CsaV3_3G014620 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G014620
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	translocator protein homolog
Location	chr3: 10900295 .. 10901555 (+)
RNA-Seq Expression	CsaV3_3G014620
Synteny	CsaV3_3G014620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTCTTCCAATCCTCCGTTCAAATCCCGACCAGAATCCAAATACACCAAGGCCAAGAGAGCTCTCCGTTCTCTCGCCGTCTCCGTCGCCATTCCTGTTTCCCTCACAATCGCCGCCATCTTCCTCTTTGGCCGCTCCTCTCGCCATTACCCCAACCGTAACCGCCCGATTTGGATAGGCCCACTCTGGCTCATCCAGCTTTCCTCCATTGGCTCCTCCTTTCTGGTTGGCCTCGCAGCTTGGCTCGTTTGGGCGGACGGTGGTTTCCATGGCGGTTCCAATGCTCTTCCGCTCTACATCGCGCACCTTTCTCTCAGCGTCGTTTGGAATCCTCTGGTGCTTGTGATTCGGTCTGTGGTGATTGCGTTTTTGTTCTGTGTTTTGGATTGTGTGACCCTGTTTGCGTGTTATCTGGCGTTCAAGCGAGTTAATCCTTTCGCTAAGGATCTGATGAAGCCTTGTTTGGCTTGGACTGCGTATCTCTCTGCTGTTACGTATGTGTTCATTGATCTTTGATTGAGGTTTTTGATCATTTGGTGATTTTTGAAAAGATTTGTTTATCACATTGTTTTTTTTTTTTTTTTACTAGGACGTTGTAGAACTTTTTATCACAGTACAAAGAAATTGTTAGGAGATGATTGAAAGGAAAGTTTGTAGAATTAGTGGTATAATTATTTCGGTTCATGCGTTCTTGATCGAACCGTAGGAGATTTTTATGATGAATTTCTTGTTTCTTATTTGACAGCGATCTCGATTTCATGTTTACTTTTTACTTCATAGTCTATTTTATACATACGTTTTGTTCAGTTTTAATGCGTATATTTTGAACGTCCAATCAAAATTGGCTAAATAATTGTAATAATCAACTGATGAAGGGATTAAATCAAGATTTATTGAAAAACACATCACCCTTTGTAGTAATCTAATGATTTGAAGATAATTTGAGTTAAGAAGATCGTTTTTTTTTAAAGTAAAAAATAAAACTAACTTATTTTTTTATCTAACAAATATTTTTTTAAAAAATGTTTATAGGAAGATCACTCTCAACAATATTTCATGAAAAATATTATCATCAAACTTCCAAACAATATTTCATTAAAAATATATTAATCTTTATTTATTATTCCTTTAATTTATGCAAATTTTAAATCCAATATTTACATTACAAAAAAATGATCACGTGGAAACTGTCGTTTCCTTATTACTATGTCAATGTTATTGGAGCATGAAATGTTGTTTATTATACAGTGTCAGATAA

mRNA sequence

ATGCCTTCTTCCAATCCTCCGTTCAAATCCCGACCAGAATCCAAATACACCAAGGCCAAGAGAGCTCTCCGTTCTCTCGCCGTCTCCGTCGCCATTCCTGTTTCCCTCACAATCGCCGCCATCTTCCTCTTTGGCCGCTCCTCTCGCCATTACCCCAACCGTAACCGCCCGATTTGGATAGGCCCACTCTGGCTCATCCAGCTTTCCTCCATTGGCTCCTCCTTTCTGGTTGGCCTCGCAGCTTGGCTCGTTTGGGCGGACGGTGGTTTCCATGGCGGTTCCAATGCTCTTCCGCTCTACATCGCGCACCTTTCTCTCAGCGTCGTTTGGAATCCTCTGGTGCTTGTGATTCGGTCTGTGGTGATTGCGTTTTTGTTCTGTGTTTTGGATTGTGTGACCCTGTTTGCGTGTTATCTGGCGTTCAAGCGAGTTAATCCTTTCGCTAAGGATCTGATGAAGCCTTGTTTGGCTTGGACTGCGTATCTCTCTGCTGTTACTGTCAGATAA

Coding sequence (CDS)

ATGCCTTCTTCCAATCCTCCGTTCAAATCCCGACCAGAATCCAAATACACCAAGGCCAAGAGAGCTCTCCGTTCTCTCGCCGTCTCCGTCGCCATTCCTGTTTCCCTCACAATCGCCGCCATCTTCCTCTTTGGCCGCTCCTCTCGCCATTACCCCAACCGTAACCGCCCGATTTGGATAGGCCCACTCTGGCTCATCCAGCTTTCCTCCATTGGCTCCTCCTTTCTGGTTGGCCTCGCAGCTTGGCTCGTTTGGGCGGACGGTGGTTTCCATGGCGGTTCCAATGCTCTTCCGCTCTACATCGCGCACCTTTCTCTCAGCGTCGTTTGGAATCCTCTGGTGCTTGTGATTCGGTCTGTGGTGATTGCGTTTTTGTTCTGTGTTTTGGATTGTGTGACCCTGTTTGCGTGTTATCTGGCGTTCAAGCGAGTTAATCCTTTCGCTAAGGATCTGATGAAGCCTTGTTTGGCTTGGACTGCGTATCTCTCTGCTGTTACTGTCAGATAA

Protein sequence

MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTVR*

Homology

[Close]

BLAST of CsaV3_3G014620 vs. NCBI nr
Match: KGN57143.2 (hypothetical protein Csa_010693 [Cucumis sativus])

HSP 1 Score: 334.0 bits (855), Expect = 7.8e-88
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI 60
           MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI
Sbjct: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI 60

Query: 61  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 120
           GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV
Sbjct: 61  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 120

Query: 121 VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTVR 169
           VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTVR
Sbjct: 121 VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTVR 168

[Close]

BLAST of CsaV3_3G014620 vs. NCBI nr
Match: XP_004134488.1 (translocator protein homolog [Cucumis sativus])

HSP 1 Score: 330.5 bits (846), Expect = 8.6e-87
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI 60
           MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI
Sbjct: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI 60

Query: 61  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 120
           GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV
Sbjct: 61  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 120

Query: 121 VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVT 167
           VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVT
Sbjct: 121 VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVT 166

[Close]

BLAST of CsaV3_3G014620 vs. NCBI nr
Match: XP_016898980.1 (PREDICTED: translocator protein homolog [Cucumis melo] >KAA0049494.1 translocator protein-like protein [Cucumis melo var. makuwa] >TYK16173.1 translocator protein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 316.6 bits (810), Expect = 1.3e-82
Identity = 159/166 (95.78%), Postives = 163/166 (98.19%), Query Frame = 0


Query: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI 60
           MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIA IFLFGRSSRH+PNRNRPIWI
Sbjct: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAVIFLFGRSSRHFPNRNRPIWI 60

Query: 61  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 120
           GPLWL+QLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVW+PLVLVIRSV
Sbjct: 61  GPLWLLQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWSPLVLVIRSV 120

Query: 121 VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVT 167
           VIAFLFCVLD VTLFACY AF+RVNPFAKDLMKPCLAWTAYLSAVT
Sbjct: 121 VIAFLFCVLDFVTLFACYRAFERVNPFAKDLMKPCLAWTAYLSAVT 166

[Close]

BLAST of CsaV3_3G014620 vs. NCBI nr
Match: XP_038878873.1 (translocator protein homolog [Benincasa hispida])

HSP 1 Score: 308.5 bits (789), Expect = 3.5e-80
Identity = 153/166 (92.17%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI 60
           M SSNPPFKSRPESKYTKAKRALRSLAVSVAIP+SLTIA IFLFGRS+RH+PNRNRPIWI
Sbjct: 1   MSSSNPPFKSRPESKYTKAKRALRSLAVSVAIPLSLTIAVIFLFGRSARHFPNRNRPIWI 60

Query: 61  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 120
           GPLWL+ LSSIGSSFL+GLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV
Sbjct: 61  GPLWLLHLSSIGSSFLIGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 120

Query: 121 VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVT 167
           V+AFLFCVLD VTLFACY  FKRVNPFAKDL+KPCLAWTAYLSAVT
Sbjct: 121 VLAFLFCVLDFVTLFACYRTFKRVNPFAKDLIKPCLAWTAYLSAVT 166

[Close]

BLAST of CsaV3_3G014620 vs. NCBI nr
Match: XP_023540366.1 (translocator protein homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 290.8 bits (743), Expect = 7.5e-75
Identity = 142/164 (86.59%), Postives = 155/164 (94.51%), Query Frame = 0


Query: 3   SSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGP 62
           SS+PPFKSRPESKYTKAKRALRSLAVSVAIP++LTIA IFLFGRSSRH+PNRNRPIW+ P
Sbjct: 57  SSSPPFKSRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVAP 116

Query: 63  LWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVI 122
           LWL+ LSSI SSFL+GLAAWLVWADGGFH GSNALPLYIAHLSLSVVWNPLVLVIR++++
Sbjct: 117 LWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRALLL 176

Query: 123 AFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVT 167
           AFLFCVLD VTL+ACY  FKRVNPFAKDL+KPCLAWTAYL AVT
Sbjct: 177 AFLFCVLDLVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVT 220

[Close]

BLAST of CsaV3_3G014620 vs. ExPASy Swiss-Prot
Match: O82245 (Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 5.3e-31
Identity = 70/160 (43.75%), Postives = 96/160 (60.00%), Query Frame = 0


Query: 9   KSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQL 68
           K + + K   AKR L+SL V+VA PV +T+ A +  G S  +        WI PLWL+  
Sbjct: 33  KGKRDQKRAMAKRGLKSLTVAVAAPVLVTLFATYFLGTSDGYGNRAKSSSWIPPLWLLHT 92

Query: 69  SSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCV 128
           + + SS L+GLAAWLVW DGGFH   NAL LY+A   L +VW+P+   + S V      +
Sbjct: 93  TCLASSGLMGLAAWLVWVDGGFHKKPNALYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWL 152

Query: 129 LDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTVR 169
                LF CY AF  ++P A +L+KPCLAW A+++AV V+
Sbjct: 153 GQSAALFGCYKAFNEISPVAGNLVKPCLAWAAFVAAVNVK 192

[Close]

BLAST of CsaV3_3G014620 vs. ExPASy Swiss-Prot
Match: Q9GMC9 (Translocator protein OS=Ovis aries OX=9940 GN=TSPO PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.2e-05
Identity = 37/129 (28.68%), Postives = 63/129 (48.84%), Query Frame = 0


Query: 42  FLFGRSSRHYPNRNRPIWIGPLWLIQLSSIGSSFLVGLAAWLVWAD-GGFHGGSNA-LPL 101
           ++ G   R Y +  +P W  P W++          +G  ++L+W + GGF   +   L L
Sbjct: 25  YIRGEGFRWYASLQKPPWHPPRWILAPIWGTLYSAMGYGSYLIWKELGGFSKEAVVPLGL 84

Query: 102 YIAHLSLSVVWNPLVLVIRSVVIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWT 161
           Y   L+L+  W PL    R +  AF+  +L      A  +A+++V+P A  L+ P LAW 
Sbjct: 85  YAGQLALNWAWPPLFFGARQMGWAFVDLLLTGGMAAATAMAWRQVSPPAACLLYPYLAWL 144

Query: 162 AYLSAVTVR 169
           A+ + +  R
Sbjct: 145 AFAAMLNYR 153

[Close]

BLAST of CsaV3_3G014620 vs. ExPASy Swiss-Prot
Match: E2RDM9 (Translocator protein 2 OS=Canis lupus familiaris OX=9615 GN=TSPO2 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.2e-04
Identity = 40/143 (27.97%), Postives = 68/143 (47.55%), Query Frame = 0


Query: 27  AVSVAIP-VSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQLSSIGSSFLVGLAAWLVW 86
           A+ VA+P +   + ++    R  R Y    +P W  P  ++    I   F++G A++LVW
Sbjct: 6   AIFVALPHLGPILVSLLTRHRMIRWYDIPKKPPWCPPHKVLLAGWITIYFVMGYASYLVW 65

Query: 87  AD-GGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVV--IAFLFCVLDCVTLFACYLAFK 146
            D GG  G   ALPL +  + L+V W  L+    +    +A L  +L    + +  L + 
Sbjct: 66  KDLGGGFGRPLALPLGLYAVQLAVSWAVLIFFFAAHAHGLALLHMLLLYGLVVSTALIWH 125

Query: 147 RVNPFAKDLMKPCLAWTAYLSAV 166
            +N  A  L+ P LAW    +++
Sbjct: 126 PINKLAAVLLLPYLAWLTVTASI 148

[Close]

BLAST of CsaV3_3G014620 vs. ExPASy TrEMBL
Match: A0A0A0L583 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G154290 PE=3 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 4.1e-87
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI 60
           MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI
Sbjct: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI 60

Query: 61  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 120
           GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV
Sbjct: 61  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 120

Query: 121 VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVT 167
           VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVT
Sbjct: 121 VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVT 166

[Close]

BLAST of CsaV3_3G014620 vs. ExPASy TrEMBL
Match: A0A5D3CWC4 (Translocator protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001010 PE=3 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 6.2e-83
Identity = 159/166 (95.78%), Postives = 163/166 (98.19%), Query Frame = 0


Query: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI 60
           MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIA IFLFGRSSRH+PNRNRPIWI
Sbjct: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAVIFLFGRSSRHFPNRNRPIWI 60

Query: 61  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 120
           GPLWL+QLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVW+PLVLVIRSV
Sbjct: 61  GPLWLLQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWSPLVLVIRSV 120

Query: 121 VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVT 167
           VIAFLFCVLD VTLFACY AF+RVNPFAKDLMKPCLAWTAYLSAVT
Sbjct: 121 VIAFLFCVLDFVTLFACYRAFERVNPFAKDLMKPCLAWTAYLSAVT 166

[Close]

BLAST of CsaV3_3G014620 vs. ExPASy TrEMBL
Match: A0A1S4DTF2 (translocator protein homolog OS=Cucumis melo OX=3656 GN=LOC107990392 PE=3 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 6.2e-83
Identity = 159/166 (95.78%), Postives = 163/166 (98.19%), Query Frame = 0


Query: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI 60
           MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIA IFLFGRSSRH+PNRNRPIWI
Sbjct: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAVIFLFGRSSRHFPNRNRPIWI 60

Query: 61  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 120
           GPLWL+QLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVW+PLVLVIRSV
Sbjct: 61  GPLWLLQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWSPLVLVIRSV 120

Query: 121 VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVT 167
           VIAFLFCVLD VTLFACY AF+RVNPFAKDLMKPCLAWTAYLSAVT
Sbjct: 121 VIAFLFCVLDFVTLFACYRAFERVNPFAKDLMKPCLAWTAYLSAVT 166

[Close]

BLAST of CsaV3_3G014620 vs. ExPASy TrEMBL
Match: A0A6J1ICB9 (translocator protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111474208 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.8e-75
Identity = 142/164 (86.59%), Postives = 155/164 (94.51%), Query Frame = 0


Query: 3   SSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGP 62
           SS+PPFKSRPESKYTKAKRALRSLAVSVAIP++LTIA IFLFGRSSRH+PNRNRPIW+ P
Sbjct: 2   SSSPPFKSRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVAP 61

Query: 63  LWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVI 122
           LWL+ LSSI SSFL+GLAAWLVWADGGFH GSNALPLYIAHLSLSVVWNPLVLVIR++++
Sbjct: 62  LWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRALLL 121

Query: 123 AFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVT 167
           AFLFCVLD VTL+ACY  FKRVNPFAKDL+KPCLAWTAYL AVT
Sbjct: 122 AFLFCVLDFVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVT 165

[Close]

BLAST of CsaV3_3G014620 vs. ExPASy TrEMBL
Match: A0A6J1FZS9 (translocator protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111449384 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.1e-74
Identity = 142/164 (86.59%), Postives = 154/164 (93.90%), Query Frame = 0


Query: 3   SSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGP 62
           SS+PPFKSRPESKYTKAKRALRSLAVSVAIP++LTIA IFLFGRSSRH+PNRNRPIW+ P
Sbjct: 57  SSSPPFKSRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVAP 116

Query: 63  LWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVI 122
           LWL+ LSSI SSFL+GLAAWLVWADGGFH GSNALPLYIAHLSLSVVWNPLVLVIR+ ++
Sbjct: 117 LWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRARLL 176

Query: 123 AFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVT 167
           AFLFCVLD VTL+ACY  FKRVNPFAKDL+KPCLAWTAYL AVT
Sbjct: 177 AFLFCVLDLVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVT 220

[Close]

BLAST of CsaV3_3G014620 vs. TAIR 10
Match: AT2G47770.1 (TSPO(outer membrane tryptophan-rich sensory protein)-related )

HSP 1 Score: 135.6 bits (340), Expect = 3.8e-32
Identity = 70/160 (43.75%), Postives = 96/160 (60.00%), Query Frame = 0


Query: 9   KSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQL 68
           K + + K   AKR L+SL V+VA PV +T+ A +  G S  +        WI PLWL+  
Sbjct: 33  KGKRDQKRAMAKRGLKSLTVAVAAPVLVTLFATYFLGTSDGYGNRAKSSSWIPPLWLLHT 92

Query: 69  SSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCV 128
           + + SS L+GLAAWLVW DGGFH   NAL LY+A   L +VW+P+   + S V      +
Sbjct: 93  TCLASSGLMGLAAWLVWVDGGFHKKPNALYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWL 152

Query: 129 LDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTVR 169
                LF CY AF  ++P A +L+KPCLAW A+++AV V+
Sbjct: 153 GQSAALFGCYKAFNEISPVAGNLVKPCLAWAAFVAAVNVK 192

The following BLAST results are available for this feature:

BLAST of CsaV3_3G014620 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57143.2	7.8e-88	100.00	hypothetical protein Csa_010693 [Cucumis sativus]	[more]
XP_004134488.1	8.6e-87	100.00	translocator protein homolog [Cucumis sativus]	[more]
XP_016898980.1	1.3e-82	95.78	PREDICTED: translocator protein homolog [Cucumis melo] >KAA0049494.1 translocato...	[more]
XP_038878873.1	3.5e-80	92.17	translocator protein homolog [Benincasa hispida]	[more]
XP_023540366.1	7.5e-75	86.59	translocator protein homolog [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_3G014620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82245	5.3e-31	43.75	Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1	[more]
Q9GMC9	2.2e-05	28.68	Translocator protein OS=Ovis aries OX=9940 GN=TSPO PE=1 SV=1	[more]
E2RDM9	7.2e-04	27.97	Translocator protein 2 OS=Canis lupus familiaris OX=9615 GN=TSPO2 PE=1 SV=1	[more]

BLAST of CsaV3_3G014620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L583	4.1e-87	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G154290 PE=3 SV=1	[more]
A0A5D3CWC4	6.2e-83	95.78	Translocator protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S4DTF2	6.2e-83	95.78	translocator protein homolog OS=Cucumis melo OX=3656 GN=LOC107990392 PE=3 SV=1	[more]
A0A6J1ICB9	4.8e-75	86.59	translocator protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111474208 PE=3 SV...	[more]
A0A6J1FZS9	1.1e-74	86.59	translocator protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111449384 PE=3 ...	[more]

BLAST of CsaV3_3G014620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47770.1	3.8e-32	43.75	TSPO(outer membrane tryptophan-rich sensory protein)-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004307	TspO/MBR-related protein	PFAM	PF03073	TspO_MBR	coord: 29..167 e-value: 1.5E-20 score: 73.6
IPR004307	TspO/MBR-related protein	PIRSF	PIRSF005859	PBR	coord: 15..168 e-value: 1.7E-31 score: 106.9
IPR004307	TspO/MBR-related protein	PANTHER	PTHR10057	PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR	coord: 4..167
IPR004307	TspO/MBR-related protein	CDD	cd15904	TSPO_MBR	coord: 26..166 e-value: 3.80038E-24 score: 89.8636
IPR038330	TspO/MBR-related superfamily	GENE3D	1.20.1260.100	TspO/MBR protein	coord: 20..168 e-value: 2.3E-21 score: 78.0
None	No IPR available	PANTHER	PTHR10057:SF6	TSPO/MBR FAMILY PROTEIN	coord: 4..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G014620.1	CsaV3_3G014620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane