CsaV3_3G013560 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G013560
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	DEAD-box ATP-dependent RNA helicase 58
Location	chr3: 10232396 .. 10236702 (-)
RNA-Seq Expression	CsaV3_3G013560
Synteny	CsaV3_3G013560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACTTTAAGCCTTATCCTTCTTCGAACTTCGAACTTTAGGCGGTTAGGTTCGCATCGGCAACTTCACAACCGGCGCCCGCGATTTCTCTATTACACCCCTTCTTCCCTCTTCCTCTCAGCTCCAGTAGACTCTCTCGCCATTTTCCCTTCCCCCCTTTTTGAACCTATCCAATATTGCGCGAGCTCACTCCAATTCCAATGGCTGCAACCTTTCTTCCCACTACCAAATTCCCTCCTCCTTGGCTGCTCCTCTCATCTGAAAGGTCTTTTCCCGTTCATTTATCCTTTCAATTACCAAATTTTATCAATACCAATGGACCCATCTACTCCACCTCAAAATCTAGGCCTCTGCAAGCCCTTCTGAGCTCTTCTTCTTTAAAGAACGTAGCTGAATCCAATTTCGAGGCTTCCACTCTCCGGGAAATCTGCAATGGACACGTTCCCGAGCATATACTGCGCAGGCAACTCTACATATTCCATCTATTCTTTTGAATTCCTTCTTAATTTATTATTTTGTCTTATGGGGTTTTTTTTTTTTTCCCCCTTCCATTTTCTTTCTTAAATGGTGTAGAACTGAGGAAATTGGATTTGTTGCCCCAACTGATGTGCAGAGGCAAGCTCTCCCAGTTTTGTTTTCGGGTCGGGATTGTGTGCTTCATGCGCAGGTCAAGTCTATGTATATAAAGTAATCTACTCGGAGAATGGACTCTTTTGGTTGTTTGTTTGTGTGGTATTTTGAAATTCTGTGTACTGTTCGTTACTTACTCTTATCCTTTTAGACAGGTTCTGGGAAGACACTGACATATTTGCTGTTGATATTTTCTGTAATCAACGCTAAAAAATCAGCTGTTCAAGCATTGATTGTAGTACCCACACGGGAGTTAGGAATGCAAGTGAGATTGAACTCTGTAACTTCCAGATTATGCTTGAACTTTATGTATTTTCTTCTTTCATCTGTTCTTGTTTTTCTTTTTGTAGTTCTGAAATTAGTTTTTTTTTATGGTAATCTTGTTTTTTACCTGGTGGAATGGAACTCAGGTTACAAAAGTTGCTAGGATGTTAGCCGCCAAGCCTGCTGCATCTGAAGATGGGCTAAATTCTTATGTTGTCATGGCTCTTTTAGATGGAGGCTTGTTGAGAAGACACAAGACTTGGTTAAAGGTGCTGCATCTGTTCCTCTTCTTTAAGTACACTCAATGGCTTTTATGTGATGTTGTCAAAAAACTGGAGAAGGGTTTTGGGTTAGATGGTGTTCGATACTTCTAATTGCATGTTTAGAATCTATGTTTTGACGGCTTATAGTTGCATTGTCATGAACTGAACTAGTGGTCAACAAGGCCACTGTAAATTGTTAAATGCTTAGAGGGATGGCTACAGGCTATGGTGGCTACCTACCAAGGGGTTATATCCTTCGAGTTTTTTTTGGCAACCAAGCATAGTAGGGTTAGATAGTTGTCTTGTGAGAGTAGTTGAGGTGTATGCAATTGGACCCAAACACTAACATGTATAGACAAAACAATGCATTGCCATAGCCAACTTCGTTTTGAGTTTCTAAAGTTTCACCGATGACATCTGATTGTTGTTTTTTCCATCTTCTTGCTACATTCTTGGGTTGTGATTAGTAGAAGAAACTCCTCATCCATATTATAACTTTGAGTTATGAAAATTTGTAGGCAGATCCCCCTGAAATACTGGTGGCGACTGTAGGAAGCTTGTGCCAAATGGTAGAGAGACAATTTCTTGACCTTGGTTCATTGAATGTGCTGGTAATTGATGAGGTACTTGAAAAGAAATTTTGTTTTTCACTAGCTTCTTGGCACATACTTTCTGGACAGCTCGTAAAATTTGTTATGCCATTGAGCAATATTCTTACAGGTTTGCAGCCACCAAAACAGCTTGTTAAACATTGATGTATCATTCCACATGCTTAGATTATAATTCAGATGTCTTGAAAGTAAATAAAGATATAAATAAGCATCCTAAAAATGCTGTAGTAAGCTTGTTATAGACTTTTATTTAAAGGTCTTCACATCATTTTTCTCGTTTGTTTGTCAGGTTGATTTCATGTTTAGTTCCTCAAAGCAAGTTAGTTCCCTAAAAAAACTATTGACGTCATATTCTTCATTCAGTAACCGTCAGACGATTTTTGCAAGTGCATCAATTCCGCAGCATAGGCATTTTCTTCATGATTGTATACAGCAGAAGTGGACCAAGGTATATGGAATTCTTTTTGGTTATTTCCAATTTGTGATGCAATTCAGCTATTAATTTCATTAGCTTGATAAAACTTTCCCTCTCTTCCTCTTGCAGAGTACTGTTGTTCATATTCATATTAACTCAACTCAGCCCATGCCATCATGTTTACTGCATAGATTTGTGGTAAATTTTATTGTCCATTCAGGAGTATTCTCAGCCATCCATCTCACTGCACATTGAATTTCTTTTTTCTAATAGTTTTGATTTTACTTGCTGAAGTATTATCGTTTGCTTGACTTTGACAGACATGTGAGAAGAACAAAAAGCATCAAACCCTCCTGACCTTGTTACTAACAGATATTCCTCAGTCTGCAATCATTTTTGTCAGTGAGCAGGTTTGTGTTGATTGAAGCTTTTAGATGAATGACCAAGTAAATAAGTAAAATGTTCTAACAGCTTTTTTCTATTGAAGCTTTTAGATTCTTCATGGTTTACTATTTGAAAGAAAATTGAGCTATACTACGCCAAATTATATTTGCTTGCTACGGATCATCAATGAATTGAATGCTCTAAGCCTCTAATCTAATTGATTATACTGCCCTTGAAAATTAAAAATAGAGAAAACGTTTTATCAACACTTTGAATCTTTGAATCTGTTATCTAGCGGTGGAAATGGCCATTTACACTTTTGACCATAATGATGTTTAGAGAAGTATTCTACATAACCTCTCTAAATTTAAAGGCGCCACTACTACTATGTAATTTAAACTATTTCTCTCAAATAGTAAACTATTCCCCTCTGCCCATGGACCTATAATGTAAATCTTTGTGTTGTTTCTTTCTTTATTGTTTATGCTTTTCTATTTATCTTTATTTTTCAATTCCATAACAATTGCAAAACTGGACATGCTACAAGCATGGCCGTGGCTGCATATCTAAGCCCTTAGGTTCACATTTTTAGGTCTGGAACTCTGGATTTCAGGAAAATCTAGTTCTAGGAAGCCAATCCGTTCAAATAGTTGCAAAAGAATTGAAGAATTGTAACTTGTCTGATTCTGTTACACTGGATTTGCAGTCAGAGAAGTCAAAGAAGGCCGGAAAGATTCCACCAACAACCTTGATGATTGATTTCTTGAAGGCCTCATATGGTGGTTGTTCTGACGTCATTCTTCTCGAGGAAGATGTGAATTACAATTTACGAGCTTCTTCCCTGTCGGTAAGCTTTGTATGCAATCTTTTGCCAACCATTAACCAAGTAGGGTGTTAACACTGCTGTGAGATCAGCTAACTGGGATGTGATATCTCGCCTGACAACCCTGTCCCAATTAGTTTTGTTAGAAATAATGGGCAGATTTACTTTGCCCTAATTTTTTATTTTTTTTATTAGGCTCTTATTGTCTATAAATATTTCCTCTATTAGTATTAGAAAATAACAAGAAACATCTATACTGTGGTTTTTCTCCCTATACTAGGATTTCCACATAGACCCTGCCCTGTTTTCATTCTTCGTCTCTATTTATCGAAAAGTTTAAATGAACATGGGATTAAAAAAATCTCATTCTTTACCGAACCACTGGATACCATTACTTTTCACCCACTATTTTCTGCCTAACAATGAATCAATCCAAACCACGGTATTCTTGACTTTTTGTCACAAGAATGTTAGACTCGGAAGAACTCGAGTTGGACTTTCGGTTGAAACTGAGTCATCAACACATTTTTTATTTGAATTGTTGATTGTTTTGAATGCAGGAACTGAGACAAGGAGGAAGTTATCTTATTGTAGCAACTGACATAGTGGCCAGGGGAATTGATTTGCCTGAAACAACCCATATATACAACTTCGATCTGCCTCGATGTGCTATTGACTATCTTCATCGAGCTGGACGGACAGGTAGGAAACCATTTTCTGAGGAGAAATGTGTGGTTACTAATCTTATAACATCAGAAGAGAGGTTTGTTTTGCAAAAATTTGAAAATGAACTGCTCTTTATCTGTGAGGAGGTGGTTGTTTAGACCATGAATCTCTAACTTCAACATTTATATGAGATCCCTGACCGGGGGTTCAAATTTCATGAGCTTATACAAAGACAAGATTTTAATTTAGCCA

mRNA sequence

ATGGCTGCAACCTTTCTTCCCACTACCAAATTCCCTCCTCCTTGGCTGCTCCTCTCATCTGAAAGGTCTTTTCCCGTTCATTTATCCTTTCAATTACCAAATTTTATCAATACCAATGGACCCATCTACTCCACCTCAAAATCTAGGCCTCTGCAAGCCCTTCTGAGCTCTTCTTCTTTAAAGAACGTAGCTGAATCCAATTTCGAGGCTTCCACTCTCCGGGAAATCTGCAATGGACACGTTCCCGAGCATATACTGCGCAGAACTGAGGAAATTGGATTTGTTGCCCCAACTGATGTGCAGAGGCAAGCTCTCCCAGTTTTGTTTTCGGGTCGGGATTGTGTGCTTCATGCGCAGACAGGTTCTGGGAAGACACTGACATATTTGCTGTTGATATTTTCTGTAATCAACGCTAAAAAATCAGCTGTTCAAGCATTGATTGTAGTACCCACACGGGAGTTAGGAATGCAAGTTACAAAAGTTGCTAGGATGTTAGCCGCCAAGCCTGCTGCATCTGAAGATGGGCTAAATTCTTATGTTGTCATGGCTCTTTTAGATGGAGGCTTGTTGAGAAGACACAAGACTTGGTTAAAGGCAGATCCCCCTGAAATACTGGTGGCGACTGTAGGAAGCTTGTGCCAAATGGTAGAGAGACAATTTCTTGACCTTGGTTCATTGAATGTGCTGGTAATTGATGAGGTTGATTTCATGTTTAGTTCCTCAAAGCAAGTTAGTTCCCTAAAAAAACTATTGACGTCATATTCTTCATTCAGTAACCGTCAGACGATTTTTGCAAGTGCATCAATTCCGCAGCATAGGCATTTTCTTCATGATTGTATACAGCAGAAGTGGACCAAGAGTACTGTTGTTCATATTCATATTAACTCAACTCAGCCCATGCCATCATGTTTACTGCATAGATTTGTGACATGTGAGAAGAACAAAAAGCATCAAACCCTCCTGACCTTGTTACTAACAGATATTCCTCAGTCTGCAATCATTTTTGTCAGTGAGCAGTCAGAGAAGTCAAAGAAGGCCGGAAAGATTCCACCAACAACCTTGATGATTGATTTCTTGAAGGCCTCATATGGTGGTTGTTCTGACGTCATTCTTCTCGAGGAAGATGTGAATTACAATTTACGAGCTTCTTCCCTGTCGGAACTGAGACAAGGAGGAAGTTATCTTATTGTAGCAACTGACATAGTGGCCAGGGGAATTGATTTGCCTGAAACAACCCATATATACAACTTCGATCTGCCTCGATGTGCTATTGACTATCTTCATCGAGCTGGACGGACAGGTAGGAAACCATTTTCTGAGGAGAAATGTGTGGTTACTAATCTTATAACATCAGAAGAGAGGTTTGTTTTGCAAAAATTTGAAAATGAACTGCTCTTTATCTGTGAGGAGGTGGTTGTTTAG

Coding sequence (CDS)

ATGGCTGCAACCTTTCTTCCCACTACCAAATTCCCTCCTCCTTGGCTGCTCCTCTCATCTGAAAGGTCTTTTCCCGTTCATTTATCCTTTCAATTACCAAATTTTATCAATACCAATGGACCCATCTACTCCACCTCAAAATCTAGGCCTCTGCAAGCCCTTCTGAGCTCTTCTTCTTTAAAGAACGTAGCTGAATCCAATTTCGAGGCTTCCACTCTCCGGGAAATCTGCAATGGACACGTTCCCGAGCATATACTGCGCAGAACTGAGGAAATTGGATTTGTTGCCCCAACTGATGTGCAGAGGCAAGCTCTCCCAGTTTTGTTTTCGGGTCGGGATTGTGTGCTTCATGCGCAGACAGGTTCTGGGAAGACACTGACATATTTGCTGTTGATATTTTCTGTAATCAACGCTAAAAAATCAGCTGTTCAAGCATTGATTGTAGTACCCACACGGGAGTTAGGAATGCAAGTTACAAAAGTTGCTAGGATGTTAGCCGCCAAGCCTGCTGCATCTGAAGATGGGCTAAATTCTTATGTTGTCATGGCTCTTTTAGATGGAGGCTTGTTGAGAAGACACAAGACTTGGTTAAAGGCAGATCCCCCTGAAATACTGGTGGCGACTGTAGGAAGCTTGTGCCAAATGGTAGAGAGACAATTTCTTGACCTTGGTTCATTGAATGTGCTGGTAATTGATGAGGTTGATTTCATGTTTAGTTCCTCAAAGCAAGTTAGTTCCCTAAAAAAACTATTGACGTCATATTCTTCATTCAGTAACCGTCAGACGATTTTTGCAAGTGCATCAATTCCGCAGCATAGGCATTTTCTTCATGATTGTATACAGCAGAAGTGGACCAAGAGTACTGTTGTTCATATTCATATTAACTCAACTCAGCCCATGCCATCATGTTTACTGCATAGATTTGTGACATGTGAGAAGAACAAAAAGCATCAAACCCTCCTGACCTTGTTACTAACAGATATTCCTCAGTCTGCAATCATTTTTGTCAGTGAGCAGTCAGAGAAGTCAAAGAAGGCCGGAAAGATTCCACCAACAACCTTGATGATTGATTTCTTGAAGGCCTCATATGGTGGTTGTTCTGACGTCATTCTTCTCGAGGAAGATGTGAATTACAATTTACGAGCTTCTTCCCTGTCGGAACTGAGACAAGGAGGAAGTTATCTTATTGTAGCAACTGACATAGTGGCCAGGGGAATTGATTTGCCTGAAACAACCCATATATACAACTTCGATCTGCCTCGATGTGCTATTGACTATCTTCATCGAGCTGGACGGACAGGTAGGAAACCATTTTCTGAGGAGAAATGTGTGGTTACTAATCTTATAACATCAGAAGAGAGGTTTGTTTTGCAAAAATTTGAAAATGAACTGCTCTTTATCTGTGAGGAGGTGGTTGTTTAG

Protein sequence

MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSLKNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQTGSGKTLTYLLLIFSVINAKKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEDGLNSYVVMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSSSKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHINSTQPMPSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFLKASYGGCSDVILLEEDVNYNLRASSLSELRQGGSYLIVATDIVARGIDLPETTHIYNFDLPRCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV*

Homology

[Close]

BLAST of CsaV3_3G013560 vs. NCBI nr
Match: XP_011650984.1 (DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X4 [Cucumis sativus] >KGN57008.1 hypothetical protein Csa_011037 [Cucumis sativus])

HSP 1 Score: 929.9 bits (2402), Expect = 9.0e-267
Identity = 473/473 (100.00%), Postives = 473/473 (100.00%), Query Frame = 0


Query: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60
           MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL
Sbjct: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60

Query: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120
           KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT
Sbjct: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120

Query: 121 GSGKTLTYLLLIFSVINAKKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEDGLNSYV 180
           GSGKTLTYLLLIFSVINAKKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEDGLNSYV
Sbjct: 121 GSGKTLTYLLLIFSVINAKKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEDGLNSYV 180

Query: 181 VMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS 240
           VMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS
Sbjct: 181 VMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS 240

Query: 241 SKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHINSTQPM 300
           SKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHINSTQPM
Sbjct: 241 SKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHINSTQPM 300

Query: 301 PSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFLK 360
           PSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFLK
Sbjct: 301 PSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFLK 360

Query: 361 ASYGGCSDVILLEEDVNYNLRASSLSELRQGGSYLIVATDIVARGIDLPETTHIYNFDLP 420
           ASYGGCSDVILLEEDVNYNLRASSLSELRQGGSYLIVATDIVARGIDLPETTHIYNFDLP
Sbjct: 361 ASYGGCSDVILLEEDVNYNLRASSLSELRQGGSYLIVATDIVARGIDLPETTHIYNFDLP 420

Query: 421 RCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV 474
           RCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV
Sbjct: 421 RCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV 473

[Close]

BLAST of CsaV3_3G013560 vs. NCBI nr
Match: XP_031738178.1 (DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X3 [Cucumis sativus])

HSP 1 Score: 923.7 bits (2386), Expect = 6.4e-265
Identity = 473/478 (98.95%), Postives = 473/478 (98.95%), Query Frame = 0


Query: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60
           MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL
Sbjct: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60

Query: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120
           KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT
Sbjct: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120

Query: 121 GSGKTLTYLLLIFSVINAKKSAVQALIVVPTRELGMQ-----VTKVARMLAAKPAASEDG 180
           GSGKTLTYLLLIFSVINAKKSAVQALIVVPTRELGMQ     VTKVARMLAAKPAASEDG
Sbjct: 121 GSGKTLTYLLLIFSVINAKKSAVQALIVVPTRELGMQVRLNSVTKVARMLAAKPAASEDG 180

Query: 181 LNSYVVMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVD 240
           LNSYVVMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVD
Sbjct: 181 LNSYVVMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVD 240

Query: 241 FMFSSSKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHIN 300
           FMFSSSKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHIN
Sbjct: 241 FMFSSSKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHIN 300

Query: 301 STQPMPSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLM 360
           STQPMPSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLM
Sbjct: 301 STQPMPSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLM 360

Query: 361 IDFLKASYGGCSDVILLEEDVNYNLRASSLSELRQGGSYLIVATDIVARGIDLPETTHIY 420
           IDFLKASYGGCSDVILLEEDVNYNLRASSLSELRQGGSYLIVATDIVARGIDLPETTHIY
Sbjct: 361 IDFLKASYGGCSDVILLEEDVNYNLRASSLSELRQGGSYLIVATDIVARGIDLPETTHIY 420

Query: 421 NFDLPRCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV 474
           NFDLPRCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV
Sbjct: 421 NFDLPRCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV 478

[Close]

BLAST of CsaV3_3G013560 vs. NCBI nr
Match: XP_031738177.1 (DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 913.7 bits (2360), Expect = 6.6e-262
Identity = 473/504 (93.85%), Postives = 473/504 (93.85%), Query Frame = 0


Query: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60
           MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL
Sbjct: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60

Query: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120
           KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT
Sbjct: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120

Query: 121 GSGKTLTYLLLIFSVINAKKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEDGLNSYV 180
           GSGKTLTYLLLIFSVINAKKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEDGLNSYV
Sbjct: 121 GSGKTLTYLLLIFSVINAKKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEDGLNSYV 180

Query: 181 VMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS 240
           VMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS
Sbjct: 181 VMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS 240

Query: 241 SKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHINSTQPM 300
           SKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHINSTQPM
Sbjct: 241 SKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHINSTQPM 300

Query: 301 PSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSE---------------------- 360
           PSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSE                      
Sbjct: 301 PSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQENLVLGSQSVQIVAKELKNCN 360

Query: 361 ---------QSEKSKKAGKIPPTTLMIDFLKASYGGCSDVILLEEDVNYNLRASSLSELR 420
                    QSEKSKKAGKIPPTTLMIDFLKASYGGCSDVILLEEDVNYNLRASSLSELR
Sbjct: 361 LSDSVTLDLQSEKSKKAGKIPPTTLMIDFLKASYGGCSDVILLEEDVNYNLRASSLSELR 420

Query: 421 QGGSYLIVATDIVARGIDLPETTHIYNFDLPRCAIDYLHRAGRTGRKPFSEEKCVVTNLI 474
           QGGSYLIVATDIVARGIDLPETTHIYNFDLPRCAIDYLHRAGRTGRKPFSEEKCVVTNLI
Sbjct: 421 QGGSYLIVATDIVARGIDLPETTHIYNFDLPRCAIDYLHRAGRTGRKPFSEEKCVVTNLI 480

[Close]

BLAST of CsaV3_3G013560 vs. NCBI nr
Match: XP_008438702.1 (PREDICTED: DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 908.7 bits (2347), Expect = 2.1e-260
Identity = 461/473 (97.46%), Postives = 465/473 (98.31%), Query Frame = 0


Query: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60
           MAATFLPTTKFPPPWLLLSSER FPVHLSFQLPNFINTNGPIYSTSK RPLQAL+SSSSL
Sbjct: 1   MAATFLPTTKFPPPWLLLSSERPFPVHLSFQLPNFINTNGPIYSTSKFRPLQALMSSSSL 60

Query: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120
           KNVAESNFE STLREICNG VPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT
Sbjct: 61  KNVAESNFEGSTLREICNGRVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120

Query: 121 GSGKTLTYLLLIFSVINAKKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEDGLNSYV 180
           GSGKTLTYLLLIFSVINA KSAVQALIVVPTRELGMQVTKVARMLAAKPAASEDGLNSYV
Sbjct: 121 GSGKTLTYLLLIFSVINAHKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEDGLNSYV 180

Query: 181 VMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS 240
           VMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS
Sbjct: 181 VMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS 240

Query: 241 SKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHINSTQPM 300
           SKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFL DCIQQKWTK+TV+HIHINSTQPM
Sbjct: 241 SKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLQDCIQQKWTKNTVIHIHINSTQPM 300

Query: 301 PSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFLK 360
           PSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFLK
Sbjct: 301 PSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFLK 360

Query: 361 ASYGGCSDVILLEEDVNYNLRASSLSELRQGGSYLIVATDIVARGIDLPETTHIYNFDLP 420
           ASYGGCSDVILLEEDVNYNLRASSLSE+RQGG YLIVATDIVARGIDLPETTHIYNFDLP
Sbjct: 361 ASYGGCSDVILLEEDVNYNLRASSLSEVRQGGCYLIVATDIVARGIDLPETTHIYNFDLP 420

Query: 421 RCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV 474
           RCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEV V
Sbjct: 421 RCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVAV 473

[Close]

BLAST of CsaV3_3G013560 vs. NCBI nr
Match: XP_031738176.1 (DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 907.5 bits (2344), Expect = 4.8e-260
Identity = 473/509 (92.93%), Postives = 473/509 (92.93%), Query Frame = 0


Query: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60
           MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL
Sbjct: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60

Query: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120
           KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT
Sbjct: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120

Query: 121 GSGKTLTYLLLIFSVINAKKSAVQALIVVPTRELGMQ-----VTKVARMLAAKPAASEDG 180
           GSGKTLTYLLLIFSVINAKKSAVQALIVVPTRELGMQ     VTKVARMLAAKPAASEDG
Sbjct: 121 GSGKTLTYLLLIFSVINAKKSAVQALIVVPTRELGMQVRLNSVTKVARMLAAKPAASEDG 180

Query: 181 LNSYVVMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVD 240
           LNSYVVMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVD
Sbjct: 181 LNSYVVMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVD 240

Query: 241 FMFSSSKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHIN 300
           FMFSSSKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHIN
Sbjct: 241 FMFSSSKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHIN 300

Query: 301 STQPMPSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSE----------------- 360
           STQPMPSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSE                 
Sbjct: 301 STQPMPSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQENLVLGSQSVQIVAKE 360

Query: 361 --------------QSEKSKKAGKIPPTTLMIDFLKASYGGCSDVILLEEDVNYNLRASS 420
                         QSEKSKKAGKIPPTTLMIDFLKASYGGCSDVILLEEDVNYNLRASS
Sbjct: 361 LKNCNLSDSVTLDLQSEKSKKAGKIPPTTLMIDFLKASYGGCSDVILLEEDVNYNLRASS 420

Query: 421 LSELRQGGSYLIVATDIVARGIDLPETTHIYNFDLPRCAIDYLHRAGRTGRKPFSEEKCV 474
           LSELRQGGSYLIVATDIVARGIDLPETTHIYNFDLPRCAIDYLHRAGRTGRKPFSEEKCV
Sbjct: 421 LSELRQGGSYLIVATDIVARGIDLPETTHIYNFDLPRCAIDYLHRAGRTGRKPFSEEKCV 480

[Close]

BLAST of CsaV3_3G013560 vs. ExPASy Swiss-Prot
Match: Q3E9C3 (DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RH58 PE=2 SV=1)

HSP 1 Score: 591.7 bits (1524), Expect = 7.6e-168
Identity = 297/444 (66.89%), Postives = 359/444 (80.86%), Query Frame = 0


Query: 43  YSTSKSRPLQALLSSS--SLKNVAESNFEAS-----------TLREICNGHVPEHILRRT 102
           +STS  R L++  SS   +L+ VAE++ E             TLR+IC G VPEHIL R 
Sbjct: 32  HSTSTRRALKSSPSSRIINLQAVAETSSEIESNSVTETTVPLTLRQICQGFVPEHILHRM 91

Query: 103 EEIGFVAPTDVQRQALPVLFSGRDCVLHAQTGSGKTLTYLLLIFSVINAKKSAVQALIVV 162
           EEIGFV PTD+QR+ALP LF+GRDC+LHAQTGSGKTLTYLLLIFS+IN ++S+VQA+IVV
Sbjct: 92  EEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVV 151

Query: 163 PTRELGMQVTKVARMLAAKPAASEDGLNSYVVMALLDGGLLRRHKTWLKADPPEILVATV 222
           PTRELGMQVTKVARMLAAK   SE  +    VMALLDGG LRRHK+WLKA+PP ILVATV
Sbjct: 152 PTRELGMQVTKVARMLAAK---SEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAILVATV 211

Query: 223 GSLCQMVERQFLDLGSLNVLVIDEVDFMFSSSKQVSSLKKLLTSYSSFSNRQTIFASASI 282
            SLC M+E+    + S+ VLV+DEVDF+F SSKQV S++KLLTS+SS   RQT+FASASI
Sbjct: 212 ASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSSCDKRQTVFASASI 271

Query: 283 PQHRHFLHDCIQQKWTKSTVVHIHINSTQPMPSCLLHRFVTCEKNKKHQTLLTLLLTDIP 342
           PQH+HF+HDCIQQKWTK  VVH+H+++  PMP CLLHRFV CEK  KHQ LL LL +D P
Sbjct: 272 PQHKHFVHDCIQQKWTKRDVVHVHVSAIMPMPLCLLHRFVMCEKTNKHQVLLALLESDAP 331

Query: 343 QSAIIFVSEQSEKSKKAGKIPPTTLMIDFLKASYGGCSDVILLEEDVNYNLRASSLSELR 402
           +SAIIFV EQSEKSKKAG  P TTL+++FLK SY G  +++LLE D+N+N RA+SL+E+R
Sbjct: 332 ESAIIFVGEQSEKSKKAGNDPSTTLLMEFLKTSYKGSLEILLLEGDMNFNSRAASLTEIR 391

Query: 403 QGGSYLIVATDIVARGIDLPETTHIYNFDLPRCAIDYLHRAGRTGRKPFSEEKCVVTNLI 462
           QGG +L+V+TDI ARGIDLPETTHI+NFDLP+   DYLHRAGR GRKPFS+ KC+V NLI
Sbjct: 392 QGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRAGRAGRKPFSDRKCIVANLI 451

Query: 463 TSEERFVLQKFENELLFICEEVVV 474
           TSEERFVLQ++ENEL+F CEE+++
Sbjct: 452 TSEERFVLQRYENELMFSCEEMML 472

[Close]

BLAST of CsaV3_3G013560 vs. ExPASy Swiss-Prot
Match: Q0JFN7 (DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0970600 PE=2 SV=2)

HSP 1 Score: 530.8 bits (1366), Expect = 1.6e-149
Identity = 259/404 (64.11%), Postives = 329/404 (81.44%), Query Frame = 0


Query: 70  ASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQTGSGKTLTYL 129
           A+TLRE+C G VPEH+L+R EE+G+V PT+VQ Q+LPVL SG+DC+LHAQTGSGKTL YL
Sbjct: 37  AATLREVCAGRVPEHVLQRAEEVGYVVPTEVQEQSLPVLLSGQDCILHAQTGSGKTLAYL 96

Query: 130 LLIFSVINAKKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEDGLNSYVVMALLDGGL 189
           L +FS I+  +S+VQAL+VVPTRELGMQVTKVAR+LAAK         +  VMALLDGG+
Sbjct: 97  LSVFSAIDFGRSSVQALVVVPTRELGMQVTKVARILAAK---------ACTVMALLDGGM 156

Query: 190 LRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSSSKQVSSLKK 249
           LRR K+W+KA+PP I+VATV SLCQM+E++   L S+ VLVIDEVDF+F SSKQVSSL+K
Sbjct: 157 LRRQKSWVKAEPPAIIVATVASLCQMIEKRAFSLQSMRVLVIDEVDFIFGSSKQVSSLRK 216

Query: 250 LLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHINSTQPMPSCLLHRFV 309
           +LTSYS+ S+RQTIFASASIPQH  F+HDC+Q KWTK+ VVH+H+N  QPMPS L H++ 
Sbjct: 217 ILTSYSAASSRQTIFASASIPQHNRFVHDCVQHKWTKTDVVHVHVNPVQPMPSHLQHKYA 276

Query: 310 TCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFLKASYGGCSDV 369
            C K ++   LL+LL  D P+S IIFV+EQSEKSKKAG  P TT++++FL+ +Y G  +V
Sbjct: 277 ICSKKERLHVLLSLLEKDAPKSGIIFVAEQSEKSKKAGHPPSTTVVVEFLRTTYMGSLEV 336

Query: 370 ILLEEDVNYNLRASSLSELRQGGSYLIVATDIVARGIDLPETTHIYNFDLPRCAIDYLHR 429
           +LLEED+N+N RA+S +E++ G  +L+V+TDI +RG DLP+T+HIYNFDLP+ AIDYLHR
Sbjct: 337 LLLEEDMNFNARATSFTEVK-GKGFLLVSTDIASRGFDLPQTSHIYNFDLPKTAIDYLHR 396

Query: 430 AGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV 474
           AGRTGR+PFS+  C VT LIT +E FVLQ+F+NEL F CEE+ V
Sbjct: 397 AGRTGREPFSKLACSVTTLITEDEHFVLQRFQNELKFHCEELPV 430

[Close]

BLAST of CsaV3_3G013560 vs. ExPASy Swiss-Prot
Match: Q8Y7M8 (ATP-dependent RNA helicase DbpA OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) OX=169963 GN=dbpA PE=2 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.5e-33
Identity = 114/364 (31.32%), Postives = 183/364 (50.27%), Query Frame = 0


Query: 78  NGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQTGSGKTLTYLLLIFSVIN 137
           N  + E I R   E+G+   T VQ+  +PV  +G D V  +QTGSGKT  + + I   + 
Sbjct: 3   NLKLSEEIKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQVE 62

Query: 138 AKKSAVQALIVVPTRELGMQV----TKVARMLAAKPAASEDGLNSYVVMALLDGGLLRRH 197
            +++  QALI+VPTREL MQV    T + R    K A            A+       + 
Sbjct: 63  WEENKPQALIIVPTRELAMQVKTECTNIGRFKRVKAA------------AIYGQSPFAKQ 122

Query: 198 KTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSSSKQVSSLKKLLTS 257
           K  L +    I+V T G L   +E+  L++  +  LV+DEVD M S    +  ++ +L+ 
Sbjct: 123 KLEL-SQKNHIVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMG-FIDQVEDILSR 182

Query: 258 YSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHINSTQPMPSCLLHRFVTCEK 317
                 RQ +F SA++P+    + D I++      V+ +    T P    + H  V  + 
Sbjct: 183 LP--KQRQNLFFSATMPEE---MQDLIKRYQDNPMVIEMASEKTNP----IFH--VEMQT 242

Query: 318 NKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFLKAS--YGGCSDVIL 377
           + K +TL  +L+T+ P SAIIF + +++       +   T ++D +KAS  +GG     L
Sbjct: 243 DNKEKTLKDVLITENPDSAIIFCNTKNQ-------VDELTDLLD-VKASKIHGG-----L 302

Query: 378 LEEDVNYNLRASSLSELRQGGSYLIVATDIVARGIDLPETTHIYNFDLPRCAIDYLHRAG 436
            +ED     R  ++ + + G S  ++ATD+  RGID+   + + N+DLP    +Y+HR G
Sbjct: 303 RQED-----RFRAMDDFKSGKSRFLIATDVAGRGIDVDNVSLVINYDLPIEKENYVHRIG 323

[Close]

BLAST of CsaV3_3G013560 vs. ExPASy Swiss-Prot
Match: Q6H874 (DEAD-box ATP-dependent RNA helicase 47A OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0636300 PE=2 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.6e-32
Identity = 133/481 (27.65%), Postives = 211/481 (43.87%), Query Frame = 0


Query: 41  PIYSTSKSRPLQALLSSSSL----KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVA 100
           P  S+  ++P+++ L  S++      + ES F A +  E+    +P  ++ R  + G  A
Sbjct: 97  PKVSSFNAKPVKSALPKSAVLKKTLKIDESLFSAKSFEEL---GLPPLLIDRLNKEGLTA 156

Query: 101 PTDVQRQALPVLFSGRDCVLHAQTGSGKTLTYLLLIFSVI-----------NAKKSAVQA 160
           PT+VQ  A+P++    D V+ + TGSGKTL YLL I S I           + K+S V+A
Sbjct: 157 PTEVQSAAIPIISQKHDAVIQSYTGSGKTLAYLLPILSEIGPLKRPTEQDSSDKRSGVEA 216

Query: 161 LIVVPTRELGMQVTK-VARMLAAKPAASEDGLNSYVVMALLDGGLLRRHKTWLKADPPEI 220
           +IV P+RELGMQ+ + V ++L           +  +V  L+ G    R +  LK + P I
Sbjct: 217 VIVAPSRELGMQIVREVEKILGPN--------DKRLVQQLVGGANRSRQEEALKKNKPII 276

Query: 221 LVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFS--------------SSKQVSSLKKL 280
           +V T G + ++     L   S   LV+DEVD + S                K  +S + +
Sbjct: 277 VVGTPGRISEISAAGKLHTHSCRFLVLDEVDQLLSFNYREDMHRILEHVGRKSGTSSRDI 336

Query: 281 LTSYSSFSNRQTIFASASIP-----QHRHFLHDCIQQK-----------WTKSTVVHIHI 340
           L   +  S RQTI  SA+IP       R + HD +  +             +  +     
Sbjct: 337 LGPLARRSERQTILVSATIPFSVIRAARSWGHDPVLVRAMSVVPLESITVPRPVLSQPDA 396

Query: 341 NSTQP-----------MPSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKS 400
           NS  P           +P  L H + T +   K  TL   +     Q+ I F++      
Sbjct: 397 NSNSPSNSVNQAAVDSLPPSLEHYYCTSKAQHKVDTLRRCIHALEAQTVIAFMNNTKPLK 456

Query: 401 KKAGKIPPTTLMIDFLKASYGGCSDVILLEEDVNYNLRASSLSELRQGGSYLIVATDIVA 460
               K+         +KA+         L  D+    R++ L + + G   ++V  ++ A
Sbjct: 457 DVVFKLEARG-----MKATE--------LHGDLGKLARSTVLKKFKDGEFRVLVTNELSA 516

Query: 461 RGIDLPETTHIYNFDLPRCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENE 465
           RG+D+PE   + N DLP  +  Y HRAGRTGR      K  V  +    E FV++K   +
Sbjct: 517 RGLDVPECDLVINLDLPTDSTHYAHRAGRTGR---LGRKGTVVTICEETETFVVRKMRKQ 550

[Close]

BLAST of CsaV3_3G013560 vs. ExPASy Swiss-Prot
Match: Q81DF9 (DEAD-box ATP-dependent RNA helicase CshE OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NRRL B-3711) OX=226900 GN=cshE PE=2 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.7e-32
Identity = 108/353 (30.59%), Postives = 176/353 (49.86%), Query Frame = 0


Query: 84  HILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQTGSGKTLTYLLLIFSVINAKKSAV 143
           H LR   E G    T +Q +A+PV+ SG+D +  A+TG+GKTL ++L I   I+ + S V
Sbjct: 18  HTLR---ENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPECSDV 77

Query: 144 QALIVVPTRELGMQV-TKVARMLAAKPAASEDGLNSYVVMALLDGGLLRRHKTWLKADPP 203
           QALIV PTREL +Q+ T++ +ML  +     + +N   V+A+  G  + +    LK +  
Sbjct: 78  QALIVAPTRELALQITTEIKKMLVQR-----EDIN---VLAIYGGQDVAQQLRKLKGN-T 137

Query: 204 EILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSSSKQVSSLKKLLTSYSSFSNRQT 263
            I+VAT G L   + R+ +DL +L+ +V+DE D M      +  ++ +L    +  ++QT
Sbjct: 138 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFG-FLYDIEDILD--ETPGSKQT 197

Query: 264 IFASASIPQHRHFLHDCIQQKWTKSTVVHIHINSTQPMPSCLLHRFVTCEKNKKHQTLLT 323
           +  SA++P+    L      K        I + S +     +  R +      K   L  
Sbjct: 198 MLFSATMPKDIKKL-----AKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRF 257

Query: 324 LLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFLKASYGGCSDVILLEEDVNYNLRA 383
           ++  D P  A+IF   +   SK          + D LK     C++   L  D+    R 
Sbjct: 258 VMDRDQPFLAVIFCRTKVRASK----------LYDNLKGLGYNCAE---LHGDIPQAKRE 317

Query: 384 SSLSELRQGGSYLIVATDIVARGIDLPETTHIYNFDLPRCAIDYLHRAGRTGR 436
             +   R+     ++ATD+ ARG+D+   TH++N+D+P     Y+HR GRTGR
Sbjct: 318 RVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGR 337

[Close]

BLAST of CsaV3_3G013560 vs. ExPASy TrEMBL
Match: A0A0A0L5M9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G149880 PE=4 SV=1)

HSP 1 Score: 929.9 bits (2402), Expect = 4.3e-267
Identity = 473/473 (100.00%), Postives = 473/473 (100.00%), Query Frame = 0


Query: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60
           MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL
Sbjct: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60

Query: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120
           KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT
Sbjct: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120

Query: 121 GSGKTLTYLLLIFSVINAKKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEDGLNSYV 180
           GSGKTLTYLLLIFSVINAKKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEDGLNSYV
Sbjct: 121 GSGKTLTYLLLIFSVINAKKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEDGLNSYV 180

Query: 181 VMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS 240
           VMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS
Sbjct: 181 VMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS 240

Query: 241 SKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHINSTQPM 300
           SKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHINSTQPM
Sbjct: 241 SKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHINSTQPM 300

Query: 301 PSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFLK 360
           PSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFLK
Sbjct: 301 PSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFLK 360

Query: 361 ASYGGCSDVILLEEDVNYNLRASSLSELRQGGSYLIVATDIVARGIDLPETTHIYNFDLP 420
           ASYGGCSDVILLEEDVNYNLRASSLSELRQGGSYLIVATDIVARGIDLPETTHIYNFDLP
Sbjct: 361 ASYGGCSDVILLEEDVNYNLRASSLSELRQGGSYLIVATDIVARGIDLPETTHIYNFDLP 420

Query: 421 RCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV 474
           RCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV
Sbjct: 421 RCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV 473

[Close]

BLAST of CsaV3_3G013560 vs. ExPASy TrEMBL
Match: A0A1S3AX19 (DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483729 PE=4 SV=1)

HSP 1 Score: 908.7 bits (2347), Expect = 1.0e-260
Identity = 461/473 (97.46%), Postives = 465/473 (98.31%), Query Frame = 0


Query: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60
           MAATFLPTTKFPPPWLLLSSER FPVHLSFQLPNFINTNGPIYSTSK RPLQAL+SSSSL
Sbjct: 1   MAATFLPTTKFPPPWLLLSSERPFPVHLSFQLPNFINTNGPIYSTSKFRPLQALMSSSSL 60

Query: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120
           KNVAESNFE STLREICNG VPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT
Sbjct: 61  KNVAESNFEGSTLREICNGRVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120

Query: 121 GSGKTLTYLLLIFSVINAKKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEDGLNSYV 180
           GSGKTLTYLLLIFSVINA KSAVQALIVVPTRELGMQVTKVARMLAAKPAASEDGLNSYV
Sbjct: 121 GSGKTLTYLLLIFSVINAHKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEDGLNSYV 180

Query: 181 VMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS 240
           VMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS
Sbjct: 181 VMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS 240

Query: 241 SKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHINSTQPM 300
           SKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFL DCIQQKWTK+TV+HIHINSTQPM
Sbjct: 241 SKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLQDCIQQKWTKNTVIHIHINSTQPM 300

Query: 301 PSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFLK 360
           PSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFLK
Sbjct: 301 PSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFLK 360

Query: 361 ASYGGCSDVILLEEDVNYNLRASSLSELRQGGSYLIVATDIVARGIDLPETTHIYNFDLP 420
           ASYGGCSDVILLEEDVNYNLRASSLSE+RQGG YLIVATDIVARGIDLPETTHIYNFDLP
Sbjct: 361 ASYGGCSDVILLEEDVNYNLRASSLSEVRQGGCYLIVATDIVARGIDLPETTHIYNFDLP 420

Query: 421 RCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV 474
           RCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEV V
Sbjct: 421 RCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVAV 473

[Close]

BLAST of CsaV3_3G013560 vs. ExPASy TrEMBL
Match: A0A6J1C9C7 (DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009507 PE=4 SV=1)

HSP 1 Score: 811.2 bits (2094), Expect = 2.2e-231
Identity = 412/473 (87.10%), Postives = 434/473 (91.75%), Query Frame = 0


Query: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60
           MAAT LPTTK PPPWLLLSSER  PV+ S QLP F N+NGP+ STSK RP  A  SS SL
Sbjct: 1   MAATLLPTTKSPPPWLLLSSERLHPVYFSVQLPKFNNSNGPLCSTSKFRPPLAFPSSFSL 60

Query: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120
            NV +SNFEASTLREIC+GHVP+HILRR EEIGFVAPTDVQRQALPVLFSGRDCVLHAQT
Sbjct: 61  NNVVDSNFEASTLREICDGHVPDHILRRAEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120

Query: 121 GSGKTLTYLLLIFSVINAKKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEDGLNSYV 180
           GSGKTLTYLLLIFS+INA++SAVQAL+VVPTRELGMQVTKVARMLAAK AASE G  SYV
Sbjct: 121 GSGKTLTYLLLIFSIINAQRSAVQALVVVPTRELGMQVTKVARMLAAKSAASELGQKSYV 180

Query: 181 VMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS 240
           VMALLDGGLLRRHK WLKADPP ILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS
Sbjct: 181 VMALLDGGLLRRHKNWLKADPPAILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS 240

Query: 241 SKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHINSTQPM 300
           SKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTK+ V+HIH+N  QPM
Sbjct: 241 SKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKNDVMHIHVNPMQPM 300

Query: 301 PSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFLK 360
           PSCLLHRFV C+KNKKHQT  +LLLTD PQSAIIFVSEQSEKSKKAG I PTT+MIDFLK
Sbjct: 301 PSCLLHRFVICDKNKKHQTFRSLLLTDEPQSAIIFVSEQSEKSKKAGNISPTTMMIDFLK 360

Query: 361 ASYGGCSDVILLEEDVNYNLRASSLSELRQGGSYLIVATDIVARGIDLPETTHIYNFDLP 420
            SYGG SD+ILLEED+NYNLRASSLSE+RQGG YLIVATDIVARGIDLPETTHIYNFDLP
Sbjct: 361 TSYGGYSDIILLEEDMNYNLRASSLSEVRQGGGYLIVATDIVARGIDLPETTHIYNFDLP 420

Query: 421 RCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV 474
           R AIDYLHRAGRTGRKPFS+EKCVV NLITS+ERFVLQKFENELLF CEE+VV
Sbjct: 421 RTAIDYLHRAGRTGRKPFSKEKCVVNNLITSQERFVLQKFENELLFFCEELVV 473

[Close]

BLAST of CsaV3_3G013560 vs. ExPASy TrEMBL
Match: A0A5D3D0Z8 (DEAD-box ATP-dependent RNA helicase 58 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00220 PE=4 SV=1)

HSP 1 Score: 792.3 bits (2045), Expect = 1.1e-225
Identity = 418/473 (88.37%), Postives = 424/473 (89.64%), Query Frame = 0


Query: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60
           MAATFLPTTKFPPPWLLLSSER FPVHLSFQLPNFINTNGPIYSTSK RPLQAL+SSSSL
Sbjct: 1   MAATFLPTTKFPPPWLLLSSERPFPVHLSFQLPNFINTNGPIYSTSKFRPLQALMSSSSL 60

Query: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120
           KNVAESNFE ++                    GFV             F    C   A  
Sbjct: 61  KNVAESNFEEAS------------------SPGFV-------------FGSGLCASCA-- 120

Query: 121 GSGKTLTYLLLIFSVINAKKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEDGLNSYV 180
           GSGKTLTYLLLIFSVINA KSAVQALIVVPTRELGMQVTKVARMLAAKPAASEDGLNSYV
Sbjct: 121 GSGKTLTYLLLIFSVINAHKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEDGLNSYV 180

Query: 181 VMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS 240
           VMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS
Sbjct: 181 VMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS 240

Query: 241 SKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHINSTQPM 300
           SKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFL DCIQQKWTK+TV+HIHINSTQPM
Sbjct: 241 SKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLQDCIQQKWTKNTVIHIHINSTQPM 300

Query: 301 PSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFLK 360
           PSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFLK
Sbjct: 301 PSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFLK 360

Query: 361 ASYGGCSDVILLEEDVNYNLRASSLSELRQGGSYLIVATDIVARGIDLPETTHIYNFDLP 420
           ASYGGCSDVILLEEDVNYNLRASSLSE+RQGG YLIVATDIVARGIDLPETTHIYNFDLP
Sbjct: 361 ASYGGCSDVILLEEDVNYNLRASSLSEVRQGGCYLIVATDIVARGIDLPETTHIYNFDLP 420

Query: 421 RCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV 474
           RCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEV V
Sbjct: 421 RCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVAV 440

[Close]

BLAST of CsaV3_3G013560 vs. ExPASy TrEMBL
Match: A0A6J1EZV7 (DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111441060 PE=4 SV=1)

HSP 1 Score: 781.2 bits (2016), Expect = 2.5e-222
Identity = 394/474 (83.12%), Postives = 430/474 (90.72%), Query Frame = 0


Query: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60
           MAAT LP+TK PPPWL +SSER +P++    LP  IN NGPI ST K RP +A +SSSSL
Sbjct: 84  MAATLLPSTKIPPPWLPVSSERRYPIY----LPKLINNNGPICSTPKFRPPKAFMSSSSL 143

Query: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120
            N  +SNFEAS+LREICNG+VP+HIL R EEIGFVAPT VQRQALPVLFSGRDCVLHAQT
Sbjct: 144 NNAVDSNFEASSLREICNGYVPDHILDRAEEIGFVAPTGVQRQALPVLFSGRDCVLHAQT 203

Query: 121 GSGKTLTYLLLIFSVINAKKSAVQALIVVPTRELGMQVTKVARMLAAKPA-ASEDGLNSY 180
           GSGKTLTYLLLIFSVINA+KSAVQALIVVPTRELG+QVTKVARMLAAKPA A E G  SY
Sbjct: 204 GSGKTLTYLLLIFSVINAQKSAVQALIVVPTRELGIQVTKVARMLAAKPATADEVGQKSY 263

Query: 181 VVMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFS 240
           VVMALLDGGLLRRHKTWLKADPP ILVATVGSLCQMVER+FLDL SL VL+IDEVDFMFS
Sbjct: 264 VVMALLDGGLLRRHKTWLKADPPCILVATVGSLCQMVERRFLDLASLKVLIIDEVDFMFS 323

Query: 241 SSKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHINSTQP 300
           SSKQVSSLKK+LTSYS FSNRQT+FASASIPQHRHFL +CIQQKWTK+ ++H+HIN+ QP
Sbjct: 324 SSKQVSSLKKILTSYSMFSNRQTVFASASIPQHRHFLQECIQQKWTKNNIIHVHINAVQP 383

Query: 301 MPSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFL 360
           MPSCLLHRFV C+KNKKHQT L++LLTD PQSAIIFVSEQSE+SKKAGKIPP TLMIDFL
Sbjct: 384 MPSCLLHRFVMCDKNKKHQTFLSVLLTDKPQSAIIFVSEQSERSKKAGKIPPATLMIDFL 443

Query: 361 KASYGGCSDVILLEEDVNYNLRASSLSELRQGGSYLIVATDIVARGIDLPETTHIYNFDL 420
           K SY GCSDV+LL+EDVN+N RA+SLSE+RQGGSYLIVATD+VARGIDLPETTHIYNFDL
Sbjct: 444 KTSYDGCSDVVLLDEDVNFNSRAASLSEVRQGGSYLIVATDLVARGIDLPETTHIYNFDL 503

Query: 421 PRCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV 474
           PR AIDYLHRAGRTGRKPFSEEKC+VTNLITS ERFVLQKFENELLF C+E+VV
Sbjct: 504 PRTAIDYLHRAGRTGRKPFSEEKCMVTNLITSVERFVLQKFENELLFTCDELVV 553

[Close]

BLAST of CsaV3_3G013560 vs. TAIR 10
Match: AT5G19210.2 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 591.7 bits (1524), Expect = 5.4e-169
Identity = 297/444 (66.89%), Postives = 359/444 (80.86%), Query Frame = 0


Query: 43  YSTSKSRPLQALLSSS--SLKNVAESNFEAS-----------TLREICNGHVPEHILRRT 102
           +STS  R L++  SS   +L+ VAE++ E             TLR+IC G VPEHIL R 
Sbjct: 32  HSTSTRRALKSSPSSRIINLQAVAETSSEIESNSVTETTVPLTLRQICQGFVPEHILHRM 91

Query: 103 EEIGFVAPTDVQRQALPVLFSGRDCVLHAQTGSGKTLTYLLLIFSVINAKKSAVQALIVV 162
           EEIGFV PTD+QR+ALP LF+GRDC+LHAQTGSGKTLTYLLLIFS+IN ++S+VQA+IVV
Sbjct: 92  EEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVV 151

Query: 163 PTRELGMQVTKVARMLAAKPAASEDGLNSYVVMALLDGGLLRRHKTWLKADPPEILVATV 222
           PTRELGMQVTKVARMLAAK   SE  +    VMALLDGG LRRHK+WLKA+PP ILVATV
Sbjct: 152 PTRELGMQVTKVARMLAAK---SEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAILVATV 211

Query: 223 GSLCQMVERQFLDLGSLNVLVIDEVDFMFSSSKQVSSLKKLLTSYSSFSNRQTIFASASI 282
            SLC M+E+    + S+ VLV+DEVDF+F SSKQV S++KLLTS+SS   RQT+FASASI
Sbjct: 212 ASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSSCDKRQTVFASASI 271

Query: 283 PQHRHFLHDCIQQKWTKSTVVHIHINSTQPMPSCLLHRFVTCEKNKKHQTLLTLLLTDIP 342
           PQH+HF+HDCIQQKWTK  VVH+H+++  PMP CLLHRFV CEK  KHQ LL LL +D P
Sbjct: 272 PQHKHFVHDCIQQKWTKRDVVHVHVSAIMPMPLCLLHRFVMCEKTNKHQVLLALLESDAP 331

Query: 343 QSAIIFVSEQSEKSKKAGKIPPTTLMIDFLKASYGGCSDVILLEEDVNYNLRASSLSELR 402
           +SAIIFV EQSEKSKKAG  P TTL+++FLK SY G  +++LLE D+N+N RA+SL+E+R
Sbjct: 332 ESAIIFVGEQSEKSKKAGNDPSTTLLMEFLKTSYKGSLEILLLEGDMNFNSRAASLTEIR 391

Query: 403 QGGSYLIVATDIVARGIDLPETTHIYNFDLPRCAIDYLHRAGRTGRKPFSEEKCVVTNLI 462
           QGG +L+V+TDI ARGIDLPETTHI+NFDLP+   DYLHRAGR GRKPFS+ KC+V NLI
Sbjct: 392 QGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRAGRAGRKPFSDRKCIVANLI 451

Query: 463 TSEERFVLQKFENELLFICEEVVV 474
           TSEERFVLQ++ENEL+F CEE+++
Sbjct: 452 TSEERFVLQRYENELMFSCEEMML 472

[Close]

BLAST of CsaV3_3G013560 vs. TAIR 10
Match: AT5G19210.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 451.8 bits (1161), Expect = 6.7e-127
Identity = 218/318 (68.55%), Postives = 263/318 (82.70%), Query Frame = 0


Query: 156 MQVTKVARMLAAKPAASEDGLNSYVVMALLDGGLLRRHKTWLKADPPEILVATVGSLCQM 215
           MQVTKVARMLAAK   SE  +    VMALLDGG LRRHK+WLKA+PP ILVATV SLC M
Sbjct: 1   MQVTKVARMLAAK---SEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAILVATVASLCHM 60

Query: 216 VERQFLDLGSLNVLVIDEVDFMFSSSKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHF 275
           +E+    + S+ VLV+DEVDF+F SSKQV S++KLLTS+SS   RQT+FASASIPQH+HF
Sbjct: 61  LEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSSCDKRQTVFASASIPQHKHF 120

Query: 276 LHDCIQQKWTKSTVVHIHINSTQPMPSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIF 335
           +HDCIQQKWTK  VVH+H+++  PMP CLLHRFV CEK  KHQ LL LL +D P+SAIIF
Sbjct: 121 VHDCIQQKWTKRDVVHVHVSAIMPMPLCLLHRFVMCEKTNKHQVLLALLESDAPESAIIF 180

Query: 336 VSEQSEKSKKAGKIPPTTLMIDFLKASYGGCSDVILLEEDVNYNLRASSLSELRQGGSYL 395
           V EQSEKSKKAG  P TTL+++FLK SY G  +++LLE D+N+N RA+SL+E+RQGG +L
Sbjct: 181 VGEQSEKSKKAGNDPSTTLLMEFLKTSYKGSLEILLLEGDMNFNSRAASLTEIRQGGGFL 240

Query: 396 IVATDIVARGIDLPETTHIYNFDLPRCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERF 455
           +V+TDI ARGIDLPETTHI+NFDLP+   DYLHRAGR GRKPFS+ KC+V NLITSEERF
Sbjct: 241 LVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRAGRAGRKPFSDRKCIVANLITSEERF 300

Query: 456 VLQKFENELLFICEEVVV 474
           VLQ++ENEL+F CEE+++
Sbjct: 301 VLQRYENELMFSCEEMML 315

[Close]

BLAST of CsaV3_3G013560 vs. TAIR 10
Match: AT1G12770.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 138.3 bits (347), Expect = 1.6e-32
Identity = 120/447 (26.85%), Postives = 192/447 (42.95%), Query Frame = 0


Query: 68  FEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQTGSGKTLT 127
           F A +  E+    +P+ +L   E  GF  PTDVQ  A+P +  G D V+ + TGSGKTL 
Sbjct: 107 FSAKSFEEL---GLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLA 166

Query: 128 YLLLIFSVI-------------NAKKSAVQALIVVPTRELGMQVTKVARMLAAKPAASED 187
           YLL I S I             N K++ +QA+IV P+RELGMQ+ +    L         
Sbjct: 167 YLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGP------ 226

Query: 188 GLNSYVVMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEV 247
            ++  +V  L+ G    R +  LK + P I+V T G + ++ +   L       LV+DEV
Sbjct: 227 -VHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEV 286

Query: 248 DFMFSSSKQVSSLKKLLTSYSSFS------------NRQTIFASASIP-----QHRHFLH 307
           D + S + +   + ++L      S            NRQTI  SA++P       + + H
Sbjct: 287 DELLSFNFR-EDIHRILEHVGKRSGAGPKGEVDERANRQTILVSATVPFSVIRAAKSWSH 346

Query: 308 DCIQQKWTKSTVVHI-------------------HINST-QPMPSCLLHRFVTCEKNKKH 367
           + +  +  K T +                      I +T Q +P  L H +   +   K 
Sbjct: 347 EPVLVQANKVTPLDTVQPSAPVMSLTPTTSEADGQIQTTIQSLPPALKHYYCISKHQHKV 406

Query: 368 QTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFLKASYGGCSDVILLEEDVN 427
            TL   +     QS I F++   +      K+    +    +    G             
Sbjct: 407 DTLRRCVHALDAQSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLG---------- 466

Query: 428 YNLRASSLSELRQGGSYLIVATDIVARGIDLPETTHIYNFDLPRCAIDYLHRAGRTGRKP 465
              R++ L + + G   ++V  ++ ARG+D+ E   + N +LP  A+ Y HRAGRTGR  
Sbjct: 467 ---RSTVLKKFKNGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHYAHRAGRTGR-- 526

[Close]

BLAST of CsaV3_3G013560 vs. TAIR 10
Match: AT1G55150.1 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 129.8 bits (325), Expect = 5.8e-30
Identity = 104/359 (28.97%), Postives = 166/359 (46.24%), Query Frame = 0


Query: 82  PEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQTGSGKTLTYLLLIFSVINAKKS 141
           P+++L   ++ GF  PT +Q Q  P+   GRD +  A+TGSGKTL+YLL     +NA+  
Sbjct: 107 PDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPM 166

Query: 142 AVQ-----ALIVVPTRELGMQVTKVARMLAAKPAASEDGLNSYVVMALLDGGLLRRHKTW 201
                    L++ PTREL +Q+         +  AS+ G +S +    + GG+ +  +  
Sbjct: 167 LAHGDGPIVLVLAPTRELAVQI---------QQEASKFGSSSKIKTTCIYGGVPKGPQVR 226

Query: 202 LKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSSSKQVSSLKKLLTSYSS 261
                 EI++AT G L  M+E    +L  +  LV+DE D M         ++K+++    
Sbjct: 227 DLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFD-PQIRKIVSHIR- 286

Query: 262 FSNRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHINSTQPMPSCLLHRFVTCEKNKK 321
             +RQT++ SA+ P+    L      K        + I S+    +  + + V      +
Sbjct: 287 -PDRQTLYWSATWPKEVEQL-----SKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQ 346

Query: 322 HQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFLKASYGGCSDVILLEEDV 381
               L  LL DI   + I V   ++K     +I     M  +   S  G         D 
Sbjct: 347 KYNKLVKLLEDIMDGSRILVFLDTKKG--CDQITRQLRMDGWPALSIHG---------DK 406

Query: 382 NYNLRASSLSELRQGGSYLIVATDIVARGIDLPETTHIYNFDLPRCAIDYLHRAGRTGR 436
           +   R   LSE R G S ++ ATD+ ARG+D+ +  ++ N+D P    DY+HR GRTGR
Sbjct: 407 SQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGR 437

[Close]

BLAST of CsaV3_3G013560 vs. TAIR 10
Match: AT5G63120.2 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-29
Identity = 117/403 (29.03%), Postives = 188/403 (46.65%), Query Frame = 0


Query: 78  NGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQTGSGKTLTYLLLIFSVIN 137
           + + P++IL    ++GF  PT +Q Q  P+   GRD +  A+TGSGKTL YLL     ++
Sbjct: 169 DANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVS 228

Query: 138 AKKSAVQ-----ALIVVPTRELGMQVTKVARMLAAKPAASEDGLNSYVVMALLDGGLLRR 197
           A+    Q      LI+ PTREL +Q+ + +R           GL S V    + GG  + 
Sbjct: 229 AQPRLGQDDGPIVLILAPTRELAVQIQEESRKF---------GLRSGVRSTCIYGGAPKG 288

Query: 198 HKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSSSKQVSSLKKLLT 257
            +        EI++AT G L  M+E Q  +L  +  LV+DE D M     +   ++K+++
Sbjct: 289 PQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFE-PQIRKIVS 348

Query: 258 SYSSFSNRQTIFASASIPQH-----RHFLHDCIQQKWTKSTVVHIHINSTQPMPSCLLHR 317
                 +RQT+  SA+ P+      R FL D       K+ +    + + Q + + ++  
Sbjct: 349 QIR--PDRQTLLWSATWPREVETLARQFLRDPY-----KAIIGSTDLKANQSI-NQVIEI 408

Query: 318 FVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFLKASYGGCS 377
             T EK  +  TLL  L+       +IFV     ++K+        L +D   A      
Sbjct: 409 VPTPEKYNRLLTLLKQLMDG--SKILIFV-----ETKRGCDQVTRQLRMDGWPA------ 468

Query: 378 DVILLEEDVNYNLRASSLSELRQGGSYLIVATDIVARGIDLPETTHIYNFDLPRCAIDYL 437
             + +  D   + R   L+E + G S ++ ATD+ ARG+D+ +   + N+D P    DY+
Sbjct: 469 --LAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYI 528

Query: 438 HRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEE 471
           HR GRTGR   +  K +     T +      KF  EL+ I +E
Sbjct: 529 HRIGRTGR---AGAKGMAFTFFTHDN----AKFARELVKILQE 531

The following BLAST results are available for this feature:

BLAST of CsaV3_3G013560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011650984.1	9.0e-267	100.00	DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X4 [Cucumis sativu...	[more]
XP_031738178.1	6.4e-265	98.95	DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X3 [Cucumis sativu...	[more]
XP_031738177.1	6.6e-262	93.85	DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X2 [Cucumis sativu...	[more]
XP_008438702.1	2.1e-260	97.46	PREDICTED: DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 [Cuc...	[more]
XP_031738176.1	4.8e-260	92.93	DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 [Cucumis sativu...	[more]

BLAST of CsaV3_3G013560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3E9C3	7.6e-168	66.89	DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q0JFN7	1.6e-149	64.11	DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Oryza sativa subsp. jap...	[more]
Q8Y7M8	2.5e-33	31.32	ATP-dependent RNA helicase DbpA OS=Listeria monocytogenes serovar 1/2a (strain A...	[more]
Q6H874	1.6e-32	27.65	DEAD-box ATP-dependent RNA helicase 47A OS=Oryza sativa subsp. japonica OX=39947...	[more]
Q81DF9	2.7e-32	30.59	DEAD-box ATP-dependent RNA helicase CshE OS=Bacillus cereus (strain ATCC 14579 /...	[more]

BLAST of CsaV3_3G013560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5M9	4.3e-267	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G149880 PE=4 SV=1	[more]
A0A1S3AX19	1.0e-260	97.46	DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 OS=Cucumis melo...	[more]
A0A6J1C9C7	2.2e-231	87.10	DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 OS=Momordica ch...	[more]
A0A5D3D0Z8	1.1e-225	88.37	DEAD-box ATP-dependent RNA helicase 58 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A6J1EZV7	2.5e-222	83.12	DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Cucurbita moschata OX=3...	[more]

BLAST of CsaV3_3G013560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19210.2	5.4e-169	66.89	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT5G19210.1	6.7e-127	68.55	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G12770.1	1.6e-32	26.85	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G55150.1	5.8e-30	28.97	DEA(D/H)-box RNA helicase family protein	[more]
AT5G63120.2	1.3e-29	29.03	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 93..295 e-value: 2.3E-34 score: 130.1
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 105..287 score: 20.411737
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 357..437 e-value: 3.3E-11 score: 53.2
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 316..435 e-value: 2.1E-16 score: 60.2
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 320..473 score: 13.23764
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 302..470 e-value: 5.0E-26 score: 93.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 44..284 e-value: 4.8E-47 score: 162.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 106..450
IPR011545	DEAD/DEAH box helicase domain	PFAM	PF00270	DEAD	coord: 98..271 e-value: 1.3E-29 score: 103.2
None	No IPR available	PANTHER	PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	coord: 42..472
None	No IPR available	PANTHER	PTHR47958:SF95	DEAD-BOX ATP-DEPENDENT RNA HELICASE 58, CHLOROPLASTIC	coord: 42..472
None	No IPR available	CDD	cd00268	DEADc	coord: 85..271 e-value: 3.78937E-54 score: 178.019
None	No IPR available	CDD	cd18787	SF2_C_DEAD	coord: 304..449 e-value: 2.62678E-25 score: 98.7336

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G013560.1	CsaV3_3G013560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding