CsaV3_3G014050 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G014050
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	serine/arginine-rich SC35-like splicing factor SCL28
Location	chr3: 10515950 .. 10521250 (+)
RNA-Seq Expression	CsaV3_3G014050
Synteny	CsaV3_3G014050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGATGTAAATACGAAAAAACAAGAGAATTCTTAAAAAATAGAAACGAAAACAGAATCAAACAAAATGTTATAAAATTTGCCTAAAATCCCCAAATCTCACCGATCATGTCATGGGTGGACGTTTAAATCTTGAAGCGTAGGGTTTAGGGCATGATTTTATCTCCAACCCGATCGTCTCCCTCCCTCCAAAATATTCGAAGCCCATCATTCAACTCATTTTCATTCTCCCAAACTCCCATTAGGGTTAGGGTTTTCACTGCTTCAGCTTCCGAGTAAGACACGCTAATAATCCACTATGGCCAGGTACCGGAGCCGGAGTAGAAGTTACAGCCCTCGCCGGCGTAGTAGAACCCCACCACGCGGTCGGAAGAGGTATGACGACGACCCTCGAGACCGGTACCGCGAAAGCAGGTCTCATAGGGACCGTCGCTCTCCTGCTCCTTCTGGTTTACTCGTGCGAAATCTCCCGCTTGATGCTAGGTATTTCATGTTCTTCTTCGAGCCCTTTCTATTATTTATAATGTCTCGCTTTGTTAGTTTGATGGAGGAATTGAATGCCTCATTTGCTTTCGTGTTTGTACATACTAGTGCATTTTTGTTTAGAATCTGGAATTTTGGGCAGGCTGTATAGGGGGACTTACCGTATGAATTTTGATTAGTAGTCATTTGAAGAGTTGATCACAAAGAGCATTTGTTGCAAGTAATTTATTGTCAAGCCGTGTGCTATCGTACTACATTGTATTGTTTTCTCGTTTTCTGTAGTCTATCCATTCTATATATTAAGAGGAATGATTGAGTGTTTTCATTGTGTACCATGCAGGCCGGAAGATCTTAGGATCCCTTTTGAGCGATTTGGTCCTGTTAAGGACGTGTATCTGCCGAAGAACTACTACACTGGGTATGGCCGCTTTCATGTTAACGTGTGCGCTTTTGGGTGTTGAAGAAACCACTTTATTATTTCCTGGTATTTTTTTCTCTTAATTATCGGGGTATCCACACTAGATAACAGAGTTTTGGCTATATTAGTTATGGAAGAAAAAAGTTGAGAAAATGTTTGAGATTAAGTTGTGGGATCTTAATTTCGGAGCCCTGCTGGAGTTTTAACGATTAAATTTCCTTTACCATCATGTAATTATTTGGTTAAGATCGACAACTAGTCAATCTGAAAGAATGAAGTGTAGCGTTTTCTGCATATGGAAGGAATCTGCAAATTTATCGGATAACCTGAACTTAGTTCACACTTAATCCTAGAGAGGATGAATTGACTGACAAGGAATTATTTGTAGGATAATGATGTGTTTGTTAGTCTATAATAGCAGTGATCAACAAGAAAGAAATTCCTGAAGCGTGTGTGAATTAGTTGAGTTGTCAGTGGCTCTGCATTAAATATGTGTCTAAAAGTTAATACTGCCTGGCAACCCTTTCTGGTTATTACTTATTAGTACAGAGATCTACTTTGCTTTCTCTCACCTTATGATATCATTCTCTTTATTGCCTATTTGTAGGGAGCCTCGAGGATTTGGATTTGTGAAGTTTCGGTTTGCAGAAGACGCGGCTGAAGCAAAACAGCAGCTAAATCATACAGTTATAGGTGGACGGGAGATACGAATCGTGTTTGCTGAGGAGAACAGGAAAACTCCTCAAGAAATGCGTGTGACTTCACGCTCAAGGTTCAATGGCCTTCCTCTTAACTTCTAATCATGTAGTATCTTTTTGGTTGAATATCTTCTCCATGAAACCAATTTCTTTAACTTTGATCTATTATATTGATTGTCTCTTGTTTCTCATATACAGTGGTAGAAGCTACAGAAGACGTTCTCCAGCAAGGTCTCCGAGACGGCGAAATCGTTGTTAGTGTCAATGCATTTATCTTTCTTCTTTCTTTCCTTTTTGCTGACTTTCATGACAAAAATTGCATTGGGTTGATGATCTTTGATGTTATCATCGTGATGCAATATTGTAATTAGACCCTTGATTTTTATTCTCAACCAGCCTTTTGTATTTGACTGCAGCTTACTCGCGCTCACCTTCACCTGCCAGGCACGACTCAAGGTTGGATCTTATTTATCATACTTGTTTTACTTCTAGCAAGACTAACATCATTATCGTCCTGCCGTTTCCATTACTTCTTACTTTTGTACATTTTTTTGAAATATTGGTTGTTCCTGTCTTGATGTTTACTTGTTTAGTAAGCTGCACATGCCTTCTTTGAATTTTATAATTTTGTACTAGCATTCTTTTTGGATGAGAAGCATTGTATAATATTTTTGAAATTTTGTACTTGTCTTATATAGAGTACCCAAACGCCAAAGCCCCAAAATGGAAGTGCTTATTCCTTGTTTTAATTTTCAGTGGAACCAAAATGATTGTCTGTAAATTTTATGTACAATTAAGTTCATTTTTGGTGAAAATCATTTTTGTAGAAATATTCCAATATACTCGATGTAATTATATTTTCGACCAGAACCTCAAGACTTCCGTTTTGTTCAAAAAACCTCTTACAATTTTAAGTAACAAAATCCATTTCTAATGGATGAGCCATCTTTGTTCCTTTGTCATGTTGTGAAGTGCATAGTCAGTAAATATAAGTAGCACTCTGTCGTTTCTGAAATGATTATAATCTCTTTCGTCATTCGTATAATCACTCAAAAAATGCTTTTAATCATTTAAAATCAATTTTGTAGTCTGAAAAATGCATTTAAGAGTGAAAATTAAAAATTGAATTGATTTTGTGTGACTAAAGGTGTTGTGTTTCAAAGTGACTGTAGTACATGACAAGTGATTTTAACAATTTCAAAATCACACTCAAACATGCACTAAACATTGGTATCAGTCTGACAATAATTTTGACACTTCTAATTTTCATTTCCCCATCAGGTTTATAACATCAAAGCTATATATTAAATCTAAGCAACAGTTTCAGTTTTTTGTTGTTTTACAGGCTTTAGTTGTAGAATTTTTATATCATATGCTTGAATGTTATCATGGATAAGCAAAAACACAGAATTTAATGTTTGATTTGATGCACGTGGAATATTCTACTCCCTTCATGGTACAGAGTTGCATTGCAGGACATTGTATACAATCTACTTGATTCCTTGTTTATGCAGATATTAAAGTGTAAAGGGAGACTTTAAAGACTTGTTGATTAATAAAGTTTAACAAGAAAAGCGATCATAAAGTGATGGGCAACTTGCTTACTTTACCTATCGAACCCTCTCCATGAGTACAATCTATTACTTTTTTAATTACATTAGTTGCATGGTTTTTTATCGTTTGTTTACATCTGTTTTTTTAGGCAGAAGTTGAGCATTGACGAGAGTTTTAAATCAAATTTTATCTCTGGTTCTTTTTTCCCCATTTTTTCCTCCCTTACAAATCTCAACCATTTATCAGCAAGAAAGTGATCTTTAAGTTTGATATCTTCTTTTGCATATACTATCCAGTTAAGAAAGATTAGAGCTTATAGTTGGCCAAAGAAAGAAATCATCTTCAAAGGAGAAAAGGCCAAAGTTTTACTGGTTGTCGTATGGTGACATTGTCCAAGAAAAGATAATGTGTTTTTTAGAAAGTTGGGGCAAAGAGAGCTATGAACTTGTCAGAAGCTGATCAACCAGTACAGCTTAATAGAGCATAATTCTCAGTGTTTGGATCTACTTGTCATTATTTTGTTCGGAAACCTGAAAATGGTGCAGGTAAAAGTCATGTTTTAGTTGATCAGTTTTGAAAATGATGTTGATAGAAAATTGTGCTTATAAAAGTATGATCAAGTATCATAAGTACCTATTGAACGTACCTCATTGGGGCCTTTGAAGACTGCTTGGACAGGTTTTCTTTCCTGTTAGAGAGAGAGTTGGTTTGTTGTGTTTCAATTCTGAATGAAAATCGTTTCTGTTTTATATGTTGATTTTCGTAATTTTTTTTTGTTGTTGTTGTGCATGATGCAGGAGCCGTGGGGCAAGGGATGAGTATCTATCTCCTGCACGATCAAGATCAATTTCACATTCTCGTTCCCCTCGTGATAGGCGGGATTACAGCCGATCTCCTACTCCGAAGGATAATGGTCGTAGCCCTCGTGAAGTGGACAATGCACGGAGTAGATCAAGGAGTCCAAAGGGTGATAGTCGTAGTCCTTCTGGATCTCGTTCACGATCCTATAGGTATTTTGCCTTTTATGCTCCTTTACATTTTAAGTTTCCTTTTCTTATCTCTGCATTTCTGAGTAAGAGGATCTACACAGGGAAGTGCGTGTCGTACGTGTTGGTACTGGTAGTTTCAGAATTCATGGTGATTCTTTAAACTAAATAATTAAGTGTTATATTATTGTTTCATTTTACCTTGGTGAGAGAGACCTATGGTAGGATAGATGTCTGATATATAGGGCTAAGCTAATCTCCTAGAATATATAGACTGTTTAAGATGGAGGATGAACAAAGCTTTATTTAATAAGCTCTCACGATTCATGATATTCTCACAGGTGTTTGTTGAATTTAATTGGTTAGAAGAGGTGAGGAAGAAATGACATGTTTGAATCATTTGGTTTTTTCCTCCTTTGTTTCTTCGGTTATCTGTTGATCTTGTAGAATTTAGTGAAACCCTTTGGAGAGATTTTAATTCATTTCCTAATGTTCGCACTTTAATACAATATAAACTGGGGATGAGATTTGAGATCCCCTTGGTTAAGGGGGCAGCAAAATTCTTGACGTTGTTTTGTCATTATTGAACATTTCACACGTTCCACAGTGTGTTGTGTTTAGGCAGTAATCCTTTCCCCTGCTTAATTGAAGAATTTAAAATTTTGACTAACACCCTGCAATGTTGCTTCTGCAGTCCTCGCTGATAGAGTTTTGGAATTGTGTGGTGATTCTGCTGCAGTCAGTCGAGAATTGTTAAGTCTGCCTTCAGTTGTGGCCAGATGAACTATGCTATTCCATGCTTTGCAGTTTCTGTAAGGAATTTTATTTATATATGAGAGTAGGGAGGCGAGACTTGAGATATGGATTGAAGAACAATGAGTGTTGACTTCATATGAGTGCATGCTGGTACACTTCTACTTGACCTTTACTAGATTTAGGAAATTTGCCTTAAATTTCGTTTTTGTACTCTTGTACATACTCAGTGGTTGTATTTTTCAACTTAGTGGTCTTGTTTGTTTAATTATCAGTTCTATTTTGTTATTTAGTAATCCCTTTTCCCTTCCATTTTCTTTTCCAAAATTTGAACTCAGCAGTGCTAAAATAGAAACATAATCAATGAACATCCACTTTTTGAATGATAATAGGGTGCATTATTGAATGAC

mRNA sequence

ATGGCCAGGTACCGGAGCCGGAGTAGAAGTTACAGCCCTCGCCGGCGTAGTAGAACCCCACCACGCGGTCGGAAGAGGTATGACGACGACCCTCGAGACCGGTACCGCGAAAGCAGGTCTCATAGGGACCGTCGCTCTCCTGCTCCTTCTGGTTTACTCGTGCGAAATCTCCCGCTTGATGCTAGGCCGGAAGATCTTAGGATCCCTTTTGAGCGATTTGGTCCTGTTAAGGACGTGTATCTGCCGAAGAACTACTACACTGGGGAGCCTCGAGGATTTGGATTTGTGAAGTTTCGGTTTGCAGAAGACGCGGCTGAAGCAAAACAGCAGCTAAATCATACAGTTATAGGTGGACGGGAGATACGAATCGTGTTTGCTGAGGAGAACAGGAAAACTCCTCAAGAAATGCGTGTGACTTCACGCTCAAGTGGTAGAAGCTACAGAAGACGTTCTCCAGCAAGGTCTCCGAGACGGCGAAATCGTTCTTACTCGCGCTCACCTTCACCTGCCAGGCACGACTCAAGTTAA

Coding sequence (CDS)

ATGGCCAGGTACCGGAGCCGGAGTAGAAGTTACAGCCCTCGCCGGCGTAGTAGAACCCCACCACGCGGTCGGAAGAGGTATGACGACGACCCTCGAGACCGGTACCGCGAAAGCAGGTCTCATAGGGACCGTCGCTCTCCTGCTCCTTCTGGTTTACTCGTGCGAAATCTCCCGCTTGATGCTAGGCCGGAAGATCTTAGGATCCCTTTTGAGCGATTTGGTCCTGTTAAGGACGTGTATCTGCCGAAGAACTACTACACTGGGGAGCCTCGAGGATTTGGATTTGTGAAGTTTCGGTTTGCAGAAGACGCGGCTGAAGCAAAACAGCAGCTAAATCATACAGTTATAGGTGGACGGGAGATACGAATCGTGTTTGCTGAGGAGAACAGGAAAACTCCTCAAGAAATGCGTGTGACTTCACGCTCAAGTGGTAGAAGCTACAGAAGACGTTCTCCAGCAAGGTCTCCGAGACGGCGAAATCGTTCTTACTCGCGCTCACCTTCACCTGCCAGGCACGACTCAAGTTAA

Protein sequence

MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDSS*

Homology

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BLAST of CsaV3_3G014050 vs. NCBI nr
Match: KAE8650374.1 (hypothetical protein Csa_009978 [Cucumis sativus])

HSP 1 Score: 335.5 bits (859), Expect = 2.8e-88
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDSS 176
           IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDSS
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDSS 175

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BLAST of CsaV3_3G014050 vs. NCBI nr
Match: XP_004134179.1 (serine/arginine-rich SC35-like splicing factor SCL28 [Cucumis sativus])

HSP 1 Score: 334.0 bits (855), Expect = 8.1e-88
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDS 175
           IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDS
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDS 174

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BLAST of CsaV3_3G014050 vs. NCBI nr
Match: XP_008438778.1 (PREDICTED: serine/arginine-rich SC35-like splicing factor SCL28 [Cucumis melo])

HSP 1 Score: 330.9 bits (847), Expect = 6.8e-87
Identity = 173/174 (99.43%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDS 175
           IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRR RSYSRSPSPARHDS
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDS 174

[Close]

BLAST of CsaV3_3G014050 vs. NCBI nr
Match: KAA0049431.1 (serine/arginine-rich SC35-like splicing factor SCL28 [Cucumis melo var. makuwa] >TYK16110.1 serine/arginine-rich SC35-like splicing factor SCL28 [Cucumis melo var. makuwa])

HSP 1 Score: 330.9 bits (847), Expect = 6.8e-87
Identity = 173/174 (99.43%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDS 175
           IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRR RSYSRSPSPARHDS
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDS 174

[Close]

BLAST of CsaV3_3G014050 vs. NCBI nr
Match: XP_038878233.1 (serine/arginine-rich SC35-like splicing factor SCL28 [Benincasa hispida])

HSP 1 Score: 327.4 bits (838), Expect = 7.6e-86
Identity = 171/174 (98.28%), Postives = 172/174 (98.85%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           M RYRSRSRSYSPRRRSRTPPRGRKR+DDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD
Sbjct: 1   MGRYRSRSRSYSPRRRSRTPPRGRKRHDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDS 175
           IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRR RSYSRSPSPARHDS
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDS 174

[Close]

BLAST of CsaV3_3G014050 vs. ExPASy Swiss-Prot
Match: Q1PDV2 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 7.7e-57
Identity = 126/176 (71.59%), Postives = 142/176 (80.68%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MAR RSRSRSYSPR R R+PPR RK YDD   +R RE  S RD  S  PSGLL+RNLPLD
Sbjct: 1   MARARSRSRSYSPRPRDRSPPRERKGYDD---NRLRERPSSRDHESSGPSGLLIRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARP DLR  FERFGP+KD+YLP+NYYTGEPRGFGFVK+R+AEDAAEA +++NH VIGGRE
Sbjct: 61  ARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGR--SYRRRSPARSPRRRNRSYSRSPSPARHDS 175
           I IVFAEENRKTPQEMR T+ +SGR   Y+R S  RSPRRR RS+SRS SP R +S
Sbjct: 121 IAIVFAEENRKTPQEMRTTNGTSGRHGDYKRTS-HRSPRRRYRSHSRSRSPPRRES 172

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BLAST of CsaV3_3G014050 vs. ExPASy Swiss-Prot
Match: Q9LHP2 (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.5e-33
Identity = 90/167 (53.89%), Postives = 109/167 (65.27%), Query Frame = 0


Query: 7   RSRSYSPRRRSRTPPR--GRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPE 66
           R RSY+P     +PPR  GR+     PR R+  SR      S  P+ LLVRNL  D R E
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPRGRFGGSRD-----SDLPTSLLVRNLRHDCRQE 61

Query: 67  DLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIV 126
           DLR PFE+FGPVKD+YLP++YYTG+PRGFGF++F    DAAEAK Q++  ++ GRE+ +V
Sbjct: 62  DLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVV 121

Query: 127 FAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPAR 172
           FAEENRK P EMR   R  GRS R +   RSP R    YSRSP P R
Sbjct: 122 FAEENRKKPTEMRTRDR-GGRSNRFQDRRRSPPR----YSRSPPPRR 153

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BLAST of CsaV3_3G014050 vs. ExPASy Swiss-Prot
Match: Q9SEU4 (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=3702 GN=SCL33 PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 7.2e-31
Identity = 91/179 (50.84%), Postives = 108/179 (60.34%), Query Frame = 0


Query: 7   RSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDL 66
           R RSY+P     +PPRG  R    P  R R     RD     P+ LLVRNL  D R EDL
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPRGRYGGRSRD----LPTSLLVRNLRHDCRQEDL 61

Query: 67  RIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIVFA 126
           R  FE+FGPVKD+YLP++YYTG+PRGFGFV+F    DAA+AK  ++  ++ GRE+ +VFA
Sbjct: 62  RKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFA 121

Query: 127 EENRKTPQEMRVTSRSSGR-SYRRRSPAR-------SPRRRNRSYSR-----SPSPARH 173
           EENRK P EMR   R  GR   RRR+P R        P RR RS SR     SP P RH
Sbjct: 122 EENRKKPTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRH 171

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BLAST of CsaV3_3G014050 vs. ExPASy Swiss-Prot
Match: Q8L3X8 (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=3702 GN=SCL30 PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.8e-29
Identity = 81/165 (49.09%), Postives = 100/165 (60.61%), Query Frame = 0


Query: 11  YSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPF 70
           YSP RR     RGR      PR  Y        RR  +   LLVRN+PLD RPE+LR PF
Sbjct: 9   YSPPRRG-YGGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPEELREPF 68

Query: 71  ERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIVFAEENR 130
           ERFGPV+DVY+P++YY+G+PRGF FV+F  A DA EA++ +N     GREI +V A E+R
Sbjct: 69  ERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVVVASESR 128

Query: 131 KTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDSS 176
           K P+EMRV +R+  R           R R+RS SRS SP R   S
Sbjct: 129 KRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISRSRSPRRPSDS 172

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BLAST of CsaV3_3G014050 vs. ExPASy Swiss-Prot
Match: Q8WXF0 (Serine/arginine-rich splicing factor 12 OS=Homo sapiens OX=9606 GN=SRSF12 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.5e-17
Identity = 56/131 (42.75%), Postives = 77/131 (58.78%), Query Frame = 0


Query: 47  PAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAE 106
           P  + L +RN+    RPEDLR  F R+GP+ DVY+P ++YT  PRGF +V+F    DA +
Sbjct: 7   PPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAED 66

Query: 107 AKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSR---SSGRSYRRRSPARSPRRRNRSY 166
           A   LN   + GR+I I FA+ +RKTP +M+   R   S     R RSP++  R R+RS 
Sbjct: 67  ALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQR-RTRSRSS 126

Query: 167 SRSPSPARHDS 175
           S   +  R DS
Sbjct: 127 SWGRNRRRSDS 136

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BLAST of CsaV3_3G014050 vs. ExPASy TrEMBL
Match: A0A5D3CXM8 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G00340 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 3.3e-87
Identity = 173/174 (99.43%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDS 175
           IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRR RSYSRSPSPARHDS
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDS 174

[Close]

BLAST of CsaV3_3G014050 vs. ExPASy TrEMBL
Match: A0A1S3AXW0 (serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucumis melo OX=3656 GN=LOC103483786 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 3.3e-87
Identity = 173/174 (99.43%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDS 175
           IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRR RSYSRSPSPARHDS
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDS 174

[Close]

BLAST of CsaV3_3G014050 vs. ExPASy TrEMBL
Match: A0A6J1IQ05 (serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucurbita maxima OX=3661 GN=LOC111479462 PE=3 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.4e-85
Identity = 171/174 (98.28%), Postives = 171/174 (98.28%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDS 175
           IRIVFAEENRKTPQEMRVTSRSSGRS RRRSPARSPRRR  SYSRSPSPARHDS
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDS 174

[Close]

BLAST of CsaV3_3G014050 vs. ExPASy TrEMBL
Match: A0A6J1GW11 (serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucurbita moschata OX=3662 GN=LOC111457670 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 3.1e-85
Identity = 170/174 (97.70%), Postives = 171/174 (98.28%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MA+YRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD
Sbjct: 1   MAKYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDS 175
           IRIVFAEENRKTPQEMRVTSRSSGRS RRRSPARSPRRR  SYSRSPSPARHDS
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDS 174

[Close]

BLAST of CsaV3_3G014050 vs. ExPASy TrEMBL
Match: A0A6J1C7W4 (serine/arginine-rich SC35-like splicing factor SCL28 OS=Momordica charantia OX=3673 GN=LOC111009197 PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 6.9e-85
Identity = 169/174 (97.13%), Postives = 171/174 (98.28%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSR+PPRGRKRYDDDPRDRY ESRS+RDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRSPPRGRKRYDDDPRDRYHESRSYRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLR PFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDS 175
           IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRR RSYSRSPSPARHDS
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDS 174

[Close]

BLAST of CsaV3_3G014050 vs. TAIR 10
Match: AT5G18810.1 (SC35-like splicing factor 28 )

HSP 1 Score: 221.5 bits (563), Expect = 5.4e-58
Identity = 126/176 (71.59%), Postives = 142/176 (80.68%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MAR RSRSRSYSPR R R+PPR RK YDD   +R RE  S RD  S  PSGLL+RNLPLD
Sbjct: 1   MARARSRSRSYSPRPRDRSPPRERKGYDD---NRLRERPSSRDHESSGPSGLLIRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARP DLR  FERFGP+KD+YLP+NYYTGEPRGFGFVK+R+AEDAAEA +++NH VIGGRE
Sbjct: 61  ARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGR--SYRRRSPARSPRRRNRSYSRSPSPARHDS 175
           I IVFAEENRKTPQEMR T+ +SGR   Y+R S  RSPRRR RS+SRS SP R +S
Sbjct: 121 IAIVFAEENRKTPQEMRTTNGTSGRHGDYKRTS-HRSPRRRYRSHSRSRSPPRRES 172

[Close]

BLAST of CsaV3_3G014050 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 142.5 bits (358), Expect = 3.2e-34
Identity = 90/167 (53.89%), Postives = 109/167 (65.27%), Query Frame = 0


Query: 7   RSRSYSPRRRSRTPPR--GRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPE 66
           R RSY+P     +PPR  GR+     PR R+  SR      S  P+ LLVRNL  D R E
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPRGRFGGSRD-----SDLPTSLLVRNLRHDCRQE 61

Query: 67  DLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIV 126
           DLR PFE+FGPVKD+YLP++YYTG+PRGFGF++F    DAAEAK Q++  ++ GRE+ +V
Sbjct: 62  DLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVV 121

Query: 127 FAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPAR 172
           FAEENRK P EMR   R  GRS R +   RSP R    YSRSP P R
Sbjct: 122 FAEENRKKPTEMRTRDR-GGRSNRFQDRRRSPPR----YSRSPPPRR 153

[Close]

BLAST of CsaV3_3G014050 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 135.2 bits (339), Expect = 5.1e-32
Identity = 91/179 (50.84%), Postives = 108/179 (60.34%), Query Frame = 0


Query: 7   RSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDL 66
           R RSY+P     +PPRG  R    P  R R     RD     P+ LLVRNL  D R EDL
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPRGRYGGRSRD----LPTSLLVRNLRHDCRQEDL 61

Query: 67  RIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIVFA 126
           R  FE+FGPVKD+YLP++YYTG+PRGFGFV+F    DAA+AK  ++  ++ GRE+ +VFA
Sbjct: 62  RKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFA 121

Query: 127 EENRKTPQEMRVTSRSSGR-SYRRRSPAR-------SPRRRNRSYSR-----SPSPARH 173
           EENRK P EMR   R  GR   RRR+P R        P RR RS SR     SP P RH
Sbjct: 122 EENRKKPTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRH 171

[Close]

BLAST of CsaV3_3G014050 vs. TAIR 10
Match: AT1G55310.2 (SC35-like splicing factor 33 )

HSP 1 Score: 135.2 bits (339), Expect = 5.1e-32
Identity = 91/179 (50.84%), Postives = 108/179 (60.34%), Query Frame = 0


Query: 7   RSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDL 66
           R RSY+P     +PPRG  R    P  R R     RD     P+ LLVRNL  D R EDL
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPRGRYGGRSRD----LPTSLLVRNLRHDCRQEDL 61

Query: 67  RIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIVFA 126
           R  FE+FGPVKD+YLP++YYTG+PRGFGFV+F    DAA+AK  ++  ++ GRE+ +VFA
Sbjct: 62  RKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFA 121

Query: 127 EENRKTPQEMRVTSRSSGR-SYRRRSPAR-------SPRRRNRSYSR-----SPSPARH 173
           EENRK P EMR   R  GR   RRR+P R        P RR RS SR     SP P RH
Sbjct: 122 EENRKKPTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRH 171

[Close]

BLAST of CsaV3_3G014050 vs. TAIR 10
Match: AT3G55460.1 (SC35-like splicing factor 30 )

HSP 1 Score: 128.6 bits (322), Expect = 4.8e-30
Identity = 81/165 (49.09%), Postives = 100/165 (60.61%), Query Frame = 0


Query: 11  YSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPF 70
           YSP RR     RGR      PR  Y        RR  +   LLVRN+PLD RPE+LR PF
Sbjct: 9   YSPPRRG-YGGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPEELREPF 68

Query: 71  ERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIVFAEENR 130
           ERFGPV+DVY+P++YY+G+PRGF FV+F  A DA EA++ +N     GREI +V A E+R
Sbjct: 69  ERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVVVASESR 128

Query: 131 KTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDSS 176
           K P+EMRV +R+  R           R R+RS SRS SP R   S
Sbjct: 129 KRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISRSRSPRRPSDS 172

The following BLAST results are available for this feature:

BLAST of CsaV3_3G014050 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650374.1	2.8e-88	100.00	hypothetical protein Csa_009978 [Cucumis sativus]	[more]
XP_004134179.1	8.1e-88	100.00	serine/arginine-rich SC35-like splicing factor SCL28 [Cucumis sativus]	[more]
XP_008438778.1	6.8e-87	99.43	PREDICTED: serine/arginine-rich SC35-like splicing factor SCL28 [Cucumis melo]	[more]
KAA0049431.1	6.8e-87	99.43	serine/arginine-rich SC35-like splicing factor SCL28 [Cucumis melo var. makuwa] ...	[more]
XP_038878233.1	7.6e-86	98.28	serine/arginine-rich SC35-like splicing factor SCL28 [Benincasa hispida]	[more]

BLAST of CsaV3_3G014050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1PDV2	7.7e-57	71.59	Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=...	[more]
Q9LHP2	4.5e-33	53.89	Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX...	[more]
Q9SEU4	7.2e-31	50.84	Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=...	[more]
Q8L3X8	6.8e-29	49.09	Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=...	[more]
Q8WXF0	4.5e-17	42.75	Serine/arginine-rich splicing factor 12 OS=Homo sapiens OX=9606 GN=SRSF12 PE=2 S...	[more]

BLAST of CsaV3_3G014050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CXM8	3.3e-87	99.43	Serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucumis melo var. makuwa...	[more]
A0A1S3AXW0	3.3e-87	99.43	serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucumis melo OX=3656 GN=...	[more]
A0A6J1IQ05	1.4e-85	98.28	serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucurbita maxima OX=3661...	[more]
A0A6J1GW11	3.1e-85	97.70	serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucurbita moschata OX=36...	[more]
A0A6J1C7W4	6.9e-85	97.13	serine/arginine-rich SC35-like splicing factor SCL28 OS=Momordica charantia OX=3...	[more]

BLAST of CsaV3_3G014050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18810.1	5.4e-58	71.59	SC35-like splicing factor 28	[more]
AT3G13570.1	3.2e-34	53.89	SC35-like splicing factor 30A	[more]
AT1G55310.1	5.1e-32	50.84	SC35-like splicing factor 33	[more]
AT1G55310.2	5.1e-32	50.84	SC35-like splicing factor 33	[more]
AT3G55460.1	4.8e-30	49.09	SC35-like splicing factor 30	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 51..124 e-value: 1.4E-19 score: 81.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 52..122 e-value: 2.2E-19 score: 69.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 50..128 score: 17.745176
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 51..124 e-value: 0.0012 score: 28.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 25..168 e-value: 2.4E-28 score: 101.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..175
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..54
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..170
None	No IPR available	PANTHER	PTHR23147:SF133	SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL28	coord: 1..170
IPR000221	Protamine P1	PROSITE	PS00048	PROTAMINE_P1	coord: 2..12
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 47..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G014050.1	CsaV3_3G014050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007283	spermatogenesis
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003676	nucleic acid binding