CsaV3_3G009900 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G009900
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	SWIB domain-containing protein
Location	chr3: 8029339 .. 8032325 (+)
RNA-Seq Expression	CsaV3_3G009900
Synteny	CsaV3_3G009900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTAATAGACTCAAGTTAAAATGAAGTATCTCGGTAAAGGTAAAATAATACAAAAGAAGTTTCTCTAATGAAAAGCATTTAAGGAGGCAATTCCCTCCCTTAGGGCAAGGGAATGGTCCAAAGGGAGTCCAAATTTCACGTTGTTTCTCCCTTGGTATCGCGGCGAGTTTTCCCCGATTCATCTCCTCCACTGAACCCTCCGCAGGAAACAGACTGCAAGAACCGAGCGAGTAACAATGTCGTCTGGATTCAACAATGGCATAAGGGTTTTCAGAGCCTGTAGAGCTCTCTTAGCTCCGTCCAAATCCTCTGCTACCGTTCCCGCCACCGCTCCCAAATCCAAGACGACCTCGAAGCTGGAGCCGAAGCCGAAGCTGCCCAAGGTGAAGACTCCTCCGAGCTCCGTTGCTGCTGGTGTTGCAGCCACGCCCGAGCCGAAAATAAAAAAGGAAATGTCTCGACCGTCGGGGATTCTGAAGGTCACTCAGGTTTCTCCAGCGTTGAGCAACTTCTTGGGTGTATCGGAGGCTTCTCGCAGCGATGCCGTCACGCAGATCTGGTCTTACATAAAGCTCCACAACCTTCAGGTTTGTAGCTTATAACCATTTTGGTTTCTAGGCCATTGGGTGGAAAAATGGACGTGCAAATAGGCTATAGTGCACCTCCAACTTCCAATCCAGAAATTGCATCAACTAACAGACACTAGTTAACCTCTAAACTGAAATCTACGGTTTCTCTCCCCGCCGCAATGGGGGTCATTTAGTTTTTCCGATGAGGAAAGGTTTAGTAATCTGAAGGAAAATGGAGTATGGAGGTTTCACTGGTGCTCCCAATGCTTATTATTGCTGAGGTTGAGGAACCGGTTTTCTCCATGATCCAGGTAGATGCAAAGCCATCTGAGGAATTCTTTTTTCGTTCCTAAAAAGGAAACGTTAATCCTTAAACTGAAATCTATGGTTTCTCTCCCCGTCGCAATGGGGTCCATTAAGTTTTTCCGACGAGGAAAAGTTCAATTATCTGAAGGACAATGGATTATGGAGGTTTCATCCATAACTGGCGCTCCCAATGCTTATTATTGCTGAGGTCGAGGAACCAGTTTTCTCCATCCAGATAGATGCACACTTTTCTGAGGAATTATTTTTTTGTTCCAAAAAAAGAAAAGTTAACCTTTGAACTGAGATCCATGGTTTCTCTCCCCGCCGCAATGGGGGCCATTAAGTTTTTTCGATGAGGAAAGGTTTAGTAATCAGAAGGAAAATGGAGTATGGAGGTTTCATCCAAAACTGGTGCTCCCAATGCTTATTGTTGCTGAGGTTGAGGAACCAGTTATCTCCATGATCCAGGTAGATGCAAAGCCATCTGAGGAATTATTTTTTCGTTCCAAAAAAAGAAAAGTTAACCTTTAAACTGAGATCTATGGTTTCTCTCCGGGCTGCAATGGGGGCCATTAAGTTTTTCCGAAGAGGAAAAGTTAATTTGAAGGAAAATGGAGTATGGAGGTTTCATCCATAACTGGCGCTCCCAATGCTTATTATTGCTGAGGTCGAGAACCACTTTTCTCCATGATCCAGGTAGATGCAAAGCCATCTGAGGAATTATATTTTCGTTCCAAAAAAAGAAAAGTTCACCTTTAAACTGAGATGGGATCTTTACGGGAAGTACTTGTTACCTTGTTGGACCTTATCTAAATTGTGTAATGGCAAACTGTGCTTGTATGGTAAATTCCCCGTGTTCTTTCTTGAACTTTGGGGGATGAAAATCAAATTTCATGAGCTCTCTTGAACCTTTAGAATTGAGAATCTTTTGGTCTCTAGATTTGGAATATCTACACGATGGACTCTTGGTGATATAAGTTGACTTCTGGGCATTGACAATCCCCTCCATTTTTTGATGAGAATGCTGAACTCTTAAAAGGTTGAAACACTTGATATAGAGATTATATTACACAGCAGGTTCAAATACTACTTTGGTCCTTGCTTGGTCATACTCGCCAAAGTATAGAGACTAGAGCAAACATTTTGAAATTATAGGTACGAAAATAAGCCACAGTCCATAGTTGAAAGTATAAAGATCGGAAGGACTCATAGTTGAATGTATAGGGTCCAAAATGAACCAAAACCAAAAAGTGTAAGGTCCAAAGTAGTATATAGTAATAGTATTACTCTATAAATTGTTGAAATTGATATTTTATTCAAGAAATATCTGGTACTGAACCCTATAATTTATTTGTGAGCTCGACAGTTAAGCCAGAGTTAACATAACTTGAAGATGTTATTCTTTTGGAATGTTCATTCATTCATGTAAAGTTAGTTGTGGATTCCTTCTGTAGGCTTATTTTTTTGTCTCTCTATTTTTGTATTCATTTGTACATTCTTTCACTCTGAGTTTCTTCCCTATGACATGAAATATTTTACTTAAAATTTCTGGTGGAACTTTATGAGCTGCACGCAATTACCCATAGTTTTCAAAGAAAAAACAAACGGCTTACGATATATTTCATTGTCGTCGCCTGCAGAATCCTGATAACAAAAGAGAGATCTACTGCGACGATAAACTTAAAGCCATATTCGAAGGAAGGGAAAAGGTTGGTTTCTTAGAGATCGGGAAATCTCTCGCACGCCATTTTGTAAAGAACTGATGCAGGTGATGAGAGATCAACTTTCAATCCCTGTTCTAACTTACTTTTTCAATCCTTTTAGTTAGCAATAGTCTTGTTTAGGTAACATTGATGAACTTCTCCCCAATGTGATGTCCAGTAAGTTTGTAAAAAGGATAAACACCAAAGTAGATGGCTTCCATTTTCTTCACAAGTTGAAGCCTTCTTTTCCCTAATCAGATTGTACATTTTGTGTTGTATGGTGCTTCCACATATTTTGTTTCAGCTCCAAATCATATTAATGGATGAAATATAAATGTAAAAAAATACAAGATGTCAATGAATTGTTTTTATTACAAATAGGATGAAGGATCCAATTTTGAATATTCA

mRNA sequence

ATGTCGTCTGGATTCAACAATGGCATAAGGGTTTTCAGAGCCTGTAGAGCTCTCTTAGCTCCGTCCAAATCCTCTGCTACCGTTCCCGCCACCGCTCCCAAATCCAAGACGACCTCGAAGCTGGAGCCGAAGCCGAAGCTGCCCAAGGTGAAGACTCCTCCGAGCTCCGTTGCTGCTGGTGTTGCAGCCACGCCCGAGCCGAAAATAAAAAAGGAAATGTCTCGACCGTCGGGGATTCTGAAGGTCACTCAGGTTTCTCCAGCGTTGAGCAACTTCTTGGGTGTATCGGAGGCTTCTCGCAGCGATGCCGTCACGCAGATCTGGTCTTACATAAAGCTCCACAACCTTCAGAATCCTGATAACAAAAGAGAGATCTACTGCGACGATAAACTTAAAGCCATATTCGAAGGAAGGGAAAAGGTTGGTTTCTTAGAGATCGGGAAATCTCTCGCACGCCATTTTGTAAAGAACTGA

Coding sequence (CDS)

ATGTCGTCTGGATTCAACAATGGCATAAGGGTTTTCAGAGCCTGTAGAGCTCTCTTAGCTCCGTCCAAATCCTCTGCTACCGTTCCCGCCACCGCTCCCAAATCCAAGACGACCTCGAAGCTGGAGCCGAAGCCGAAGCTGCCCAAGGTGAAGACTCCTCCGAGCTCCGTTGCTGCTGGTGTTGCAGCCACGCCCGAGCCGAAAATAAAAAAGGAAATGTCTCGACCGTCGGGGATTCTGAAGGTCACTCAGGTTTCTCCAGCGTTGAGCAACTTCTTGGGTGTATCGGAGGCTTCTCGCAGCGATGCCGTCACGCAGATCTGGTCTTACATAAAGCTCCACAACCTTCAGAATCCTGATAACAAAAGAGAGATCTACTGCGACGATAAACTTAAAGCCATATTCGAAGGAAGGGAAAAGGTTGGTTTCTTAGAGATCGGGAAATCTCTCGCACGCCATTTTGTAAAGAACTGA

Protein sequence

MSSGFNNGIRVFRACRALLAPSKSSATVPATAPKSKTTSKLEPKPKLPKVKTPPSSVAAGVAATPEPKIKKEMSRPSGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNPDNKREIYCDDKLKAIFEGREKVGFLEIGKSLARHFVKN*

Homology

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BLAST of CsaV3_3G009900 vs. NCBI nr
Match: XP_004133931.1 (upstream activation factor subunit spp27 [Cucumis sativus] >KGN56620.1 hypothetical protein Csa_011434 [Cucumis sativus])

HSP 1 Score: 302.8 bits (774), Expect = 1.8e-78
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MSSGFNNGIRVFRACRALLAPSKSSATVPATAPKSKTTSKLEPKPKLPKVKTPPSSVAAG 60
           MSSGFNNGIRVFRACRALLAPSKSSATVPATAPKSKTTSKLEPKPKLPKVKTPPSSVAAG
Sbjct: 1   MSSGFNNGIRVFRACRALLAPSKSSATVPATAPKSKTTSKLEPKPKLPKVKTPPSSVAAG 60

Query: 61  VAATPEPKIKKEMSRPSGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNPD 120
           VAATPEPKIKKEMSRPSGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNPD
Sbjct: 61  VAATPEPKIKKEMSRPSGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNPD 120

Query: 121 NKREIYCDDKLKAIFEGREKVGFLEIGKSLARHFVKN 158
           NKREIYCDDKLKAIFEGREKVGFLEIGKSLARHFVKN
Sbjct: 121 NKREIYCDDKLKAIFEGREKVGFLEIGKSLARHFVKN 157

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BLAST of CsaV3_3G009900 vs. NCBI nr
Match: XP_008438197.1 (PREDICTED: upstream activation factor subunit UAF30-like [Cucumis melo] >XP_008438198.1 PREDICTED: upstream activation factor subunit UAF30-like [Cucumis melo])

HSP 1 Score: 272.7 bits (696), Expect = 2.0e-69
Identity = 146/158 (92.41%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 1   MSSGFNNGIRVFRACRALLAPSKSSATVPATAPKSKTTSKLEPKPKLPKVKTPPSSV-AA 60
           MSSGFNNG+RVFRACR LLAPSKSSATVPATAPKSKTT+K  PK KLPKVKTPPSSV AA
Sbjct: 1   MSSGFNNGLRVFRACRTLLAPSKSSATVPATAPKSKTTTK--PKTKLPKVKTPPSSVAAA 60

Query: 61  GVAATPEPKIKKEMSRPSGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNP 120
           GVAATPEPKIKK  SRPSGILKVTQVSPALSNFLGVSEASR+DAVTQIWSYIKLHNLQNP
Sbjct: 61  GVAATPEPKIKKGTSRPSGILKVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNP 120

Query: 121 DNKREIYCDDKLKAIFEGREKVGFLEIGKSLARHFVKN 158
           DNKREIYCDDKLKAIFEGREKV FLEIGK LARHFVKN
Sbjct: 121 DNKREIYCDDKLKAIFEGREKVSFLEIGKMLARHFVKN 156

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BLAST of CsaV3_3G009900 vs. NCBI nr
Match: XP_038877222.1 (upstream activation factor subunit UAF30 [Benincasa hispida] >XP_038877226.1 upstream activation factor subunit UAF30 [Benincasa hispida])

HSP 1 Score: 246.9 bits (629), Expect = 1.2e-61
Identity = 134/157 (85.35%), Postives = 142/157 (90.45%), Query Frame = 0


Query: 1   MSSGFNNGIRVFRACRALLAPSKSSATVPATAPKSKTTSKLEPKPKLPKVKTPPSSVAAG 60
           MSSGF+NGIRVFRACRALLAPSKSSATV ATA KS TTSK  PKPK  KVKTPP+S  A 
Sbjct: 1   MSSGFSNGIRVFRACRALLAPSKSSATVAATAAKSNTTSK--PKPK-SKVKTPPTSDTAD 60

Query: 61  VAATPEPKIKKEMSRPSGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNPD 120
           V+ATP+PKIK+E++RP+GILKVTQVSPALSNFLGVSEASR DAV QIWSYIKLHNLQNP 
Sbjct: 61  VSATPKPKIKREITRPTGILKVTQVSPALSNFLGVSEASRIDAVKQIWSYIKLHNLQNPA 120

Query: 121 NKREIYCDDKLKAIFEGREKVGFLEIGKSLARHFVKN 158
           NKREIYCDDKLKAIFEGREKVGFLEIGK LA HFVKN
Sbjct: 121 NKREIYCDDKLKAIFEGREKVGFLEIGKLLAHHFVKN 154

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BLAST of CsaV3_3G009900 vs. NCBI nr
Match: XP_022980440.1 (protein TRI1-like [Cucurbita maxima])

HSP 1 Score: 228.0 bits (580), Expect = 5.6e-56
Identity = 123/157 (78.34%), Postives = 132/157 (84.08%), Query Frame = 0


Query: 1   MSSGFNNGIRVFRACRALLAPSKSSATVPATAPKSKTTSKLEPKPKLPKVKTPPSSVAAG 60
           MSSGF+NGIRVFR CRALLAPSKSSATVP  A KS+TTSK   +   PK KTPP S  A 
Sbjct: 1   MSSGFSNGIRVFRGCRALLAPSKSSATVPPAAVKSRTTSKSNTE---PKEKTPPRSDVA- 60

Query: 61  VAATPEPKIKKEMSRPSGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNPD 120
            AA P+PK+K+EM+R +G LKV QVSPAL NFLGVSEASR+DAV QIWSYIKLHNLQNP 
Sbjct: 61  AAAAPKPKVKREMTRSTGFLKVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPA 120

Query: 121 NKREIYCDDKLKAIFEGREKVGFLEIGKSLARHFVKN 158
           NKREIYCDDKLKAIFEGREKVGFLEIGK L RHFVKN
Sbjct: 121 NKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 153

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BLAST of CsaV3_3G009900 vs. NCBI nr
Match: XP_022924718.1 (upstream activation factor subunit spp27-like [Cucurbita moschata])

HSP 1 Score: 224.6 bits (571), Expect = 6.2e-55
Identity = 121/157 (77.07%), Postives = 131/157 (83.44%), Query Frame = 0


Query: 1   MSSGFNNGIRVFRACRALLAPSKSSATVPATAPKSKTTSKLEPKPKLPKVKTPPSSVAAG 60
           MSSGF+NGIRVFR C +LLAP KSSATVP TA KSKT SK   +   PK KTPP S  A 
Sbjct: 1   MSSGFSNGIRVFRGCTSLLAPLKSSATVPPTAVKSKTISKSNAE---PKEKTPPRSDVA- 60

Query: 61  VAATPEPKIKKEMSRPSGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNPD 120
            AA P+PK ++EM+RP+G+LKV QVSPAL NFLGVSEASR+DAV QIWSYIKLHNLQNP 
Sbjct: 61  AAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPS 120

Query: 121 NKREIYCDDKLKAIFEGREKVGFLEIGKSLARHFVKN 158
           NKREIYCDDKLKAIFEGREKVGFLEIGK L RHFVKN
Sbjct: 121 NKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 153

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BLAST of CsaV3_3G009900 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.8e-10
Identity = 37/88 (42.05%), Postives = 50/88 (56.82%), Query Frame = 0


Query: 68  KIKKEMSRPSGILKVTQV--SPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNPDNKREI 127
           K KK  S  S  + V +V  S  L  FLG  E  R+  V  IW YIK H+LQNP ++REI
Sbjct: 107 KKKKNDSPDSNSISVRKVLLSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREI 166

Query: 128 YCDDKLKAIFEGREKVGFLEIGKSLARH 154
            CD+K++ IF   +K+    + K L +H
Sbjct: 167 LCDEKMEPIF--GKKMTMFSMNKLLTKH 192

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BLAST of CsaV3_3G009900 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.3e-09
Identity = 42/119 (35.29%), Postives = 63/119 (52.94%), Query Frame = 0


Query: 20  APSKSSATVPATAPKSKTTSKLEPKPKLPKVKTPPSSVAAGVAATPEPKIKKEMSRPSG- 79
           APS+   ++   AP  KT  K   +    + K P            E   +K    P+  
Sbjct: 57  APSEKE-SLEKQAPARKTKGKRATENGTEEGKKPAKRTRKRKEDGEEGGKRKRNQDPANN 116

Query: 80  -ILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNPDNKREIYCDDKLKAIFE 137
            + K  ++SP L+ FLG+ + SR   V ++W YIK H+LQ+P++KR I CDDKLK++FE
Sbjct: 117 PLNKPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFE 174

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BLAST of CsaV3_3G009900 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.0e-09
Identity = 46/134 (34.33%), Postives = 68/134 (50.75%), Query Frame = 0


Query: 23  KSSATVPATAPKSKTTSKLEPKPKLPKVKTPPSSVAAGVAATPEPKIKKEMSRPSGILKV 82
           K +AT+     K  T SK     +    +T  + V        E K       P    KV
Sbjct: 73  KENATLAIELTKEITVSKRSSGEEKNDSETKGTHV--------EKKKGTVSKSPISTRKV 132

Query: 83  TQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNPDNKREIYCDDKLKAIFEGREKVG 142
           T +S +L++ LG  E +R++ V ++W+YIK HNLQNP+NK+EI CD+KL+ I    +   
Sbjct: 133 T-LSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELIL--GKSTN 192

Query: 143 FLEIGKSLARHFVK 157
             E+ K LA H  +
Sbjct: 193 MFEMHKILASHMTE 195

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BLAST of CsaV3_3G009900 vs. ExPASy Swiss-Prot
Match: Q9P7S3 (SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ssr3 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.8e-07
Identity = 24/53 (45.28%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 84  QVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNPDNKREIYCDDKLKAIFE 137
           ++S A +N LG+ E +R D V+ +W YIK H LQ+ + KR I CD  L+ +FE
Sbjct: 207 KLSKAFANILGIREGTRPDIVSYLWQYIKFHRLQDMEEKRLINCDKALRDLFE 259

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BLAST of CsaV3_3G009900 vs. ExPASy Swiss-Prot
Match: Q9FMT4 (SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g14170 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.2e-05
Identity = 23/70 (32.86%), Postives = 39/70 (55.71%), Query Frame = 0


Query: 84  QVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNPDNKREIYCDDKLKAIFEGREKVGF 143
           ++S AL + LG+   +R   +  IW Y+K   LQNP++     CD  L+ +F G EK+ F
Sbjct: 320 KLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVF-GEEKLKF 379

Query: 144 LEIGKSLARH 154
             + + ++ H
Sbjct: 380 TMVSQKISHH 388

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BLAST of CsaV3_3G009900 vs. ExPASy TrEMBL
Match: A0A0A0L3V0 (SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G126840 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 8.7e-79
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MSSGFNNGIRVFRACRALLAPSKSSATVPATAPKSKTTSKLEPKPKLPKVKTPPSSVAAG 60
           MSSGFNNGIRVFRACRALLAPSKSSATVPATAPKSKTTSKLEPKPKLPKVKTPPSSVAAG
Sbjct: 1   MSSGFNNGIRVFRACRALLAPSKSSATVPATAPKSKTTSKLEPKPKLPKVKTPPSSVAAG 60

Query: 61  VAATPEPKIKKEMSRPSGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNPD 120
           VAATPEPKIKKEMSRPSGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNPD
Sbjct: 61  VAATPEPKIKKEMSRPSGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNPD 120

Query: 121 NKREIYCDDKLKAIFEGREKVGFLEIGKSLARHFVKN 158
           NKREIYCDDKLKAIFEGREKVGFLEIGKSLARHFVKN
Sbjct: 121 NKREIYCDDKLKAIFEGREKVGFLEIGKSLARHFVKN 157

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BLAST of CsaV3_3G009900 vs. ExPASy TrEMBL
Match: A0A1S3AVG6 (upstream activation factor subunit UAF30-like OS=Cucumis melo OX=3656 GN=LOC103483375 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 9.6e-70
Identity = 146/158 (92.41%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 1   MSSGFNNGIRVFRACRALLAPSKSSATVPATAPKSKTTSKLEPKPKLPKVKTPPSSV-AA 60
           MSSGFNNG+RVFRACR LLAPSKSSATVPATAPKSKTT+K  PK KLPKVKTPPSSV AA
Sbjct: 1   MSSGFNNGLRVFRACRTLLAPSKSSATVPATAPKSKTTTK--PKTKLPKVKTPPSSVAAA 60

Query: 61  GVAATPEPKIKKEMSRPSGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNP 120
           GVAATPEPKIKK  SRPSGILKVTQVSPALSNFLGVSEASR+DAVTQIWSYIKLHNLQNP
Sbjct: 61  GVAATPEPKIKKGTSRPSGILKVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNP 120

Query: 121 DNKREIYCDDKLKAIFEGREKVGFLEIGKSLARHFVKN 158
           DNKREIYCDDKLKAIFEGREKV FLEIGK LARHFVKN
Sbjct: 121 DNKREIYCDDKLKAIFEGREKVSFLEIGKMLARHFVKN 156

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BLAST of CsaV3_3G009900 vs. ExPASy TrEMBL
Match: A0A6J1IWB1 (protein TRI1-like OS=Cucurbita maxima OX=3661 GN=LOC111479808 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.7e-56
Identity = 123/157 (78.34%), Postives = 132/157 (84.08%), Query Frame = 0


Query: 1   MSSGFNNGIRVFRACRALLAPSKSSATVPATAPKSKTTSKLEPKPKLPKVKTPPSSVAAG 60
           MSSGF+NGIRVFR CRALLAPSKSSATVP  A KS+TTSK   +   PK KTPP S  A 
Sbjct: 1   MSSGFSNGIRVFRGCRALLAPSKSSATVPPAAVKSRTTSKSNTE---PKEKTPPRSDVA- 60

Query: 61  VAATPEPKIKKEMSRPSGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNPD 120
            AA P+PK+K+EM+R +G LKV QVSPAL NFLGVSEASR+DAV QIWSYIKLHNLQNP 
Sbjct: 61  AAAAPKPKVKREMTRSTGFLKVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPA 120

Query: 121 NKREIYCDDKLKAIFEGREKVGFLEIGKSLARHFVKN 158
           NKREIYCDDKLKAIFEGREKVGFLEIGK L RHFVKN
Sbjct: 121 NKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 153

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BLAST of CsaV3_3G009900 vs. ExPASy TrEMBL
Match: A0A6J1EDA2 (upstream activation factor subunit spp27-like OS=Cucurbita moschata OX=3662 GN=LOC111432134 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 3.0e-55
Identity = 121/157 (77.07%), Postives = 131/157 (83.44%), Query Frame = 0


Query: 1   MSSGFNNGIRVFRACRALLAPSKSSATVPATAPKSKTTSKLEPKPKLPKVKTPPSSVAAG 60
           MSSGF+NGIRVFR C +LLAP KSSATVP TA KSKT SK   +   PK KTPP S  A 
Sbjct: 1   MSSGFSNGIRVFRGCTSLLAPLKSSATVPPTAVKSKTISKSNAE---PKEKTPPRSDVA- 60

Query: 61  VAATPEPKIKKEMSRPSGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNPD 120
            AA P+PK ++EM+RP+G+LKV QVSPAL NFLGVSEASR+DAV QIWSYIKLHNLQNP 
Sbjct: 61  AAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPS 120

Query: 121 NKREIYCDDKLKAIFEGREKVGFLEIGKSLARHFVKN 158
           NKREIYCDDKLKAIFEGREKVGFLEIGK L RHFVKN
Sbjct: 121 NKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 153

[Close]

BLAST of CsaV3_3G009900 vs. ExPASy TrEMBL
Match: A0A6J1D0R8 (upstream activation factor subunit spp27-like OS=Momordica charantia OX=3673 GN=LOC111015988 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 5.7e-54
Identity = 125/158 (79.11%), Postives = 133/158 (84.18%), Query Frame = 0


Query: 1   MSSGFNNGIRVFRACRALLAPSKSSATVP-ATAPKSKTTSKLEPKPKLPKVKTPPSSVAA 60
           MSSG +NGIRVFR CRALLAPSKSSA+VP A A KSK T K  PK +  K KT PSS  A
Sbjct: 1   MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGK--PKSE-SKEKTAPSSDTA 60

Query: 61  GVAATPEPKIKKEMSRPSGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNP 120
             AA P+PKIK+EM+RP+GILKV QVSPAL NFLGV EASR+DAV QIWSYIKLHNLQNP
Sbjct: 61  -AAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNP 120

Query: 121 DNKREIYCDDKLKAIFEGREKVGFLEIGKSLARHFVKN 158
            NKREIYCDDKLKAIFEGREKVGFLEIGK LARHFVKN
Sbjct: 121 ANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 154

[Close]

BLAST of CsaV3_3G009900 vs. TAIR 10
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-28
Identity = 74/155 (47.74%), Postives = 89/155 (57.42%), Query Frame = 0


Query: 11  VFRACRALLAP---------SKSSATVPATAPKSKTTSKLEPKPKLPKVKTPPSSVAAGV 70
           VFR  R+LLAP         S  S   PA  PK+K   K + K   P  KTP        
Sbjct: 8   VFRGARSLLAPASRATSSLVSAGSTKKPAAKPKAKAKPKPKAKSDSPAKKTP-------- 67

Query: 71  AATPEPKIKKEMSRPSGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNPDN 130
                        R +GI KVT VSP L+ FLG  E SR+DA+  IW+YIK H+LQNP +
Sbjct: 68  -------------RSTGIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPAD 127

Query: 131 KREIYCDDKLKAIFEGREKVGFLEIGKSLARHFVK 157
           KREI+CD+ LK IFEG++KVGFLEI K L+ HFVK
Sbjct: 128 KREIFCDETLKLIFEGKDKVGFLEISKLLSPHFVK 141

[Close]

BLAST of CsaV3_3G009900 vs. TAIR 10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 107.1 bits (266), Expect = 1.3e-23
Identity = 50/81 (61.73%), Postives = 64/81 (79.01%), Query Frame = 0


Query: 77  SGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNPDNKREIYCDDKLKAIFE 136
           +GILKV  VS  L+NF+G +E SR+ AV +IW YIKL+NLQNP NKREI CD++LK IF 
Sbjct: 28  TGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNKREILCDEQLKTIFS 87

Query: 137 GREKVGFLEIGKSLARHFVKN 158
           G++ VGFLEI K L++HF K+
Sbjct: 88  GKDTVGFLEISKLLSQHFPKS 108

[Close]

BLAST of CsaV3_3G009900 vs. TAIR 10
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 100.1 bits (248), Expect = 1.6e-21
Identity = 57/136 (41.91%), Postives = 79/136 (58.09%), Query Frame = 0


Query: 20  APSKSSATVPATAPKSKTTSKLEPKPKLPKVKTPPSSVAAGVAATPEPKIKKEMSRPSGI 79
           AP +SS   P         S L   P  P       +V +  AA+ +P    +   P GI
Sbjct: 18  APLRSSMLSP---------SSLRLSPNHPTNLRMVRAVTSAAAASSDPTTTTKTREPRGI 77

Query: 80  LKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNPDNKREIYCDDKLKAIFEGRE 139
           +K   VS A+ + +GV E  R+ A+ +IW+YIK H+LQ+P NKR+I CD+KLK IFEG+E
Sbjct: 78  MKPRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKE 137

Query: 140 KVGFLEIGKSLARHFV 156
           +VGFLEI K +  HF+
Sbjct: 138 RVGFLEIAKLIGPHFL 144

[Close]

BLAST of CsaV3_3G009900 vs. TAIR 10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 98.6 bits (244), Expect = 4.8e-21
Identity = 44/80 (55.00%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 78  GILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNPDNKREIYCDDKLKAIFEG 137
           GI K   VS  L++F G  E +R  A+ ++W Y+KLHNLQNP NK+EI+CDDKLK IF+G
Sbjct: 32  GIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKLKTIFDG 91

Query: 138 REKVGFLEIGKSLARHFVKN 158
           ++KVG  EI K L+ HF K+
Sbjct: 92  KDKVGITEIMKLLSPHFPKS 111

[Close]

BLAST of CsaV3_3G009900 vs. TAIR 10
Match: AT2G14880.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-18
Identity = 50/125 (40.00%), Postives = 73/125 (58.40%), Query Frame = 0


Query: 31  TAPKSKTTSKLEPKPKLPKVKTPPSSVAAGVAATPEPKIKKEMSRPSGILKVTQVSPALS 90
           + P S       P  KL  V+   S+  +        ++      P GI+K   VSP + 
Sbjct: 23  STPLSSLRFASHPAAKLRLVRAVTSATESSEPTATNKRV------PRGIMKPRPVSPEMQ 82

Query: 91  NFLGVSEASRSDAVTQIWSYIKLHNLQNPDNKREIYCDDKLKAIFEGREKVGFLEIGKSL 150
           + + + E +R+ A+ +IW+YIK H+LQ+P NKREI CD+KLK IFEGR++VGFLEI K +
Sbjct: 83  DIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDRVGFLEIAKLI 141

Query: 151 ARHFV 156
             HF+
Sbjct: 143 GPHFL 141

The following BLAST results are available for this feature:

BLAST of CsaV3_3G009900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004133931.1	1.8e-78	100.00	upstream activation factor subunit spp27 [Cucumis sativus] >KGN56620.1 hypotheti...	[more]
XP_008438197.1	2.0e-69	92.41	PREDICTED: upstream activation factor subunit UAF30-like [Cucumis melo] >XP_0084...	[more]
XP_038877222.1	1.2e-61	85.35	upstream activation factor subunit UAF30 [Benincasa hispida] >XP_038877226.1 ups...	[more]
XP_022980440.1	5.6e-56	78.34	protein TRI1-like [Cucurbita maxima]	[more]
XP_022924718.1	6.2e-55	77.07	upstream activation factor subunit spp27-like [Cucurbita moschata]	[more]

BLAST of CsaV3_3G009900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q05024	4.8e-10	42.05	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ...	[more]
O74503	5.3e-09	35.29	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
Q08747	7.0e-09	34.33	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]
Q9P7S3	3.8e-07	45.28	SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 ...	[more]
Q9FMT4	1.2e-05	32.86	SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g1...	[more]

BLAST of CsaV3_3G009900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3V0	8.7e-79	100.00	SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G126840 PE=4 S...	[more]
A0A1S3AVG6	9.6e-70	92.41	upstream activation factor subunit UAF30-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1IWB1	2.7e-56	78.34	protein TRI1-like OS=Cucurbita maxima OX=3661 GN=LOC111479808 PE=4 SV=1	[more]
A0A6J1EDA2	3.0e-55	77.07	upstream activation factor subunit spp27-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1D0R8	5.7e-54	79.11	upstream activation factor subunit spp27-like OS=Momordica charantia OX=3673 GN=...	[more]

BLAST of CsaV3_3G009900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03590.1	1.4e-28	47.74	SWIB/MDM2 domain superfamily protein	[more]
AT2G35605.1	1.3e-23	61.73	SWIB/MDM2 domain superfamily protein	[more]
AT4G34290.1	1.6e-21	41.91	SWIB/MDM2 domain superfamily protein	[more]
AT1G31760.1	4.8e-21	55.00	SWIB/MDM2 domain superfamily protein	[more]
AT2G14880.1	1.0e-18	40.00	SWIB/MDM2 domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 79..156 e-value: 1.1E-24 score: 98.0
IPR036885	SWIB/MDM2 domain superfamily	GENE3D	1.10.245.10	SWIB/MDM2 domain	coord: 73..157 e-value: 3.4E-27 score: 96.3
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	47592	SWIB/MDM2 domain	coord: 75..156
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 84..154 e-value: 5.0E-28 score: 96.8
IPR003121	SWIB/MDM2 domain	PROSITE	PS51925	SWIB_MDM2	coord: 78..156 score: 22.545551
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..75
None	No IPR available	PANTHER	PTHR13844	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D	coord: 1..156
None	No IPR available	PANTHER	PTHR13844:SF67	PROTEIN TRI1	coord: 1..156
None	No IPR available	CDD	cd10567	SWIB-MDM2_like	coord: 84..154 e-value: 5.25639E-32 score: 107.244

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G009900.1	CsaV3_3G009900.1	mRNA