CsaV3_3G012310 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G012310
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	HR-like lesion-inducer
Location	chr3: 9453642 .. 9455672 (+)
RNA-Seq Expression	CsaV3_3G012310
Synteny	CsaV3_3G012310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACTGAATAAATTAGTCAGCCGACTAAAAAGATATAGACTCGAGGATTTAGAGATTTTTTTAGAAAAATAAATTTGATTTGATGGTTTGAAATTTGAAATTTTGGGAAGTGGTGTGACACTCCAAATTCCTTTTTGTAGGTCCTCATTTATAACTGTGTTTTGCCATCAATTTTTTTTGCCTCTAAGAGTTGCGAGCCAGATTACCTTTGTCCATTTTCAAATATGGGATTCTTCTCCGCCCTTGGACGCCTCCTCTTTGCCTCCTTCTTCATCCTCTCTGCTTGTCAGATGTAAGTTCACTTGTATTCCTCACTCAATTCTCATATTTATTGGATCTAGACTATTGTTGCTATTTTGGCTTGTATTCCACTCCTTTTCATTTCCCAAATAGCTATTTTGGCTATTTGGGTTTTGCTTCCATTTCCAAAGAAACGAAAACTCAAATGAAAATGGCTATGCTAGTTGTTCTTATGTGATAATTTTTACTTTTAATGGGCCAGATTTATTATGTTCCCATTTATTGGTCTTTTATTTGGTTATTTTCATTGAGAGTGGAGGGCTCAAAGCATTTTCACTGCCCTAATTTTATTATCTATAGGCCTTCATTTGTATATGTATCTATATTTTACACAGATATTTATTTATTGTTTTTTTAATATCTGTGTGTTTTTCTTAGGTTCAGCTCTTTTTTAGGTATGGGTGTTATATCAAGGGGATGAAATTGCATTGAAAATTTCCAATTTTCAAATTTCCATTAGCTAATCCTGGGATAACAAAACCAAGGACTCAATCACCAGCTGCCTTACCTCATTGAACTAATAAATGAAAGTTTAATTATGAGTGATCTGTTTTTCACCAATTTGGTTTCATAAATAAATAGAAGAAAAGTAATCTTTAATCTATCTCTGTTGGATGCACAATCTTCCTGAAAATCATTTTTTTTTGGCTAAAAACCAATTTTTGAAAGTTTTATTTAGTTTGAACACAGGCCAATCTCACCTGCACTATGTTTACATTTACCTTGTTAGGTTTAACAATAATGGTGGGCCAGCAGCTGTGGAATTGTCTTCAAAGGTAGCTGTTCTGAGGAGAAATTTATCATCCAAGTTGGGGTTGCTATACCTGATATTGATGTAAGGCCATGTTAGGCCTTATTCACCACTTCAATATTGACAATATTGACCATACCTGTAGACTGAAATTTTGATAATTTTCTCAGGTCAGACATGTGGTTGGTCTTTCATTATCTCTCAAAGGGATTGGAGCTCTTCTATTTGTTTTGGGCTCAAGAGTTGGAGCTTATCTTTTGGTAAGGATTCACCATGTTCAAAATTTAGCATTGTACACATACATTTGCTACCCACATTTATTCCTAACTAATGTTACTCTAAATTTATGCATCTGCAAATTGCCCTCTCTTTCAGCTTCTTTACTTGGCTATTATCACTCCGGTTCTTTTCGATTTCTTCAACCTTAGTCTACTGAAACCTACTTTTGGTATCATGTTAAGTGATTTCTTAGAGGTTTGTCCATGTGCTTTCTAACTTTTTCCATCTTTTCATTTTAAGCATCTCCAATTTAATCATAAGAATCCTATTCTCTTGGCAATTTAATCATAAGAAATTTAATCATAAGAATCCTATTCTCTTGGCAGCACATTGCACTTTTTGGTGCTCTCCTTTTCTTCATAGGGATGAAGGGCACAAGTCCAAAGAAGCACTCAAAAAAGAAGACCCAAAAACAAAAAGCAAAAGCAAAAGCACATTAGATTTGTCAAAAGCAAAGATTGGCCATTGGATTGGATTAATTTGCTGTCATTCAGTTCTTAGATTTACACACATTTTCACCATTGATGCAAAAGTTTTGTTTTTGATTTTTTGGATATATGTTTTGTTTTTCATTGATGCCAAATAGCTTGAATGAGTAGTTATGTTCAATTTGAGCGGCATTAAGGACTTTGTACTTCTAGCTAAGTTTTGTTATGGCATTGTCTTTATTCTTCTTAATTGAAAATCAAATCTGATTTAGC

mRNA sequence

ATGGGATTCTTCTCCGCCCTTGGACGCCTCCTCTTTGCCTCCTTCTTCATCCTCTCTGCTTGTCAGATGTTTAACAATAATGGTGGGCCAGCAGCTGTGGAATTGTCTTCAAAGGTAGCTGTTCTGAGGAGAAATTTATCATCCAAGTTGGGGTTGCTATACCTGATATTGATGTCAGACATGTGGTTGGTCTTTCATTATCTCTCAAAGGGATTGGAGCTCTTCTATTTGTTTTGGGCTCAAGAGTTGGAGCTTATCTTTTGCTTCTTTACTTGGCTATTATCACTCCGGTTCTTTTCGATTTCTTCAACCTTAGTCTACTGA

Coding sequence (CDS)

ATGGGATTCTTCTCCGCCCTTGGACGCCTCCTCTTTGCCTCCTTCTTCATCCTCTCTGCTTGTCAGATGTTTAACAATAATGGTGGGCCAGCAGCTGTGGAATTGTCTTCAAAGGTAGCTGTTCTGAGGAGAAATTTATCATCCAAGTTGGGGTTGCTATACCTGATATTGATGTCAGACATGTGGTTGGTCTTTCATTATCTCTCAAAGGGATTGGAGCTCTTCTATTTGTTTTGGGCTCAAGAGTTGGAGCTTATCTTTTGCTTCTTTACTTGGCTATTATCACTCCGGTTCTTTTCGATTTCTTCAACCTTAGTCTACTGA

Protein sequence

MGFFSALGRLLFASFFILSACQMFNNNGGPAAVELSSKVAVLRRNLSSKLGLLYLILMSDMWLVFHYLSKGLELFYLFWAQELELIFCFFTWLLSLRFFSISSTLVY*

Homology

[Close]

BLAST of CsaV3_3G012310 vs. NCBI nr
Match: KGN56911.2 (hypothetical protein Csa_009884 [Cucumis sativus])

HSP 1 Score: 203.8 bits (517), Expect = 7.7e-49
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MGFFSALGRLLFASFFILSACQMFNNNGGPAAVELSSKVAVLRRNLSSKLGLLYLILMSD 60
           MGFFSALGRLLFASFFILSACQMFNNNGGPAAVELSSKVAVLRRNLSSKLGLLYLILMSD
Sbjct: 1   MGFFSALGRLLFASFFILSACQMFNNNGGPAAVELSSKVAVLRRNLSSKLGLLYLILMSD 60

Query: 61  MWLVFHYLSKGLELFYLFWAQELELIFCFFTWLLSLRFFSISSTLVY 108
           MWLVFHYLSKGLELFYLFWAQELELIFCFFTWLLSLRFFSISSTLVY
Sbjct: 61  MWLVFHYLSKGLELFYLFWAQELELIFCFFTWLLSLRFFSISSTLVY 107

[Close]

BLAST of CsaV3_3G012310 vs. NCBI nr
Match: TYK17285.1 (uncharacterized protein E5676_scaffold434G001390 [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 3.4e-12
Identity = 46/55 (83.64%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1  MGFFSALGRLLFASFFILSACQMFN---NNGGPAAVELSSKVAVLRRNLSSKLGL 53
          MGFFS  GRLLFASFFILSA QMFN   NNGGPAA ELSSKVAVLRRNLSSKL +
Sbjct: 1  MGFFSFFGRLLFASFFILSAWQMFNEFGNNGGPAAAELSSKVAVLRRNLSSKLAV 55

[Close]

BLAST of CsaV3_3G012310 vs. NCBI nr
Match: KAA0049272.1 (uncharacterized protein E6C27_scaffold171G005120 [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 3.4e-12
Identity = 46/55 (83.64%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1  MGFFSALGRLLFASFFILSACQMFN---NNGGPAAVELSSKVAVLRRNLSSKLGL 53
          MGFFS  GRLLFASFFILSA QMFN   NNGGPAA ELSSKVAVLRRNLSSKL +
Sbjct: 1  MGFFSFFGRLLFASFFILSAWQMFNEFGNNGGPAAAELSSKVAVLRRNLSSKLAV 55

[Close]

BLAST of CsaV3_3G012310 vs. NCBI nr
Match: XP_038877357.1 (uncharacterized protein LOC120069646 [Benincasa hispida])

HSP 1 Score: 82.0 bits (201), Expect = 3.4e-12
Identity = 46/55 (83.64%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1  MGFFSALGRLLFASFFILSACQMFN---NNGGPAAVELSSKVAVLRRNLSSKLGL 53
          MGFFS LGRLLFAS FILSA QMFN   NNGGPAA E SSKVAVLRRNLSSKLG+
Sbjct: 1  MGFFSFLGRLLFASIFILSAWQMFNEFANNGGPAAAEFSSKVAVLRRNLSSKLGV 55

[Close]

BLAST of CsaV3_3G012310 vs. NCBI nr
Match: XP_022143969.1 (uncharacterized protein LOC111013751 [Momordica charantia])

HSP 1 Score: 78.2 bits (191), Expect = 4.9e-11
Identity = 44/55 (80.00%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 1  MGFFSALGRLLFASFFILSACQMFN---NNGGPAAVELSSKVAVLRRNLSSKLGL 53
          MGFFS LGR+LFAS FILSA QMFN   NNGGPAA  LS K+AVLRRNLSSKLGL
Sbjct: 1  MGFFSFLGRVLFASIFILSAWQMFNEFGNNGGPAAEALSPKIAVLRRNLSSKLGL 55

[Close]

BLAST of CsaV3_3G012310 vs. ExPASy TrEMBL
Match: A0A5A7U0G2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G005120 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.6e-12
Identity = 46/55 (83.64%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1  MGFFSALGRLLFASFFILSACQMFN---NNGGPAAVELSSKVAVLRRNLSSKLGL 53
          MGFFS  GRLLFASFFILSA QMFN   NNGGPAA ELSSKVAVLRRNLSSKL +
Sbjct: 1  MGFFSFFGRLLFASFFILSAWQMFNEFGNNGGPAAAELSSKVAVLRRNLSSKLAV 55

[Close]

BLAST of CsaV3_3G012310 vs. ExPASy TrEMBL
Match: A0A5D3D0P1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001390 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.6e-12
Identity = 46/55 (83.64%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1  MGFFSALGRLLFASFFILSACQMFN---NNGGPAAVELSSKVAVLRRNLSSKLGL 53
          MGFFS  GRLLFASFFILSA QMFN   NNGGPAA ELSSKVAVLRRNLSSKL +
Sbjct: 1  MGFFSFFGRLLFASFFILSAWQMFNEFGNNGGPAAAELSSKVAVLRRNLSSKLAV 55

[Close]

BLAST of CsaV3_3G012310 vs. ExPASy TrEMBL
Match: A0A6J1CQX1 (uncharacterized protein LOC111013751 OS=Momordica charantia OX=3673 GN=LOC111013751 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.4e-11
Identity = 44/55 (80.00%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 1  MGFFSALGRLLFASFFILSACQMFN---NNGGPAAVELSSKVAVLRRNLSSKLGL 53
          MGFFS LGR+LFAS FILSA QMFN   NNGGPAA  LS K+AVLRRNLSSKLGL
Sbjct: 1  MGFFSFLGRVLFASIFILSAWQMFNEFGNNGGPAAEALSPKIAVLRRNLSSKLGL 55

[Close]

BLAST of CsaV3_3G012310 vs. ExPASy TrEMBL
Match: A0A6J1FRE6 (uncharacterized protein LOC111447492 OS=Cucurbita moschata OX=3662 GN=LOC111447492 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.0e-11
Identity = 44/55 (80.00%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 1  MGFFSALGRLLFASFFILSACQMFN---NNGGPAAVELSSKVAVLRRNLSSKLGL 53
          MGFFS LGR+LFAS FILSA QMFN   NNGG AA ELS KVAVLRRNLSSKLG+
Sbjct: 1  MGFFSFLGRVLFASIFILSAWQMFNEFSNNGGSAAAELSPKVAVLRRNLSSKLGV 55

[Close]

BLAST of CsaV3_3G012310 vs. ExPASy TrEMBL
Match: A0A6J1E8C2 (uncharacterized protein LOC111431764 OS=Cucurbita moschata OX=3662 GN=LOC111431764 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.0e-10
Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 1  MGFFSALGRLLFASFFILSACQMFN---NNGGPAAVELSSKVAVLRRNLSSKLGL 53
          M FFS LGR+LFAS FILSA QMFN   +NGGPAA ELS KVAVLRRNLSSKLG+
Sbjct: 1  MRFFSFLGRVLFASIFILSAWQMFNEFGHNGGPAAAELSLKVAVLRRNLSSKLGV 55

[Close]

BLAST of CsaV3_3G012310 vs. TAIR 10
Match: AT5G43460.1 (HR-like lesion-inducing protein-related )

HSP 1 Score: 62.8 bits (151), Expect = 2.0e-10
Identity = 34/52 (65.38%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1  MGFFSALGRLLFASFFILSACQMFNNNGGPAAVELSSKVAVLRRNLSSKLGL 53
          MGFFS LGR+LFAS FILSA QMF N+GGPAA EL+ K+ +++ +LSS+LG+
Sbjct: 1  MGFFSFLGRVLFASLFILSAWQMF-NDGGPAAKELAPKLDLVKAHLSSRLGV 51

[Close]

BLAST of CsaV3_3G012310 vs. TAIR 10
Match: AT1G04340.1 (HR-like lesion-inducing protein-related )

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-09
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 1  MGFFSALGRLLFASFFILSACQMFNN---NGGPAAVELSSKVAVLRRNLSSKLGL 53
          MGFFS LGR+LFAS FILSA QMFN+   +GGPAA EL+ K+ + + +LSS LG+
Sbjct: 1  MGFFSFLGRVLFASLFILSAWQMFNDFGTDGGPAAKELAPKLDLTKAHLSSILGV 55

The following BLAST results are available for this feature:

BLAST of CsaV3_3G012310 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56911.2	7.7e-49	100.00	hypothetical protein Csa_009884 [Cucumis sativus]	[more]
TYK17285.1	3.4e-12	83.64	uncharacterized protein E5676_scaffold434G001390 [Cucumis melo var. makuwa]	[more]
KAA0049272.1	3.4e-12	83.64	uncharacterized protein E6C27_scaffold171G005120 [Cucumis melo var. makuwa]	[more]
XP_038877357.1	3.4e-12	83.64	uncharacterized protein LOC120069646 [Benincasa hispida]	[more]
XP_022143969.1	4.9e-11	80.00	uncharacterized protein LOC111013751 [Momordica charantia]	[more]

BLAST of CsaV3_3G012310 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G012310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U0G2	1.6e-12	83.64	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D0P1	1.6e-12	83.64	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1CQX1	2.4e-11	80.00	uncharacterized protein LOC111013751 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1FRE6	4.0e-11	80.00	uncharacterized protein LOC111447492 OS=Cucurbita moschata OX=3662 GN=LOC1114474...	[more]
A0A6J1E8C2	2.0e-10	78.18	uncharacterized protein LOC111431764 OS=Cucurbita moschata OX=3662 GN=LOC1114317...	[more]

BLAST of CsaV3_3G012310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43460.1	2.0e-10	65.38	HR-like lesion-inducing protein-related	[more]
AT1G04340.1	1.7e-09	61.82	HR-like lesion-inducing protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008637	HR-like lesion-inducer	PFAM	PF05514	HR_lesion	coord: 1..53 e-value: 5.5E-9 score: 36.3
None	No IPR available	PANTHER	PTHR31474	FAMILY NOT NAMED	coord: 1..52
None	No IPR available	PANTHER	PTHR31474:SF18	BNAA09G16540D PROTEIN	coord: 1..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G012310.1	CsaV3_3G012310.1	mRNA