CsaV3_3G010320 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G010320
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	50S ribosomal protein L18-like
Location	chr3: 8320538 .. 8322538 (+)
RNA-Seq Expression	CsaV3_3G010320
Synteny	CsaV3_3G010320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATAATAAATCACATCAAGAGAGTAGCACAGAAAGCAAGAGGAGGAAGATAGAATTCATACCAGAAGGGAAGTTGCAGCGAATCCTTGAGAGGAAAGTGAAAAATGTTGTTAAGCACGTCAATTCCCGAGTCATCGTCATCGGCAGCCACATTAGTCTCCAGTTTCCTTCACAAACCCACTTCTAGTTCATGGTCATCTTCTTTTTCCAAGCTCTCCATCTCCTTCGACGCCATTAAAGCACCTTCTCTTTCAACTCACAATACAGTATGTTTTCTCTCTTCTACTCCTCTTTCAGTTAGCCATGCATTTCTCTATCTTCCCTGCGAAAATGAAAATAAAAGGGAAAAAAAAACAAGAGAAAACAATCTCAATTTCGAAAAAAACTGATGGAATTTTTTCGAAACTAATCGCGAGTGTTGGTTTGATTGTGGTGCTCGTTTGGGAAATCTGTATAGTTACGTTGTTTTGGAGAGGCTATGAACTTGAATTCAAAGGAGGCTTTCGAATACCTCGACTGTTACGAGGAATGCCATTTTAATTTGGATTATGCAGCAGCCATGGTGTTCGACGAAATGTCTAGTGAAAAGGAAACTAGTTTTTTCCATCGTTTTGTGTGGAGAATAGTTGAGGAATTTATTGGATTTAGCAAATGATTAATCAGCGTTCTAAGCTGGTTAAAATTATGATTTGAGTTTCGTGGATTCTTCAGGATATAACAGTAGATGTTTCAACAACATATCAATGTTTGATACCATATTTTGTAGGTCAAAGTCCCATTTATAAGTTTAGATCAGACAGAGAGATGGCTATGATATTAGAGAAAGGTATGCTACCAAAGTCTCACATTGACTAGTAGGAGAAGATTGTGGGAATATAGGTGAATGTGAGTACGAGATCCATGCGAGTGGTTTTAAGGGAAAGTGAAACTAAAAGAAAAACTATGAAAATTTATACAAAAAATAGGATATATCATGTTGTTGTGGAGATGTTAGAGAGGTCTATTGTCAATAACATCATAGTATGTCCCGAGCTTAATTGTAGCATTAGAATCATTGGTCCCTAAGAATGAAATAGTAAGCTTCAGTGACATGGTCACATGGGAGATCTACAGGTAACCATTCATTGACCAAGTAATCCAAAAAAGGGTGTTGCTTCGAAGGGAGGATAGTTGGGAGTGCAACCAAATCCCTTATTGGCTAACAAAGTAGAATTCTATAATATCTAGGTGAGGACAATTTTTTTTGCTAATATATACGAAGTCTTTTTGGGTGAAACCAAAGAAAATAATATCATAACAACCGTGGGGACGTTGAAGAGGTAAGTTGTCCACACCTTTTGAAATGAAAATTTAGACACTTAAGCTTAAAACCTACAGATATAAGACTGTTCCACATTATGCAAGTCTTGAACTCAGAACATTCATGAAAGAAGAAAATAGTTCATGGAGTTTACGACTACTTACTTTCATTTTGCAGAAGTTTTTGATTAAAGCAGCAGCCTGGACACGAAGATCTCGAGGAGAAGCTGCAAAAAGAGGGAATAAGAAATCATGGAAGCAAAGAACAGATATGTACATGAGACCTTTTGTTTTGGATGTTTACTTTTCAAGGAGGTTCATCCATGCCAAAGTGATGCATCGAGGAACAAGCAAGGTTGTTTCAGCAGCAAGCACTAATTGCAAGGATTTAAGGTATTCATTACCATCACCCACTGATGACAATGCCTGTAGGATTATTGGGAACCTAATTGCTGAGAGATGTAAAGAAGCTGATGTATTTGCAATGTCTTATGATCCTCCAAGCATGGAAAGAATTCAAGACAAAGTTGGAATTGTTATTGATACTATTAAGGAGAATGGTATTATATTTGTATAGACTTCGGTATCCATCTTCTCCACACAAATTGGTCTTCTTTCTACTATGCTAATAATATATGCAAAAAATACTTACATGATTCTTTCTACTATGCTAATAATATATGGCAAAAAATACTTACATGA

mRNA sequence

ATGTTGTTAAGCACGTCAATTCCCGAGTCATCGTCATCGGCAGCCACATTAGTCTCCAGTTTCCTTCACAAACCCACTTCTAGTTCATGGTCATCTTCTTTTTCCAAGCTCTCCATCTCCTTCGACGCCATTAAAGCACCTTCTCTTTCAACTCACAATACAAAGTTTTTGATTAAAGCAGCAGCCTGGACACGAAGATCTCGAGGAGAAGCTGCAAAAAGAGGGAATAAGAAATCATGGAAGCAAAGAACAGATATGTACATGAGACCTTTTGTTTTGGATGTTTACTTTTCAAGGAGGTTCATCCATGCCAAAGTGATGCATCGAGGAACAAGCAAGGTTGTTTCAGCAGCAAGCACTAATTGCAAGGATTTAAGGTATTCATTACCATCACCCACTGATGACAATGCCTGTAGGATTATTGGGAACCTAATTGCTGAGAGATGTAAAGAAGCTGATGTATTTGCAATGTCTTATGATCCTCCAAGCATGGAAAGAATTCAAGACAAAGTTGGAATTGTTATTGATACTATTAAGGAGAATGGTATTATATTTGTATAG

Coding sequence (CDS)

ATGTTGTTAAGCACGTCAATTCCCGAGTCATCGTCATCGGCAGCCACATTAGTCTCCAGTTTCCTTCACAAACCCACTTCTAGTTCATGGTCATCTTCTTTTTCCAAGCTCTCCATCTCCTTCGACGCCATTAAAGCACCTTCTCTTTCAACTCACAATACAAAGTTTTTGATTAAAGCAGCAGCCTGGACACGAAGATCTCGAGGAGAAGCTGCAAAAAGAGGGAATAAGAAATCATGGAAGCAAAGAACAGATATGTACATGAGACCTTTTGTTTTGGATGTTTACTTTTCAAGGAGGTTCATCCATGCCAAAGTGATGCATCGAGGAACAAGCAAGGTTGTTTCAGCAGCAAGCACTAATTGCAAGGATTTAAGGTATTCATTACCATCACCCACTGATGACAATGCCTGTAGGATTATTGGGAACCTAATTGCTGAGAGATGTAAAGAAGCTGATGTATTTGCAATGTCTTATGATCCTCCAAGCATGGAAAGAATTCAAGACAAAGTTGGAATTGTTATTGATACTATTAAGGAGAATGGTATTATATTTGTATAG

Protein sequence

MLLSTSIPESSSSAATLVSSFLHKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKFLIKAAAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKENGIIFV*

Homology

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BLAST of CsaV3_3G010320 vs. NCBI nr
Match: XP_011650830.1 (uncharacterized protein LOC101221429 [Cucumis sativus] >KGN56667.1 hypothetical protein Csa_010165 [Cucumis sativus])

HSP 1 Score: 358.6 bits (919), Expect = 3.3e-95
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MLLSTSIPESSSSAATLVSSFLHKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKFLIKA 60
           MLLSTSIPESSSSAATLVSSFLHKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKFLIKA
Sbjct: 1   MLLSTSIPESSSSAATLVSSFLHKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKFLIKA 60

Query: 61  AAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST 120
           AAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST
Sbjct: 61  AAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST 120

Query: 121 NCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKE 180
           NCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKE
Sbjct: 121 NCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKE 180

Query: 181 NGIIFV 187
           NGIIFV
Sbjct: 181 NGIIFV 186

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BLAST of CsaV3_3G010320 vs. NCBI nr
Match: XP_008438261.1 (PREDICTED: 50S ribosomal protein L18-like [Cucumis melo])

HSP 1 Score: 344.0 bits (881), Expect = 8.3e-91
Identity = 181/186 (97.31%), Postives = 183/186 (98.39%), Query Frame = 0


Query: 1   MLLSTSIPESSSSAATLVSSFLHKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKFLIKA 60
           MLLSTSIPESSSS ATL+SSFL KPTSSSWSSSFSKLSISFDAIKAPSLSTHNTK LIKA
Sbjct: 1   MLLSTSIPESSSS-ATLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKSLIKA 60

Query: 61  AAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST 120
           AAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST
Sbjct: 61  AAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST 120

Query: 121 NCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKE 180
           NCKDLRYSLPSP+DDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKE
Sbjct: 121 NCKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKE 180

Query: 181 NGIIFV 187
           NGIIFV
Sbjct: 181 NGIIFV 185

[Close]

BLAST of CsaV3_3G010320 vs. NCBI nr
Match: KAA0049096.1 (50S ribosomal protein L18-like [Cucumis melo var. makuwa] >TYK17467.1 50S ribosomal protein L18-like [Cucumis melo var. makuwa])

HSP 1 Score: 341.7 bits (875), Expect = 4.1e-90
Identity = 180/186 (96.77%), Postives = 182/186 (97.85%), Query Frame = 0


Query: 1   MLLSTSIPESSSSAATLVSSFLHKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKFLIKA 60
           MLLSTSIPESSSS ATL+SSFL KPTSSSWSSSFSKLSISFDAIKAPSLSTHNTK LIKA
Sbjct: 1   MLLSTSIPESSSS-ATLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKSLIKA 60

Query: 61  AAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST 120
           AAWTRRSRGEAAK GNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST
Sbjct: 61  AAWTRRSRGEAAKSGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST 120

Query: 121 NCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKE 180
           NCKDLRYSLPSP+DDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKE
Sbjct: 121 NCKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKE 180

Query: 181 NGIIFV 187
           NGIIFV
Sbjct: 181 NGIIFV 185

[Close]

BLAST of CsaV3_3G010320 vs. NCBI nr
Match: XP_038905466.1 (50S ribosomal protein L18-like [Benincasa hispida])

HSP 1 Score: 304.3 bits (778), Expect = 7.3e-79
Identity = 162/191 (84.82%), Postives = 173/191 (90.58%), Query Frame = 0


Query: 2   LLSTSIPESSSSA------ATLVSSFLHKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTK 61
           +LSTSIPESSSSA      ATL+S F+ KPTS SW SSFSKLSISF AIKAPSLSTH+ K
Sbjct: 1   MLSTSIPESSSSASAFRPTATLLSGFIQKPTSLSWPSSFSKLSISFVAIKAPSLSTHHRK 60

Query: 62  FLIKAAAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVV 121
            LI+ +AWTRRSRGEAAKRGN+KSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVV
Sbjct: 61  SLIQ-SAWTRRSRGEAAKRGNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVV 120

Query: 122 SAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVI 181
           SAASTNCKDLRYSL SPTD+NACRIIGNLIAERCKEADVF MSYDPP MERIQ K+GIVI
Sbjct: 121 SAASTNCKDLRYSLLSPTDENACRIIGNLIAERCKEADVFVMSYDPPDMERIQGKIGIVI 180

Query: 182 DTIKENGIIFV 187
           DTIK+NGI+FV
Sbjct: 181 DTIKKNGILFV 190

[Close]

BLAST of CsaV3_3G010320 vs. NCBI nr
Match: XP_022147050.1 (uncharacterized protein LOC111016081 [Momordica charantia])

HSP 1 Score: 271.6 bits (693), Expect = 5.2e-69
Identity = 144/192 (75.00%), Postives = 160/192 (83.33%), Query Frame = 0


Query: 2   LLSTSIPESSSSAAT-------LVSSFLHKPTSSSWSSSFSKLSISFDAIKAPSLSTHNT 61
           +LS +IPE  SS+A+       L++ F+ KPTS SW SSF KL ISFDAI AP  STH+ 
Sbjct: 1   MLSLTIPEPLSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHDR 60

Query: 62  KFLIKAAAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV 121
              I+ AAWTRRSRGEAAKR N+KSWKQRTDMYMRPFVLDV+FSRRFIHAKVMHR TSKV
Sbjct: 61  NSFIR-AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRATSKV 120

Query: 122 VSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIV 181
           VSAASTN KDLRYSLPSPTDDNACRIIGN+IAERCKEADVF MSY+PP  ERI+ K+ IV
Sbjct: 121 VSAASTNSKDLRYSLPSPTDDNACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIV 180

Query: 182 IDTIKENGIIFV 187
           IDTIKENGI+FV
Sbjct: 181 IDTIKENGILFV 191

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BLAST of CsaV3_3G010320 vs. ExPASy Swiss-Prot
Match: Q5P316 (50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=rplR PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.0e-06
Identity = 38/121 (31.40%), Postives = 63/121 (52.07%), Query Frame = 0


Query: 65  RRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKD 124
           RR+R   AK    KS +           L V+ +   I+A+V+    S+V++AAST   D
Sbjct: 9   RRARKTRAKIAELKSVR-----------LTVFRTNSHIYAQVIDGSGSRVLAAASTVEAD 68

Query: 125 LRYSLPSPTDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKENGII 184
           +R  LP+  +  A +++G LIAER K A V A+++D    +    +V  + +  +E G+ 
Sbjct: 69  VRSQLPNGGNKQAAQVVGKLIAERAKAAGVEAVAFDRAGFQ-YHGRVKALAEAAREGGLK 117

Query: 185 F 186
           F
Sbjct: 129 F 117

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BLAST of CsaV3_3G010320 vs. ExPASy Swiss-Prot
Match: B5ZYV1 (50S ribosomal protein L18 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) OX=395492 GN=rplR PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.1e-05
Identity = 40/120 (33.33%), Postives = 64/120 (53.33%), Query Frame = 0


Query: 67  SRGEA-AKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDL 126
           SR EA A+R N+     ++    RP  L V+ S + I+A+V+     K ++AAST  KDL
Sbjct: 3   SRKEALARRANRVRRHLKSVANGRP-RLSVHRSSKNIYAQVIDDVAGKTLAAASTLDKDL 62

Query: 127 RYSLPSPTDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKENGIIF 186
           R SL +  D  A  ++G L+AER  +A V  + +D  +      ++  + D  +E G+ F
Sbjct: 63  RGSLKTGADTAAAALVGKLVAERASKAGVTDVVFDRGAF-IYHGRIKALADAAREGGLTF 120

[Close]

BLAST of CsaV3_3G010320 vs. ExPASy Swiss-Prot
Match: A9BG02 (50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) OX=403833 GN=rplR PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.5e-05
Identity = 34/121 (28.10%), Postives = 64/121 (52.89%), Query Frame = 0


Query: 73  KRGNKKSWKQRTDMYMRPFV--------LDVYFSRRFIHAKVMHRGTSKVVSAASTNCKD 132
           K+ +KK+ +Q+  + +R  V        L V+ S++ I+A+++       +++AST  K 
Sbjct: 3   KQLDKKALRQKRHLRVRKNVRGTSEKPRLTVFKSQKHIYAQIIDDTKGVTLASASTTQKQ 62

Query: 133 LRYSLPSPTDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKENGII 186
           L+  L    D+NA + +G LIAE+ KE  +  + +D  S  +   KV  + +  +E G+ 
Sbjct: 63  LKEKLEKTWDENAAKEVGKLIAEKAKEKGITEIVFD-RSGYKYHGKVKALAEAARETGLK 122

[Close]

BLAST of CsaV3_3G010320 vs. ExPASy Swiss-Prot
Match: Q11HR8 (50S ribosomal protein L18 OS=Chelativorans sp. (strain BNC1) OX=266779 GN=rplR PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 7.2e-05
Identity = 31/93 (33.33%), Postives = 50/93 (53.76%), Query Frame = 0


Query: 93  LDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEA 152
           L VY S + I+A+V+       ++AAS+  KDLR  L +  D +A  ++G LIAER K+A
Sbjct: 28  LSVYRSSKHIYAQVIDDVKGHTLAAASSLDKDLREKLKTGADVDAAGVVGKLIAERAKKA 87

Query: 153 DVFAMSYDPPSMERIQDKVGIVIDTIKENGIIF 186
            +  + +D         +V  + D  +E G+ F
Sbjct: 88  GIDKVVFD-RGPYIYHGRVKALADAAREGGLEF 119

[Close]

BLAST of CsaV3_3G010320 vs. ExPASy Swiss-Prot
Match: B0U0X3 (50S ribosomal protein L18 OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017 / FSC 153 / O#319-036) OX=484022 GN=rplR PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 7.2e-05
Identity = 29/93 (31.18%), Postives = 53/93 (56.99%), Query Frame = 0


Query: 93  LDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEA 152
           L VY + R ++A+V+    S V++AAST  KD++       + N+  I+G +IA RCKE 
Sbjct: 26  LCVYRTPRHVYAQVISGDGSTVLAAASTVEKDVKAKCKYTGNVNSAAIVGEVIANRCKEK 85

Query: 153 DVFAMSYDPPSMERIQDKVGIVIDTIKENGIIF 186
            +  +++D  S  +   +V  + +  +E+G+ F
Sbjct: 86  GISQVAFD-RSGYKYHGRVKALAEAAREHGLQF 117

[Close]

BLAST of CsaV3_3G010320 vs. ExPASy TrEMBL
Match: A0A0A0L7S5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127780 PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 1.6e-95
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MLLSTSIPESSSSAATLVSSFLHKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKFLIKA 60
           MLLSTSIPESSSSAATLVSSFLHKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKFLIKA
Sbjct: 1   MLLSTSIPESSSSAATLVSSFLHKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKFLIKA 60

Query: 61  AAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST 120
           AAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST
Sbjct: 61  AAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST 120

Query: 121 NCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKE 180
           NCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKE
Sbjct: 121 NCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKE 180

Query: 181 NGIIFV 187
           NGIIFV
Sbjct: 181 NGIIFV 186

[Close]

BLAST of CsaV3_3G010320 vs. ExPASy TrEMBL
Match: A0A1S3AVM4 (50S ribosomal protein L18-like OS=Cucumis melo OX=3656 GN=LOC103483425 PE=4 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 4.0e-91
Identity = 181/186 (97.31%), Postives = 183/186 (98.39%), Query Frame = 0


Query: 1   MLLSTSIPESSSSAATLVSSFLHKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKFLIKA 60
           MLLSTSIPESSSS ATL+SSFL KPTSSSWSSSFSKLSISFDAIKAPSLSTHNTK LIKA
Sbjct: 1   MLLSTSIPESSSS-ATLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKSLIKA 60

Query: 61  AAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST 120
           AAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST
Sbjct: 61  AAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST 120

Query: 121 NCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKE 180
           NCKDLRYSLPSP+DDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKE
Sbjct: 121 NCKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKE 180

Query: 181 NGIIFV 187
           NGIIFV
Sbjct: 181 NGIIFV 185

[Close]

BLAST of CsaV3_3G010320 vs. ExPASy TrEMBL
Match: A0A5A7U4A4 (50S ribosomal protein L18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003310 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 2.0e-90
Identity = 180/186 (96.77%), Postives = 182/186 (97.85%), Query Frame = 0


Query: 1   MLLSTSIPESSSSAATLVSSFLHKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKFLIKA 60
           MLLSTSIPESSSS ATL+SSFL KPTSSSWSSSFSKLSISFDAIKAPSLSTHNTK LIKA
Sbjct: 1   MLLSTSIPESSSS-ATLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKSLIKA 60

Query: 61  AAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST 120
           AAWTRRSRGEAAK GNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST
Sbjct: 61  AAWTRRSRGEAAKSGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST 120

Query: 121 NCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKE 180
           NCKDLRYSLPSP+DDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKE
Sbjct: 121 NCKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKE 180

Query: 181 NGIIFV 187
           NGIIFV
Sbjct: 181 NGIIFV 185

[Close]

BLAST of CsaV3_3G010320 vs. ExPASy TrEMBL
Match: A0A6J1CZ23 (uncharacterized protein LOC111016081 OS=Momordica charantia OX=3673 GN=LOC111016081 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.5e-69
Identity = 144/192 (75.00%), Postives = 160/192 (83.33%), Query Frame = 0


Query: 2   LLSTSIPESSSSAAT-------LVSSFLHKPTSSSWSSSFSKLSISFDAIKAPSLSTHNT 61
           +LS +IPE  SS+A+       L++ F+ KPTS SW SSF KL ISFDAI AP  STH+ 
Sbjct: 1   MLSLTIPEPLSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHDR 60

Query: 62  KFLIKAAAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV 121
              I+ AAWTRRSRGEAAKR N+KSWKQRTDMYMRPFVLDV+FSRRFIHAKVMHR TSKV
Sbjct: 61  NSFIR-AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRATSKV 120

Query: 122 VSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIV 181
           VSAASTN KDLRYSLPSPTDDNACRIIGN+IAERCKEADVF MSY+PP  ERI+ K+ IV
Sbjct: 121 VSAASTNSKDLRYSLPSPTDDNACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIV 180

Query: 182 IDTIKENGIIFV 187
           IDTIKENGI+FV
Sbjct: 181 IDTIKENGILFV 191

[Close]

BLAST of CsaV3_3G010320 vs. ExPASy TrEMBL
Match: A0A6J1FBY3 (uncharacterized protein LOC111444022 OS=Cucurbita moschata OX=3662 GN=LOC111444022 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 4.8e-68
Identity = 146/192 (76.04%), Postives = 161/192 (83.85%), Query Frame = 0


Query: 3   LSTSIPESSS-------SAATLVSSFLHKPTSS-SWSSSFSKLSISFDAIKAPSLSTHNT 62
           LS+SIP SSS        +ATL+S F+ KPT+S SW SSFSKLSI   AIK PS STHN 
Sbjct: 4   LSSSIPGSSSWSASVHPPSATLLSGFIQKPTTSLSWPSSFSKLSI---AIKPPSPSTHNR 63

Query: 63  KFLIKAAAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV 122
             +I+ AAWTRRSRGE +KR N+KSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV
Sbjct: 64  NSIIQ-AAWTRRSRGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV 123

Query: 123 VSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIV 182
           VSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVF +SYDPP   +I+ K+ IV
Sbjct: 124 VSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIV 183

Query: 183 IDTIKENGIIFV 187
           ID IK+NGI+FV
Sbjct: 184 IDAIKDNGILFV 191

[Close]

BLAST of CsaV3_3G010320 vs. TAIR 10
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 196.4 bits (498), Expect = 2.0e-50
Identity = 104/174 (59.77%), Postives = 132/174 (75.86%), Query Frame = 0


Query: 13  SAATLVSSFLHKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKFLIKAAAWTRRSRGEAA 72
           S  T  + F    ++ SW SSF KLSI   ++ +  +   ++      AAWTRRSRGEAA
Sbjct: 16  SNLTRSNRFTKLGSAVSWQSSFPKLSIEIGSVISSPIVKKDS---FVQAAWTRRSRGEAA 75

Query: 73  KRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSP 132
           KR N+KSWKQRTDMYMRPF+L+V+FSR+FIHAKVMHR TSKV+S A+TN +D+R ++PS 
Sbjct: 76  KRPNRKSWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSL 135

Query: 133 TDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKENGIIFV 187
            D+ ACR+IG LIAER  EADV+A+SY+P   ERI+ K+GIVIDTIKE+GIIFV
Sbjct: 136 VDNEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGIIFV 186

[Close]

BLAST of CsaV3_3G010320 vs. TAIR 10
Match: AT1G08845.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 99.4 bits (246), Expect = 3.3e-21
Identity = 47/105 (44.76%), Postives = 68/105 (64.76%), Query Frame = 0


Query: 79  SWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNAC 138
           S+KQRT  YM PF LDV+ S+RF+ A + HR T + V+ A TN KD++  L S  D  AC
Sbjct: 78  SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPAC 137

Query: 139 RIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKENGI 184
             IG +++ER KEADV+  SY P   ++ + K+  V+ ++ +NGI
Sbjct: 138 MSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 182

[Close]

BLAST of CsaV3_3G010320 vs. TAIR 10
Match: AT1G08845.2 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 99.4 bits (246), Expect = 3.3e-21
Identity = 47/105 (44.76%), Postives = 68/105 (64.76%), Query Frame = 0


Query: 79  SWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNAC 138
           S+KQRT  YM PF LDV+ S+RF+ A + HR T + V+ A TN KD++  L S  D  AC
Sbjct: 123 SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPAC 182

Query: 139 RIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKENGI 184
             IG +++ER KEADV+  SY P   ++ + K+  V+ ++ +NGI
Sbjct: 183 MSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 227

[Close]

BLAST of CsaV3_3G010320 vs. TAIR 10
Match: AT3G22450.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 76.6 bits (187), Expect = 2.3e-14
Identity = 38/111 (34.23%), Postives = 66/111 (59.46%), Query Frame = 0


Query: 73  KRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSP 132
           KR    ++ Q T  +  PF LD+Y S+  + A V+HR TSKVV+ A +  KD+++ L S 
Sbjct: 180 KRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGSR 239

Query: 133 TDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKENGI 184
            +  AC  +G ++A+R  E D+  + Y P   ++I+ K+ +V+  + +NG+
Sbjct: 240 RNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGV 290

[Close]

BLAST of CsaV3_3G010320 vs. TAIR 10
Match: AT5G27820.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-11
Identity = 33/97 (34.02%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 87  YMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIA 146
           Y++P+VL ++F+ +F+HA+V+H  T+ V  +AS+  K LR ++    D  A   IG ++ 
Sbjct: 15  YLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDITRDVAAASKIGKILG 74

Query: 147 ERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKENGI 184
           ER    D+ A++      +R   KV  VID+++E G+
Sbjct: 75  ERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGV 111

The following BLAST results are available for this feature:

BLAST of CsaV3_3G010320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011650830.1	3.3e-95	100.00	uncharacterized protein LOC101221429 [Cucumis sativus] >KGN56667.1 hypothetical ...	[more]
XP_008438261.1	8.3e-91	97.31	PREDICTED: 50S ribosomal protein L18-like [Cucumis melo]	[more]
KAA0049096.1	4.1e-90	96.77	50S ribosomal protein L18-like [Cucumis melo var. makuwa] >TYK17467.1 50S riboso...	[more]
XP_038905466.1	7.3e-79	84.82	50S ribosomal protein L18-like [Benincasa hispida]	[more]
XP_022147050.1	5.2e-69	75.00	uncharacterized protein LOC111016081 [Momordica charantia]	[more]

BLAST of CsaV3_3G010320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5P316	5.0e-06	31.40	50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=rp...	[more]
B5ZYV1	1.1e-05	33.33	50S ribosomal protein L18 OS=Rhizobium leguminosarum bv. trifolii (strain WSM230...	[more]
A9BG02	2.5e-05	28.10	50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) OX=4038...	[more]
Q11HR8	7.2e-05	33.33	50S ribosomal protein L18 OS=Chelativorans sp. (strain BNC1) OX=266779 GN=rplR P...	[more]
B0U0X3	7.2e-05	31.18	50S ribosomal protein L18 OS=Francisella philomiragia subsp. philomiragia (strai...	[more]

BLAST of CsaV3_3G010320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7S5	1.6e-95	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127780 PE=4 SV=1	[more]
A0A1S3AVM4	4.0e-91	97.31	50S ribosomal protein L18-like OS=Cucumis melo OX=3656 GN=LOC103483425 PE=4 SV=1	[more]
A0A5A7U4A4	2.0e-90	96.77	50S ribosomal protein L18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A6J1CZ23	2.5e-69	75.00	uncharacterized protein LOC111016081 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1FBY3	4.8e-68	76.04	uncharacterized protein LOC111444022 OS=Cucurbita moschata OX=3662 GN=LOC1114440...	[more]

BLAST of CsaV3_3G010320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20230.1	2.0e-50	59.77	Ribosomal L18p/L5e family protein	[more]
AT1G08845.1	3.3e-21	44.76	Ribosomal L18p/L5e family protein	[more]
AT1G08845.2	3.3e-21	44.76	Ribosomal L18p/L5e family protein	[more]
AT3G22450.1	2.3e-14	34.23	Ribosomal L18p/L5e family protein	[more]
AT5G27820.1	1.1e-11	34.02	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 85..185 e-value: 3.5E-8 score: 33.8
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 19..185
IPR036967	Ribosomal protein S11 superfamily	GENE3D	3.30.420.80	Ribosomal protein S11	coord: 47..186 e-value: 9.4E-18 score: 66.5
None	No IPR available	PANTHER	PTHR12899:SF16	OS02G0689700 PROTEIN	coord: 19..185
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 80..183 e-value: 1.97636E-18 score: 74.4987
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 87..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G010320.1	CsaV3_3G010320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome