGAAGAGATATGTTGATGCAGAACCCAAACAGTTGCGAAATGGCAAACAATTTCAAAGGCTGAGGAGAACTTCCATCAAACGACTGAAGCAATCTTGA

Coding sequence (CDS)

ATGGCCAAGGCACTGCAAACCATTGTTGCACTTAACAAATGTGATCATGATACTCACCTTATTGCTGCTGTGGCCAAGTTGTTTTGGCATTACAGGAAGGTTGACATTGCTAGAACTTGGCTGAACAGGGCAGTAATTCTTGCTTCAGGTGTTGGTGTTTTTACTACAAATTCAAACTTCAGCAGGGTACTGACGAGAATCAGAAGAAACGTACTGAAGAGATATGTTGATGCAGAACCCAAACAGTTGCGAAATGGCAAACAATTTCAAAGGCTGAGGAGAACTTCCATCAAACGACTGAAGCAATCTTGA

Protein sequence

MAKALQTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTTNSNFSRVLTRIRRNVLKRYVDAEPKQLRNGKQFQRLRRTSIKRLKQS*

Homology

[Close]

BLAST of CsaV3_3G015510 vs. NCBI nr
Match: KGN57203.1 (hypothetical protein Csa_010859 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 2.8e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MAKALQTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTTNSNF 60
           MAKALQTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTTNSNF
Sbjct: 1   MAKALQTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTTNSNF 60

Query: 61  SRVLTRIRRNVLKRYVDAEPKQLRNGKQFQRLRRTSIKRLKQS 104
           SRVLTRIRRNVLKRYVDAEPKQLRNGKQFQRLRRTSIKRLKQS
Sbjct: 61  SRVLTRIRRNVLKRYVDAEPKQLRNGKQFQRLRRTSIKRLKQS 103

[Close]

BLAST of CsaV3_3G015510 vs. NCBI nr
Match: KAF3953515.1 (hypothetical protein CMV_021055 [Castanea mollissima])

HSP 1 Score: 82.8 bits (203), Expect = 1.9e-12
Identity = 46/88 (52.27%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 10   ALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSRVLTR 69
            AL KCDHD H+IAAVAKLFWH RKVD ARTWLNRAV LA  +G F               
Sbjct: 918  ALKKCDHDPHVIAAVAKLFWHDRKVDKARTWLNRAVTLAPDIGDFWALYYKFELQHGSEE 977

Query: 70   IRRNVLKRYVDAEPKQLRNGKQFQRLRR 95
            I+++VLKR + AEPK   +G+++Q + +
Sbjct: 978  IQKDVLKRCIAAEPK---HGEKWQAISK 1002

[Close]

BLAST of CsaV3_3G015510 vs. NCBI nr
Match: PON43669.1 (N-terminal acetyltransferase A, auxiliary subunit [Parasponia andersonii])

HSP 1 Score: 81.6 bits (200), Expect = 4.3e-12
Identity = 46/88 (52.27%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 10  ALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSRVLTR 69
           AL KCDHD H+IAAVAKLFWH RKVD ARTWLNRAV LA  +G F               
Sbjct: 907 ALKKCDHDPHVIAAVAKLFWHDRKVDKARTWLNRAVTLAPDIGDFWALYYKFELQHGSEE 966

Query: 70  IRRNVLKRYVDAEPKQLRNGKQFQRLRR 95
            +++VLKR V+AEPK   +G+++Q + +
Sbjct: 967 NQKDVLKRCVNAEPK---HGEKWQAISK 991

[Close]

BLAST of CsaV3_3G015510 vs. NCBI nr
Match: XP_002517947.1 (protein STABILIZED1 [Ricinus communis] >EEF44465.1 pre-mRNA splicing factor, putative [Ricinus communis])

HSP 1 Score: 81.6 bits (200), Expect = 4.3e-12
Identity = 46/88 (52.27%), Postives = 57/88 (64.77%), Query Frame = 0


Query: 10  ALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSRVLTR 69
           AL KCDHD H+IAAVAKLFWH RKVD ARTWLNRAV LA  +G F               
Sbjct: 915 ALKKCDHDPHVIAAVAKLFWHDRKVDKARTWLNRAVTLAPDIGDFWALYYKFELQHGTEE 974

Query: 70  IRRNVLKRYVDAEPKQLRNGKQFQRLRR 95
            +R+VLKR + AEPK   +G+++Q + +
Sbjct: 975 NQRDVLKRCIAAEPK---HGEKWQAISK 999

[Close]

BLAST of CsaV3_3G015510 vs. NCBI nr
Match: XP_038907061.1 (protein STABILIZED1 [Benincasa hispida])

HSP 1 Score: 81.6 bits (200), Expect = 4.3e-12
Identity = 46/88 (52.27%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 10  ALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSRVLTR 69
           AL KCDHD H+IAAVAKLFWH RKVD ARTWLNRAV LA  VG F            +  
Sbjct: 907 ALKKCDHDPHVIAAVAKLFWHDRKVDKARTWLNRAVTLAPDVGDFWALYYKFELQHGVDE 966

Query: 70  IRRNVLKRYVDAEPKQLRNGKQFQRLRR 95
            +++VLKR + AEPK   +G+++Q + +
Sbjct: 967 NQKDVLKRCIAAEPK---HGEKWQTISK 991

[Close]

BLAST of CsaV3_3G015510 vs. ExPASy Swiss-Prot
Match: Q2KJJ0 (Pre-mRNA-processing factor 6 OS=Bos taurus OX=9913 GN=PRPF6 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.5e-07
Identity = 30/79 (37.97%), Postives = 43/79 (54.43%), Query Frame = 0


Query: 6   QTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVG---VFTTNSNFSR 65
           +++ AL KC+HD H++ AVAKLFW  RK+  AR W +R V + S +G    F        
Sbjct: 829 KSVDALKKCEHDPHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQH 888

Query: 66  VLTRIRRNVLKRYVDAEPK 82
                R  V +R  +AEP+
Sbjct: 889 GTEEQREEVRRRCENAEPR 907

[Close]

BLAST of CsaV3_3G015510 vs. ExPASy Swiss-Prot
Match: O94906 (Pre-mRNA-processing factor 6 OS=Homo sapiens OX=9606 GN=PRPF6 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.3e-07
Identity = 30/79 (37.97%), Postives = 42/79 (53.16%), Query Frame = 0


Query: 6   QTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVG---VFTTNSNFSR 65
           +++ AL KC+HD H++ AVAKLFW  RK+  AR W +R V + S +G    F        
Sbjct: 829 KSVDALKKCEHDPHVLLAVAKLFWSQRKITKAREWFHRTVKIDSDLGDAWAFFYKFELQH 888

Query: 66  VLTRIRRNVLKRYVDAEPK 82
                +  V KR   AEP+
Sbjct: 889 GTEEQQEEVRKRCESAEPR 907

[Close]

BLAST of CsaV3_3G015510 vs. ExPASy Swiss-Prot
Match: Q91YR7 (Pre-mRNA-processing factor 6 OS=Mus musculus OX=10090 GN=Prpf6 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.3e-07
Identity = 30/79 (37.97%), Postives = 43/79 (54.43%), Query Frame = 0


Query: 6   QTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVG---VFTTNSNFSR 65
           +++ AL KC+HD H++ AVAKLFW  RK+  AR W +R V + S +G    F        
Sbjct: 829 KSVDALKKCEHDPHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQH 888

Query: 66  VLTRIRRNVLKRYVDAEPK 82
                +  V KR  +AEP+
Sbjct: 889 GTEEQQEEVRKRCENAEPR 907

[Close]

BLAST of CsaV3_3G015510 vs. ExPASy Swiss-Prot
Match: Q5RCC2 (Pre-mRNA-processing factor 6 OS=Pongo abelii OX=9601 GN=PRPF6 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.3e-07
Identity = 30/79 (37.97%), Postives = 42/79 (53.16%), Query Frame = 0


Query: 6   QTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVG---VFTTNSNFSR 65
           +++ AL KC+HD H++ AVAKLFW  RK+  AR W +R V + S +G    F        
Sbjct: 829 KSVDALKKCEHDPHVLLAVAKLFWSQRKITKAREWFHRTVKIDSDLGDAWAFFYKFELQH 888

Query: 66  VLTRIRRNVLKRYVDAEPK 82
                +  V KR   AEP+
Sbjct: 889 GTEERQEEVRKRCESAEPR 907

[Close]

BLAST of CsaV3_3G015510 vs. ExPASy Swiss-Prot
Match: A1A5S1 (Pre-mRNA-processing factor 6 OS=Rattus norvegicus OX=10116 GN=Prpf6 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.3e-07
Identity = 30/79 (37.97%), Postives = 43/79 (54.43%), Query Frame = 0


Query: 6   QTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVG---VFTTNSNFSR 65
           +++ AL KC+HD H++ AVAKLFW  RK+  AR W +R V + S +G    F        
Sbjct: 829 KSVDALKKCEHDPHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQH 888

Query: 66  VLTRIRRNVLKRYVDAEPK 82
                +  V KR  +AEP+
Sbjct: 889 GTEEQQEEVRKRCENAEPR 907

[Close]

BLAST of CsaV3_3G015510 vs. ExPASy TrEMBL
Match: A0A0A0L5Z8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171110 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.4e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MAKALQTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTTNSNF 60
           MAKALQTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTTNSNF
Sbjct: 1   MAKALQTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTTNSNF 60

Query: 61  SRVLTRIRRNVLKRYVDAEPKQLRNGKQFQRLRRTSIKRLKQS 104
           SRVLTRIRRNVLKRYVDAEPKQLRNGKQFQRLRRTSIKRLKQS
Sbjct: 61  SRVLTRIRRNVLKRYVDAEPKQLRNGKQFQRLRRTSIKRLKQS 103

[Close]

BLAST of CsaV3_3G015510 vs. ExPASy TrEMBL
Match: A0A2P5B4G7 (N-terminal acetyltransferase A, auxiliary subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x14_272050 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.1e-12
Identity = 46/88 (52.27%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 10  ALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSRVLTR 69
           AL KCDHD H+IAAVAKLFWH RKVD ARTWLNRAV LA  +G F               
Sbjct: 907 ALKKCDHDPHVIAAVAKLFWHDRKVDKARTWLNRAVTLAPDIGDFWALYYKFELQHGSEE 966

Query: 70  IRRNVLKRYVDAEPKQLRNGKQFQRLRR 95
            +++VLKR V+AEPK   +G+++Q + +
Sbjct: 967 NQKDVLKRCVNAEPK---HGEKWQAISK 991

[Close]

BLAST of CsaV3_3G015510 vs. ExPASy TrEMBL
Match: B9RW28 (Pre-mRNA splicing factor, putative OS=Ricinus communis OX=3988 GN=RCOM_1175540 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.1e-12
Identity = 46/88 (52.27%), Postives = 57/88 (64.77%), Query Frame = 0


Query: 10  ALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSRVLTR 69
           AL KCDHD H+IAAVAKLFWH RKVD ARTWLNRAV LA  +G F               
Sbjct: 915 ALKKCDHDPHVIAAVAKLFWHDRKVDKARTWLNRAVTLAPDIGDFWALYYKFELQHGTEE 974

Query: 70  IRRNVLKRYVDAEPKQLRNGKQFQRLRR 95
            +R+VLKR + AEPK   +G+++Q + +
Sbjct: 975 NQRDVLKRCIAAEPK---HGEKWQAISK 999

[Close]

BLAST of CsaV3_3G015510 vs. ExPASy TrEMBL
Match: A0A445DPL4 (Ubiquitin-like domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A03g011105 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.7e-12
Identity = 46/88 (52.27%), Postives = 57/88 (64.77%), Query Frame = 0


Query: 10   ALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSRVLTR 69
            AL KCDHD H+IAAVAKLFWH RKVD ARTWLNRAV LA  +G F               
Sbjct: 921  ALKKCDHDPHVIAAVAKLFWHDRKVDKARTWLNRAVTLAPDIGDFWALCYKFELQHGTED 980

Query: 70   IRRNVLKRYVDAEPKQLRNGKQFQRLRR 95
             +++VLKR V AEPK   +G+++Q + +
Sbjct: 981  SQKDVLKRCVSAEPK---HGEKWQAISK 1005

[Close]

BLAST of CsaV3_3G015510 vs. ExPASy TrEMBL
Match: A0A5A7UD74 (Protein STABILIZED1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1769G00250 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.7e-12
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 6  QTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASG 51
          ++I AL K DHDTHL+AAVAK FWHYRKVDIARTWLNRAVILASG
Sbjct: 10 KSIDALQKYDHDTHLVAAVAKWFWHYRKVDIARTWLNRAVILASG 54

[Close]

BLAST of CsaV3_3G015510 vs. TAIR 10
Match: AT4G03430.1 (pre-mRNA splicing factor-related )

HSP 1 Score: 54.3 bits (129), Expect = 6.8e-08
Identity = 32/92 (34.78%), Postives = 49/92 (53.26%), Query Frame = 0


Query: 6    QTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSR 65
            ++I A+ KCD D H+  AVAKLFW  +KV+ AR W  RAV +   +G F           
Sbjct: 914  KSIDAMKKCDRDPHVTIAVAKLFWQDKKVEKARAWFERAVTVGPDIGDFWALFYKFELQH 973

Query: 66   VLTRIRRNVLKRYVDAEPKQLRNGKQFQRLRR 95
                 R+ V+ + V  EPK   +G+++Q + +
Sbjct: 974  GSDEDRKEVVAKCVACEPK---HGEKWQAISK 1002

The following BLAST results are available for this feature:

BLAST of CsaV3_3G015510 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57203.1	2.8e-48	100.00	hypothetical protein Csa_010859 [Cucumis sativus]	[more]
KAF3953515.1	1.9e-12	52.27	hypothetical protein CMV_021055 [Castanea mollissima]	[more]
PON43669.1	4.3e-12	52.27	N-terminal acetyltransferase A, auxiliary subunit [Parasponia andersonii]	[more]
XP_002517947.1	4.3e-12	52.27	protein STABILIZED1 [Ricinus communis] >EEF44465.1 pre-mRNA splicing factor, put...	[more]
XP_038907061.1	4.3e-12	52.27	protein STABILIZED1 [Benincasa hispida]	[more]

BLAST of CsaV3_3G015510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2KJJ0	2.5e-07	37.97	Pre-mRNA-processing factor 6 OS=Bos taurus OX=9913 GN=PRPF6 PE=2 SV=1	[more]
O94906	3.3e-07	37.97	Pre-mRNA-processing factor 6 OS=Homo sapiens OX=9606 GN=PRPF6 PE=1 SV=1	[more]
Q91YR7	3.3e-07	37.97	Pre-mRNA-processing factor 6 OS=Mus musculus OX=10090 GN=Prpf6 PE=1 SV=1	[more]
Q5RCC2	3.3e-07	37.97	Pre-mRNA-processing factor 6 OS=Pongo abelii OX=9601 GN=PRPF6 PE=2 SV=1	[more]
A1A5S1	3.3e-07	37.97	Pre-mRNA-processing factor 6 OS=Rattus norvegicus OX=10116 GN=Prpf6 PE=1 SV=1	[more]

BLAST of CsaV3_3G015510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5Z8	1.4e-48	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171110 PE=4 SV=1	[more]
A0A2P5B4G7	2.1e-12	52.27	N-terminal acetyltransferase A, auxiliary subunit OS=Parasponia andersonii OX=34...	[more]
B9RW28	2.1e-12	52.27	Pre-mRNA splicing factor, putative OS=Ricinus communis OX=3988 GN=RCOM_1175540 P...	[more]
A0A445DPL4	2.7e-12	52.27	Ubiquitin-like domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A03g...	[more]
A0A5A7UD74	2.7e-12	84.44	Protein STABILIZED1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1769...	[more]

BLAST of CsaV3_3G015510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G03430.1	6.8e-08	34.78	pre-mRNA splicing factor-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027108	Pre-mRNA-processing factor 6/Prp1/STA1	PANTHER	PTHR11246:SF1	PRE-MRNA-PROCESSING FACTOR 6	coord: 8..94
IPR045075	Pre-mRNA-splicing factor Syf1-like	PANTHER	PTHR11246	PRE-MRNA SPLICING FACTOR	coord: 8..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G015510.1	CsaV3_3G015510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome