|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. GTCAAAGTGAACATAACTCAACTATAATTTTACTAACAATTACATGTCTTTAACGTGATTCTCCAACTCAATGTACTCAAAAGGAAAAGAAACAATAATTTAAAAAAATGATAAAAACTTGATAATTAAAATGAAGGGTACGAGCAAAAAGATTTTATCTTGTAAACTTAGTCGATTATCTTATAAGATTAGTCGAGGGAGAGGTAATCTAGCGGTAGCAGAAGAATGAAAGTGTCCATCTTTGGTAGCATAGGTGTCTCAATTCAATAGGTTACCTCCTCCTCCACATATGCAATAAATTAAAATTAGGCTTTTTCGTTGCCCTTTATAATTCTTCCTCATTTCTCACCATCTCTATTCCCCATTTTTACCATGCCCTTCCTCCTTCAACCTCCTCTCTTTGCTCTGTTTTTCCTCACATCCTTCTCTCCTTCTTTGTCTTTTCCAAGGAATTCTTCCTCCTTTGGTGAATCAAGCTCCAACCCATCACTCAACAACATGTTGTTCACCTCCAGCGAGTCTTCCGGCAGGCCGTCCCGCCGAAAAAACACAATTTTTGGTGCCCCTTGTGGGCTCTGTGGCCAAGTCATTTTTGGCTCTGAAGCTCTTAATCATCATTACAATTACCATTTCTTGCAGAATGAGCTTGCTTCTTTTAGAGGCCACTCTAATCCTTCCTCCGGTATCTCTCAACGGCCGCCGTTATGGTCCAATTATTTCCATGGCCAAGCCTCTGCTTCTCGAGAACCCCAAATGACGCTTAACGATTATTTGACGATGCCGCCGTCTTTGAGAAGCTATTCAGGCGCCGCCATTGATATGGCTCACTTTCTTCCGCTCCATCCATTGTTGGCTCAACCGCCGCCTCTGCCGCGCACCAGCACCGCCAATAGAATGAACTTTCAACAGAATCAGGCTGTGGCAGGGCATAGGAGGCAGGGAAACCAAGTCCAATGGAATAATGGCGGAGTGAGGGAAGTTGGTGGCCAGCCGGCGTCAGAAGAGCAGCCACCCCAAGATGTGATAGATCTAAACAGTGAGGAGAATGATTGTAGCTCTGATGATTCAGAAGGCTTGGATTTGACACTGAGTCTCTAAAGAAGTTTACTTTTTTTATGAAGAAGAAAAGTTCATGTAGTTTTTTTCTTTTAAGTTAATAATTTTTTTTTAACTAAAATGTTTATCTTCCATTAATATATATATTTTCATTTTGCACTTTTTGAGCATTATTGATTAAAATTGTGAAAAAGAAAAAGAGAAAAAAAATAAGATCTTTATTATTATTAATCTTTAAAAGTACATATAAAGAAATCAATAGAAGGCAACTTCGTAGAAAAG mRNA sequence ATGCCCTTCCTCCTTCAACCTCCTCTCTTTGCTCTGTTTTTCCTCACATCCTTCTCTCCTTCTTTGTCTTTTCCAAGGAATTCTTCCTCCTTTGGTGAATCAAGCTCCAACCCATCACTCAACAACATGTTGTTCACCTCCAGCGAGTCTTCCGGCAGGCCGTCCCGCCGAAAAAACACAATTTTTGGTGCCCCTTGTGGGCTCTGTGGCCAAGTCATTTTTGGCTCTGAAGCTCTTAATCATCATTACAATTACCATTTCTTGCAGAATGAGCTTGCTTCTTTTAGAGGCCACTCTAATCCTTCCTCCGGTATCTCTCAACGGCCGCCGTTATGGTCCAATTATTTCCATGGCCAAGCCTCTGCTTCTCGAGAACCCCAAATGACGCTTAACGATTATTTGACGATGCCGCCGTCTTTGAGAAGCTATTCAGGCGCCGCCATTGATATGGCTCACTTTCTTCCGCTCCATCCATTGTTGGCTCAACCGCCGCCTCTGCCGCGCACCAGCACCGCCAATAGAATGAACTTTCAACAGAATCAGGCTGTGGCAGGGCATAGGAGGCAGGGAAACCAAGTCCAATGGAATAATGGCGGAGTGAGGGAAGTTGGTGGCCAGCCGGCGTCAGAAGAGCAGCCACCCCAAGATGTGATAGATCTAAACAGTGAGGAGAATGATTGTAGCTCTGATGATTCAGAAGGCTTGGATTTGACACTGAGTCTCTAA Coding sequence (CDS) ATGCCCTTCCTCCTTCAACCTCCTCTCTTTGCTCTGTTTTTCCTCACATCCTTCTCTCCTTCTTTGTCTTTTCCAAGGAATTCTTCCTCCTTTGGTGAATCAAGCTCCAACCCATCACTCAACAACATGTTGTTCACCTCCAGCGAGTCTTCCGGCAGGCCGTCCCGCCGAAAAAACACAATTTTTGGTGCCCCTTGTGGGCTCTGTGGCCAAGTCATTTTTGGCTCTGAAGCTCTTAATCATCATTACAATTACCATTTCTTGCAGAATGAGCTTGCTTCTTTTAGAGGCCACTCTAATCCTTCCTCCGGTATCTCTCAACGGCCGCCGTTATGGTCCAATTATTTCCATGGCCAAGCCTCTGCTTCTCGAGAACCCCAAATGACGCTTAACGATTATTTGACGATGCCGCCGTCTTTGAGAAGCTATTCAGGCGCCGCCATTGATATGGCTCACTTTCTTCCGCTCCATCCATTGTTGGCTCAACCGCCGCCTCTGCCGCGCACCAGCACCGCCAATAGAATGAACTTTCAACAGAATCAGGCTGTGGCAGGGCATAGGAGGCAGGGAAACCAAGTCCAATGGAATAATGGCGGAGTGAGGGAAGTTGGTGGCCAGCCGGCGTCAGAAGAGCAGCCACCCCAAGATGTGATAGATCTAAACAGTGAGGAGAATGATTGTAGCTCTGATGATTCAGAAGGCTTGGATTTGACACTGAGTCTCTAA Protein sequence MPFLLQPPLFALFFLTSFSPSLSFPRNSSSFGESSSNPSLNNMLFTSSESSGRPSRRKNTIFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASFRGHSNPSSGISQRPPLWSNYFHGQASASREPQMTLNDYLTMPPSLRSYSGAAIDMAHFLPLHPLLAQPPPLPRTSTANRMNFQQNQAVAGHRRQGNQVQWNNGGVREVGGQPASEEQPPQDVIDLNSEENDCSSDDSEGLDLTLSL*
Homology
BLAST of CsaV3_3G012000 vs. NCBI nr
Match: KGN56847.1 (hypothetical protein Csa_010766 [Cucumis sativus]) HSP 1 Score: 479.2 bits (1232), Expect = 2.1e-131 Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0
Query: 1 MPFLLQPPLFALFFLTSFSPSLSFPRNSSSFGESSSNPSLNNMLFTSSESSGRPSRRKNT 60
MPFLLQPPLFALFFLTSFSPSLSFPRNSSSFGESSSNPSLNNMLFTSSESSGRPSRRKNT
Sbjct: 1 MPFLLQPPLFALFFLTSFSPSLSFPRNSSSFGESSSNPSLNNMLFTSSESSGRPSRRKNT 60
Query: 61 IFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASFRGHSNPSSGISQRPPLWSNYFHGQA 120
IFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASFRGHSNPSSGISQRPPLWSNYFHGQA
Sbjct: 61 IFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASFRGHSNPSSGISQRPPLWSNYFHGQA 120
Query: 121 SASREPQMTLNDYLTMPPSLRSYSGAAIDMAHFLPLHPLLAQPPPLPRTSTANRMNFQQN 180
SASREPQMTLNDYLTMPPSLRSYSGAAIDMAHFLPLHPLLAQPPPLPRTSTANRMNFQQN
Sbjct: 121 SASREPQMTLNDYLTMPPSLRSYSGAAIDMAHFLPLHPLLAQPPPLPRTSTANRMNFQQN 180
Query: 181 QAVAGHRRQGNQVQWNNGGVREVGGQPASEEQPPQDVIDLNSEENDCSSDDSEGLDLTLS 240
QAVAGHRRQGNQVQWNNGGVREVGGQPASEEQPPQDVIDLNSEENDCSSDDSEGLDLTLS
Sbjct: 181 QAVAGHRRQGNQVQWNNGGVREVGGQPASEEQPPQDVIDLNSEENDCSSDDSEGLDLTLS 240
Query: 241 L 242
L
Sbjct: 241 L 241
BLAST of CsaV3_3G012000 vs. NCBI nr
Match: KAA0049241.1 (hypothetical protein E6C27_scaffold171G004810 [Cucumis melo var. makuwa] >TYK17317.1 hypothetical protein E5676_scaffold434G001720 [Cucumis melo var. makuwa]) HSP 1 Score: 405.2 bits (1040), Expect = 3.9e-109 Identity = 210/241 (87.14%), Postives = 222/241 (92.12%), Query Frame = 0
Query: 1 MPFLLQPPLFALFFLTSFSPSLSFPRNSSSFGESSSNPSLNNMLFTSSESSGRPSRRKNT 60
M FLLQPPLFALFFLTSFSPS S P NSSSFG+S SNPSL++MLFTSSESS RPS R+NT
Sbjct: 1 MAFLLQPPLFALFFLTSFSPSWSLPWNSSSFGKSGSNPSLDDMLFTSSESSSRPS-RQNT 60
Query: 61 IFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASFRGHSNPSSGISQRPPLWSNYFHGQA 120
IFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASFRGHSNP SG+S RPP +FHGQA
Sbjct: 61 IFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASFRGHSNPCSGVSHRPP----FFHGQA 120
Query: 121 SASREPQMTLNDYLTMPPSLRSYSGAAIDMAHFLPLHPLLAQPPPLPRTSTANRMNFQQN 180
SASREPQMTLNDYLTMPPSLRS+SGAAIDMAHFLPLHPLLA+PPPLPRTST N MNFQQN
Sbjct: 121 SASREPQMTLNDYLTMPPSLRSHSGAAIDMAHFLPLHPLLARPPPLPRTSTPNSMNFQQN 180
Query: 181 QAVAGHRRQGNQVQWNNGGVREVGGQPASEEQPPQDVIDLNSEENDCSSDDSEGLDLTLS 240
QAVA RRQGNQ++WNNG VREVGGQPASE+QPPQDVIDL+SEENDCSSD SEGLDLTLS
Sbjct: 181 QAVARQRRQGNQIRWNNGRVREVGGQPASEQQPPQDVIDLSSEENDCSSDGSEGLDLTLS 236
Query: 241 L 242
L
Sbjct: 241 L 236
BLAST of CsaV3_3G012000 vs. NCBI nr
Match: KAG6597359.1 (hypothetical protein SDJN03_10539, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 288.9 bits (738), Expect = 4.1e-74 Identity = 160/240 (66.67%), Postives = 184/240 (76.67%), Query Frame = 0
Query: 9 LFALFFLTSFSPSLSFPRNSSSFGESSSNPSLNNMLFTSSESSGRPSRRKNTIFGAPCGL 68
L LFFLT+FSPSL+FP +SS + +S NPSL +L S E+S RP RRK+TIFGAPCGL
Sbjct: 46 LCLLFFLTAFSPSLAFPWSSSPYEKSGWNPSLEELLSASGETSSRPPRRKSTIFGAPCGL 105
Query: 69 CGQVIFGSEALNHHYNYHFLQNELASFRGHSNPSSGISQRPPLWSNYFHGQASASREPQM 128
CGQVIFGSEALNHHYNYHFLQN+LAS+ PSS SQRPP+W++YFHGQASASREPQ+
Sbjct: 106 CGQVIFGSEALNHHYNYHFLQNDLASYGSRLVPSSASSQRPPVWTDYFHGQASASREPQI 165
Query: 129 TLNDYLTMPP-----SLRSYSGAAIDMAHFLPLHPLLAQPPPLPRTSTANRMNFQQNQAV 188
TLN+ LTMPP SLRSY +DMAH LPLHPLLAQPPP R +TAN + N+
Sbjct: 166 TLNNCLTMPPPRQPSSLRSYPSPTVDMAHLLPLHPLLAQPPPPRRITTANGV----NEDA 225
Query: 189 AGHRRQGNQVQWNNGGVREVGGQPASEE-QPPQDVIDLNS-EENDCSSDDSEGLDLTLSL 242
AG R QGNQ Q NNGG R + A+E+ QP Q+VIDLNS EENDCSSD S+GLDLTLSL
Sbjct: 226 AGQRWQGNQNQRNNGGARTTSARSAAEQRQPRQEVIDLNSTEENDCSSDGSDGLDLTLSL 281
BLAST of CsaV3_3G012000 vs. NCBI nr
Match: KAG6582389.1 (hypothetical protein SDJN03_22391, partial [Cucurbita argyrosperma subsp. sororia] >KAG6582743.1 hypothetical protein SDJN03_22745, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 96.3 bits (238), Expect = 3.9e-16 Identity = 84/223 (37.67%), Postives = 101/223 (45.29%), Query Frame = 0
Query: 23 SFPRNSSSFGESSSNPSLNNMLFTSSESSGRPSRRKNTIFGAPCGLCGQVIFGSEALNHH 82
SFP SS F +SS NPS +LFTS ++S RP RKNTIFGAPCGLCGQ I SE LNHH
Sbjct: 10 SFPWKSSPFDKSSWNPSFKELLFTSRKTSCRPC-RKNTIFGAPCGLCGQGILVSETLNHH 69
Query: 83 YNYHFLQN-----ELASFRGHSNPSSGISQRPPLWSNYFHGQASASREPQMTLNDYLTMP 142
L + + S ++ + Q P S F S+ P TL +
Sbjct: 70 CTISCLMSLLLLGPIISLLRKLLAAAVMDQLFPWPSLCF------SKTPNDTLRLHDDAA 129
Query: 143 PSLRSYSGAAIDMAHFLPLHPLLAQPPPLPRTSTANRMNFQQNQAVAGHRRQGNQVQWNN 202
+ A+DMAH+LPLHPLLAQPP P T NR+ W
Sbjct: 130 TVSKKLFRRAVDMAHWLPLHPLLAQPP--PTVLTFNRIRL-----------------WR- 182
Query: 203 GGVREVGGQPASEEQPPQDVIDLNSEENDCSSDDSEGLDLTLS 241
+ EN+CSS SE LDLTLS
Sbjct: 190 -----------------------GNNENNCSSGGSEDLDLTLS 182
BLAST of CsaV3_3G012000 vs. ExPASy TrEMBL
Match: A0A0A0L892 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G134950 PE=4 SV=1) HSP 1 Score: 479.2 bits (1232), Expect = 1.0e-131 Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0
Query: 1 MPFLLQPPLFALFFLTSFSPSLSFPRNSSSFGESSSNPSLNNMLFTSSESSGRPSRRKNT 60
MPFLLQPPLFALFFLTSFSPSLSFPRNSSSFGESSSNPSLNNMLFTSSESSGRPSRRKNT
Sbjct: 1 MPFLLQPPLFALFFLTSFSPSLSFPRNSSSFGESSSNPSLNNMLFTSSESSGRPSRRKNT 60
Query: 61 IFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASFRGHSNPSSGISQRPPLWSNYFHGQA 120
IFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASFRGHSNPSSGISQRPPLWSNYFHGQA
Sbjct: 61 IFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASFRGHSNPSSGISQRPPLWSNYFHGQA 120
Query: 121 SASREPQMTLNDYLTMPPSLRSYSGAAIDMAHFLPLHPLLAQPPPLPRTSTANRMNFQQN 180
SASREPQMTLNDYLTMPPSLRSYSGAAIDMAHFLPLHPLLAQPPPLPRTSTANRMNFQQN
Sbjct: 121 SASREPQMTLNDYLTMPPSLRSYSGAAIDMAHFLPLHPLLAQPPPLPRTSTANRMNFQQN 180
Query: 181 QAVAGHRRQGNQVQWNNGGVREVGGQPASEEQPPQDVIDLNSEENDCSSDDSEGLDLTLS 240
QAVAGHRRQGNQVQWNNGGVREVGGQPASEEQPPQDVIDLNSEENDCSSDDSEGLDLTLS
Sbjct: 181 QAVAGHRRQGNQVQWNNGGVREVGGQPASEEQPPQDVIDLNSEENDCSSDDSEGLDLTLS 240
Query: 241 L 242
L
Sbjct: 241 L 241
BLAST of CsaV3_3G012000 vs. ExPASy TrEMBL
Match: A0A5A7U6I9 (C2H2-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001720 PE=4 SV=1) HSP 1 Score: 405.2 bits (1040), Expect = 1.9e-109 Identity = 210/241 (87.14%), Postives = 222/241 (92.12%), Query Frame = 0
Query: 1 MPFLLQPPLFALFFLTSFSPSLSFPRNSSSFGESSSNPSLNNMLFTSSESSGRPSRRKNT 60
M FLLQPPLFALFFLTSFSPS S P NSSSFG+S SNPSL++MLFTSSESS RPS R+NT
Sbjct: 1 MAFLLQPPLFALFFLTSFSPSWSLPWNSSSFGKSGSNPSLDDMLFTSSESSSRPS-RQNT 60
Query: 61 IFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASFRGHSNPSSGISQRPPLWSNYFHGQA 120
IFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASFRGHSNP SG+S RPP +FHGQA
Sbjct: 61 IFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASFRGHSNPCSGVSHRPP----FFHGQA 120
Query: 121 SASREPQMTLNDYLTMPPSLRSYSGAAIDMAHFLPLHPLLAQPPPLPRTSTANRMNFQQN 180
SASREPQMTLNDYLTMPPSLRS+SGAAIDMAHFLPLHPLLA+PPPLPRTST N MNFQQN
Sbjct: 121 SASREPQMTLNDYLTMPPSLRSHSGAAIDMAHFLPLHPLLARPPPLPRTSTPNSMNFQQN 180
Query: 181 QAVAGHRRQGNQVQWNNGGVREVGGQPASEEQPPQDVIDLNSEENDCSSDDSEGLDLTLS 240
QAVA RRQGNQ++WNNG VREVGGQPASE+QPPQDVIDL+SEENDCSSD SEGLDLTLS
Sbjct: 181 QAVARQRRQGNQIRWNNGRVREVGGQPASEQQPPQDVIDLSSEENDCSSDGSEGLDLTLS 236
Query: 241 L 242
L
Sbjct: 241 L 236
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN56847.1 | 2.1e-131 | 100.00 | hypothetical protein Csa_010766 [Cucumis sativus] | [more] |
| KAA0049241.1 | 3.9e-109 | 87.14 | hypothetical protein E6C27_scaffold171G004810 [Cucumis melo var. makuwa] >TYK173... | [more] |
| KAG6597359.1 | 4.1e-74 | 66.67 | hypothetical protein SDJN03_10539, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAG6582389.1 | 3.9e-16 | 37.67 | hypothetical protein SDJN03_22391, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0L892 | 1.0e-131 | 100.00 | C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G134950 P... | [more] |
| A0A5A7U6I9 | 1.9e-109 | 87.14 | C2H2-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 181..199 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 181..241 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 66..86 |
Relationships
The following mRNA feature(s) are a part of this gene:
|
