CsaV3_3G014340 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G014340
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 10744206 .. 10744814 (+)
RNA-Seq Expression	CsaV3_3G014340
Synteny	CsaV3_3G014340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGGAGAGAATAATTTCATTTTCTTTAGAGTAAAACAAAAAGAGAAGAAATTTCCAGTAACCTTGGAAGAATCACAGTCGTTCAATTCCTTCACTCCATCACTAACCGGAGCGGCTGAGATCCATTGAGATCAGGAAACGGCGACGTTTTATACAAGGGTGTGGTTGGTGAGGAGTCTTAAATGGGAGCGCCGGTGGTCGGGTCGACCCGGAAAAGTGCACCACGTGTCGGCAAAAGAACCCGGAAACCGGAGCAGGAGGTGAGCCGGTGGTCAAAAAGTGGGTTTCTTTTTCACTTGGAAGATGGATGGCCACAAGTGAGAAGGGGTAGTTTGGTAATTAAATCCCTCGTTTCTAATTGGTTCGCTTAACTCTTCCGAAGCTCCCGAGTGTCGGCGACCTATTTGCTCATTTTCCTTTTCAAACAAATTCTTCTTATCTACGGACCGACCTATACTGCTCTATCTGAGCTCTCTCTACTTTACTAAATTCACCATAACTATTCTTACCATCCTTTTATTTTTGTTTTTTTAATTCCTAATAAATCTTTAACCAACTTCTAAGTATCAATACTAGATTCAAATATCATGGTTTTAAAGCTATTTTTTG

mRNA sequence

ATGGGAGCGCCGGTGGTCGGGTCGACCCGGAAAAGTGCACCACGTGTCGGCAAAAGAACCCGGAAACCGGAGCAGGAGGTGAGCCGGTGGTCAAAAAGTGGGTTTCTTTTTCACTTGGAAGATGGATGGCCACAAGTGAGAAGGGGTAGTTTGGTAATTAAATCCCTCGTTTCTAATTGGTTCGCTTAA

Coding sequence (CDS)

ATGGGAGCGCCGGTGGTCGGGTCGACCCGGAAAAGTGCACCACGTGTCGGCAAAAGAACCCGGAAACCGGAGCAGGAGGTGAGCCGGTGGTCAAAAAGTGGGTTTCTTTTTCACTTGGAAGATGGATGGCCACAAGTGAGAAGGGGTAGTTTGGTAATTAAATCCCTCGTTTCTAATTGGTTCGCTTAA

Protein sequence

MGAPVVGSTRKSAPRVGKRTRKPEQEVSRWSKSGFLFHLEDGWPQVRRGSLVIKSLVSNWFA*

Homology

[Close]

BLAST of CsaV3_3G014340 vs. NCBI nr
Match: KGN57088.1 (hypothetical protein Csa_011690 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 2.2e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MGAPVVGSTRKSAPRVGKRTRKPEQEVSRWSKSGFLFHLEDGWPQVRRGSLVIKSLVSNW 60
          MGAPVVGSTRKSAPRVGKRTRKPEQEVSRWSKSGFLFHLEDGWPQVRRGSLVIKSLVSNW
Sbjct: 1  MGAPVVGSTRKSAPRVGKRTRKPEQEVSRWSKSGFLFHLEDGWPQVRRGSLVIKSLVSNW 60

Query: 61 FA 63
          FA
Sbjct: 61 FA 62

[Close]

BLAST of CsaV3_3G014340 vs. ExPASy TrEMBL
Match: A0A0A0L5S6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G152640 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MGAPVVGSTRKSAPRVGKRTRKPEQEVSRWSKSGFLFHLEDGWPQVRRGSLVIKSLVSNW 60
          MGAPVVGSTRKSAPRVGKRTRKPEQEVSRWSKSGFLFHLEDGWPQVRRGSLVIKSLVSNW
Sbjct: 1  MGAPVVGSTRKSAPRVGKRTRKPEQEVSRWSKSGFLFHLEDGWPQVRRGSLVIKSLVSNW 60

Query: 61 FA 63
          FA
Sbjct: 61 FA 62

The following BLAST results are available for this feature:

BLAST of CsaV3_3G014340 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57088.1	2.2e-27	100.00	hypothetical protein Csa_011690 [Cucumis sativus]	[more]

BLAST of CsaV3_3G014340 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G014340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5S6	1.1e-27	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G152640 PE=4 SV=1	[more]

BLAST of CsaV3_3G014340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G014340.1	CsaV3_3G014340.1	mRNA