CsaV3_3G010110 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G010110
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	late embryogenesis abundant protein 6-like
Location	chr3: 8156297 .. 8157213 (-)
RNA-Seq Expression	CsaV3_3G010110
Synteny	CsaV3_3G010110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGCAGTTAGGGAGAAGCTACACGATATGAGCGTCATGCGCAAGGCCAAGGCCGAGGCAAAGGCCGAAGAGAAGGTGAGCTCTCGATGATGTTAGTTGTATTATTGAAAACATCTTCAATTCGAAAATATCATGAATACCTATTAATTGTTTTATCTTCCGTAACTAGTACTGTTTTTTTTATCCCTTTCGATTGAGATATACAACAATCGAGATTCAAATAAAAATTTAACATCTACATCTCACACTCAAACTCAAACTATCAACTTTTTTTTTTTATATAGAAATCATACACAATCTTTTCTTTTTTTTTCTTTTTTTTTGTATGTTTTCTAATTTTTTTATCAAATCCTCTCCGATATTTTTATTTTGTTCAATTATCTAAATTTCCTAATGAATTTACCACACATTCAAATGACTTTTTTAAATGGATATCGGGTGATTCACCATGTAATTTCTGTACAATCTCAAGTCATGCATCGTCCTAGTTGAGATCTCACCGAAAAAGCCCTATAGAGTAGTCATGCTAGTTATGACTATAGGAAAATGTCTTGCCCGAACAAAGATATTTGAGATTTGAACGATGAAATACAAGTTTTCATTTTATTTTAATGGTAAATGGGCAGGCAGAGAAGGAGCTAGCAAAAGCAAGAGTGGAAGTGGCTCATGAGGTAAGATTGGCACGAGAGGCTGAAGCTGCGATGGATCTTCATGTAGCCAAAGCTGGAATGAAGGCTGAGAAAGAGATGGCTAAGTATGCTGACACTCACACCAATACCTTTGTGTCTCCTGGCGGAACCACCACCCTTCCTGATTACTCCGTACCAGTAGCTCCCGGCATGACTATGGTTGGAGCCCCTGGCACCGTCGACATGGCCGGAGCTCCTTCTCCCGTTAATAAGAAGTTACTGTAA

mRNA sequence

ATGCAAGCAGTTAGGGAGAAGCTACACGATATGAGCGTCATGCGCAAGGCCAAGGCCGAGGCAAAGGCCGAAGAGAAGGCAGAGAAGGAGCTAGCAAAAGCAAGAGTGGAAGTGGCTCATGAGGTAAGATTGGCACGAGAGGCTGAAGCTGCGATGGATCTTCATGTAGCCAAAGCTGGAATGAAGGCTGAGAAAGAGATGGCTAAGTATGCTGACACTCACACCAATACCTTTGTGTCTCCTGGCGGAACCACCACCCTTCCTGATTACTCCGTACCAGTAGCTCCCGGCATGACTATGGTTGGAGCCCCTGGCACCGTCGACATGGCCGGAGCTCCTTCTCCCGTTAATAAGAAGTTACTGTAA

Coding sequence (CDS)

ATGCAAGCAGTTAGGGAGAAGCTACACGATATGAGCGTCATGCGCAAGGCCAAGGCCGAGGCAAAGGCCGAAGAGAAGGCAGAGAAGGAGCTAGCAAAAGCAAGAGTGGAAGTGGCTCATGAGGTAAGATTGGCACGAGAGGCTGAAGCTGCGATGGATCTTCATGTAGCCAAAGCTGGAATGAAGGCTGAGAAAGAGATGGCTAAGTATGCTGACACTCACACCAATACCTTTGTGTCTCCTGGCGGAACCACCACCCTTCCTGATTACTCCGTACCAGTAGCTCCCGGCATGACTATGGTTGGAGCCCCTGGCACCGTCGACATGGCCGGAGCTCCTTCTCCCGTTAATAAGAAGTTACTGTAA

Protein sequence

MQAVREKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAGMKAEKEMAKYADTHTNTFVSPGGTTTLPDYSVPVAPGMTMVGAPGTVDMAGAPSPVNKKLL*

Homology

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BLAST of CsaV3_3G010110 vs. NCBI nr
Match: XP_004134355.1 (late embryogenesis abundant protein 6 [Cucumis sativus] >KGN56644.1 hypothetical protein Csa_011484 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 2.4e-54
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MQAVREKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
           MQAVREKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG
Sbjct: 1   MQAVREKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MKAEKEMAKYADTHTNTFVSPGGTTTLPDYSVPVAPGMTMVGAPGTVDMAGAPSPVNKKL 120
           MKAEKEMAKYADTHTNTFVSPGGTTTLPDYSVPVAPGMTMVGAPGTVDMAGAPSPVNKKL
Sbjct: 61  MKAEKEMAKYADTHTNTFVSPGGTTTLPDYSVPVAPGMTMVGAPGTVDMAGAPSPVNKKL 120

Query: 121 L 122
           L
Sbjct: 121 L 121

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BLAST of CsaV3_3G010110 vs. NCBI nr
Match: XP_008438228.1 (PREDICTED: uncharacterized protein LOC103483397 [Cucumis melo] >KAA0049075.1 late embryogenesis abundant protein [Cucumis melo var. makuwa] >TYK17488.1 late embryogenesis abundant protein [Cucumis melo var. makuwa])

HSP 1 Score: 208.8 bits (530), Expect = 2.7e-50
Identity = 116/123 (94.31%), Postives = 118/123 (95.93%), Query Frame = 0


Query: 1   MQAVREKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
           MQAV+EKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG
Sbjct: 1   MQAVKEKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MKAEKEMAKYADTHTNTFVSPGGTTTLPDYS--VPVAPGMTMVGAPGTVDMAGAPSPVNK 120
           MKAEKEMAKYADTHTNTFV+PGGT T PDYS  VPVAPGMTMVGAPGTVDMAGAPSP NK
Sbjct: 61  MKAEKEMAKYADTHTNTFVAPGGTVTPPDYSANVPVAPGMTMVGAPGTVDMAGAPSPANK 120

Query: 121 KLL 122
           KLL
Sbjct: 121 KLL 123

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BLAST of CsaV3_3G010110 vs. NCBI nr
Match: XP_038878054.1 (late embryogenesis abundant protein 6-like [Benincasa hispida])

HSP 1 Score: 174.9 bits (442), Expect = 4.3e-40
Identity = 101/122 (82.79%), Postives = 111/122 (90.98%), Query Frame = 0


Query: 1   MQAVREKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
           MQAV++KLHD+SVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG
Sbjct: 1   MQAVKDKLHDISVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MKAEKEMAKYADTHTNTFVSPGGTTTLP-DYSVPVAPGMTMVGAPGTVDMAGAPSPVNKK 120
           MKAEKEM KYA+THT+TFV+PGGT  L     + VAPG+T+V APGTV+MAGAP PVNKK
Sbjct: 61  MKAEKEMTKYANTHTHTFVAPGGTAALDCTADMAVAPGVTIVNAPGTVNMAGAP-PVNKK 120

Query: 121 LL 122
           LL
Sbjct: 121 LL 121

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BLAST of CsaV3_3G010110 vs. NCBI nr
Match: XP_022924652.1 (late embryogenesis abundant protein 6-like [Cucurbita moschata] >XP_022924653.1 late embryogenesis abundant protein 6-like [Cucurbita moschata] >KAG6582534.1 Late embryogenesis abundant protein 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 158.7 bits (400), Expect = 3.2e-35
Identity = 95/122 (77.87%), Postives = 106/122 (86.89%), Query Frame = 0


Query: 1   MQAVREKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
           MQAVR+KLHD++ MRKAK+EAKAEEKAEKELAKARVEVAHEVRLAREAEAAM LHVAKAG
Sbjct: 1   MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG 60

Query: 61  MKAEKEMAKYADTHTNTFVSPG-GTTTLPDYSVPVAPGMTMVGAPGTVDMAGAPSPVNKK 120
            +AEKEMAK+A+ HTN FV+PG GTTT    +V  APG+TMVGAPGTVDMAG P  V+KK
Sbjct: 61  KRAEKEMAKHANAHTNIFVAPGDGTTT----NVATAPGVTMVGAPGTVDMAG-PHTVHKK 117

Query: 121 LL 122
            L
Sbjct: 121 TL 117

[Close]

BLAST of CsaV3_3G010110 vs. NCBI nr
Match: XP_023526293.1 (late embryogenesis abundant protein 6-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 158.3 bits (399), Expect = 4.2e-35
Identity = 95/122 (77.87%), Postives = 105/122 (86.07%), Query Frame = 0


Query: 1   MQAVREKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
           MQAVR+KLHD++ MRKAK+EAKAEEKAEKELAKARVEVAHEVRLAREAEAAM LHVAKAG
Sbjct: 1   MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG 60

Query: 61  MKAEKEMAKYADTHTNTFVSPG-GTTTLPDYSVPVAPGMTMVGAPGTVDMAGAPSPVNKK 120
            +AEKEMAK+A+THTN FV+PG GTTT     V  APG+TMVGAPGTVDM G P  V+KK
Sbjct: 61  KRAEKEMAKHANTHTNIFVAPGDGTTT----RVATAPGVTMVGAPGTVDMVG-PHTVHKK 117

Query: 121 LL 122
            L
Sbjct: 121 TL 117

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BLAST of CsaV3_3G010110 vs. ExPASy Swiss-Prot
Match: Q39138 (Late embryogenesis abundant protein 6 OS=Arabidopsis thaliana OX=3702 GN=LEA6 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.2e-05
Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 1  MQAVREKLHDMSVMRKAK---AEAKAEEKAEKELA--KARVEVAHEVRLAREAEAAMDLH 60
          MQ+ ++K+ DM+   K K    +AKA+EKAE+ +A  K   E+AH+ R A+EAEA MD+H
Sbjct: 1  MQSAKQKISDMASTAKEKMVICQAKADEKAERAMARTKEEKEIAHQRRKAKEAEANMDMH 60

Query: 61 VAKAGMKAEKEMAKYADTH 75
          +AKA    +K MAK +  H
Sbjct: 61 MAKAAHAEDKLMAKQSHYH 79

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BLAST of CsaV3_3G010110 vs. ExPASy TrEMBL
Match: A0A0A0L6I7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127070 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.1e-54
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MQAVREKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
           MQAVREKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG
Sbjct: 1   MQAVREKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MKAEKEMAKYADTHTNTFVSPGGTTTLPDYSVPVAPGMTMVGAPGTVDMAGAPSPVNKKL 120
           MKAEKEMAKYADTHTNTFVSPGGTTTLPDYSVPVAPGMTMVGAPGTVDMAGAPSPVNKKL
Sbjct: 61  MKAEKEMAKYADTHTNTFVSPGGTTTLPDYSVPVAPGMTMVGAPGTVDMAGAPSPVNKKL 120

Query: 121 L 122
           L
Sbjct: 121 L 121

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BLAST of CsaV3_3G010110 vs. ExPASy TrEMBL
Match: A0A5A7U624 (Late embryogenesis abundant protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003530 PE=3 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.3e-50
Identity = 116/123 (94.31%), Postives = 118/123 (95.93%), Query Frame = 0


Query: 1   MQAVREKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
           MQAV+EKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG
Sbjct: 1   MQAVKEKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MKAEKEMAKYADTHTNTFVSPGGTTTLPDYS--VPVAPGMTMVGAPGTVDMAGAPSPVNK 120
           MKAEKEMAKYADTHTNTFV+PGGT T PDYS  VPVAPGMTMVGAPGTVDMAGAPSP NK
Sbjct: 61  MKAEKEMAKYADTHTNTFVAPGGTVTPPDYSANVPVAPGMTMVGAPGTVDMAGAPSPANK 120

Query: 121 KLL 122
           KLL
Sbjct: 121 KLL 123

[Close]

BLAST of CsaV3_3G010110 vs. ExPASy TrEMBL
Match: A0A1S3AWI7 (uncharacterized protein LOC103483397 OS=Cucumis melo OX=3656 GN=LOC103483397 PE=3 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.3e-50
Identity = 116/123 (94.31%), Postives = 118/123 (95.93%), Query Frame = 0


Query: 1   MQAVREKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
           MQAV+EKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG
Sbjct: 1   MQAVKEKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MKAEKEMAKYADTHTNTFVSPGGTTTLPDYS--VPVAPGMTMVGAPGTVDMAGAPSPVNK 120
           MKAEKEMAKYADTHTNTFV+PGGT T PDYS  VPVAPGMTMVGAPGTVDMAGAPSP NK
Sbjct: 61  MKAEKEMAKYADTHTNTFVAPGGTVTPPDYSANVPVAPGMTMVGAPGTVDMAGAPSPANK 120

Query: 121 KLL 122
           KLL
Sbjct: 121 KLL 123

[Close]

BLAST of CsaV3_3G010110 vs. ExPASy TrEMBL
Match: A0A6J1ED39 (late embryogenesis abundant protein 6-like OS=Cucurbita moschata OX=3662 GN=LOC111432084 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.6e-35
Identity = 95/122 (77.87%), Postives = 106/122 (86.89%), Query Frame = 0


Query: 1   MQAVREKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
           MQAVR+KLHD++ MRKAK+EAKAEEKAEKELAKARVEVAHEVRLAREAEAAM LHVAKAG
Sbjct: 1   MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG 60

Query: 61  MKAEKEMAKYADTHTNTFVSPG-GTTTLPDYSVPVAPGMTMVGAPGTVDMAGAPSPVNKK 120
            +AEKEMAK+A+ HTN FV+PG GTTT    +V  APG+TMVGAPGTVDMAG P  V+KK
Sbjct: 61  KRAEKEMAKHANAHTNIFVAPGDGTTT----NVATAPGVTMVGAPGTVDMAG-PHTVHKK 117

Query: 121 LL 122
            L
Sbjct: 121 TL 117

[Close]

BLAST of CsaV3_3G010110 vs. ExPASy TrEMBL
Match: A0A6J1IRE5 (late embryogenesis abundant protein 6-like OS=Cucurbita maxima OX=3661 GN=LOC111479813 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.5e-35
Identity = 94/122 (77.05%), Postives = 105/122 (86.07%), Query Frame = 0


Query: 1   MQAVREKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60
           MQAVR+KLHD++ MRKAK+EAKAEEKAEKELAKARVEVAHEVRLAREAEAAM LHVAKAG
Sbjct: 1   MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG 60

Query: 61  MKAEKEMAKYADTHTNTFVSPG-GTTTLPDYSVPVAPGMTMVGAPGTVDMAGAPSPVNKK 120
            +AEKEMAK+A+ HTN FV+PG GTTT    +V  APG+TMVGAPGTVDM G P  V+KK
Sbjct: 61  KRAEKEMAKHANAHTNIFVAPGDGTTT----NVATAPGVTMVGAPGTVDMVG-PHTVHKK 117

Query: 121 LL 122
            L
Sbjct: 121 TL 117

[Close]

BLAST of CsaV3_3G010110 vs. TAIR 10
Match: AT1G32560.1 (Late embryogenesis abundant protein, group 1 protein )

HSP 1 Score: 50.8 bits (120), Expect = 8.8e-07
Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 1  MQAVREKLHDMSVMRKAK---AEAKAEEKAEKELA--KARVEVAHEVRLAREAEAAMDLH 60
          MQ+ ++K+ DM+   K K    +AKA+EKAE+ +A  K   E+AH+ R A+EAEA MD+H
Sbjct: 1  MQSAKQKISDMASTAKEKMVICQAKADEKAERAMARTKEEKEIAHQRRKAKEAEANMDMH 60

Query: 61 VAKAGMKAEKEMAKYADTH 75
          +AKA    +K MAK +  H
Sbjct: 61 MAKAAHAEDKLMAKQSHYH 79

The following BLAST results are available for this feature:

BLAST of CsaV3_3G010110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134355.1	2.4e-54	100.00	late embryogenesis abundant protein 6 [Cucumis sativus] >KGN56644.1 hypothetical...	[more]
XP_008438228.1	2.7e-50	94.31	PREDICTED: uncharacterized protein LOC103483397 [Cucumis melo] >KAA0049075.1 lat...	[more]
XP_038878054.1	4.3e-40	82.79	late embryogenesis abundant protein 6-like [Benincasa hispida]	[more]
XP_022924652.1	3.2e-35	77.87	late embryogenesis abundant protein 6-like [Cucurbita moschata] >XP_022924653.1 ...	[more]
XP_023526293.1	4.2e-35	77.87	late embryogenesis abundant protein 6-like isoform X2 [Cucurbita pepo subsp. pep...	[more]

BLAST of CsaV3_3G010110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39138	1.2e-05	45.57	Late embryogenesis abundant protein 6 OS=Arabidopsis thaliana OX=3702 GN=LEA6 PE...	[more]

BLAST of CsaV3_3G010110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6I7	1.1e-54	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127070 PE=3 SV=1	[more]
A0A5A7U624	1.3e-50	94.31	Late embryogenesis abundant protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3AWI7	1.3e-50	94.31	uncharacterized protein LOC103483397 OS=Cucumis melo OX=3656 GN=LOC103483397 PE=...	[more]
A0A6J1ED39	1.6e-35	77.87	late embryogenesis abundant protein 6-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1IRE5	4.5e-35	77.05	late embryogenesis abundant protein 6-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of CsaV3_3G010110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32560.1	8.8e-07	45.57	Late embryogenesis abundant protein, group 1 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 14..37
None	No IPR available	PANTHER	PTHR33493:SF3	LATE EMBRYOGENESIS ABUNDANT PROTEIN	coord: 1..83
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PFAM	PF03760	LEA_1	coord: 1..66 e-value: 7.0E-14 score: 52.2
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PANTHER	PTHR33493	LATE EMBRYOGENESIS ABUNDANT PROTEIN 6-RELATED	coord: 1..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G010110.1	CsaV3_3G010110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy