CsaV3_3G007400 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G007400
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Protein transport protein Sec61 subunit beta
Location	chr3: 6590539 .. 6592128 (+)
RNA-Seq Expression	CsaV3_3G007400
Synteny	CsaV3_3G007400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GACTTTGGAGGCTCCCCATTCCAACCAAACAACTCTCTTCCTCCTCAGGCAAGTATCCCTCTTCTGCTTCCATGAATCCATGATGAGCAAACCTGATCTATATTTTTTTTTCTTACGATTTGGTAAATTAGGGTTTCCTAACCATTCTAGTTTTTCTACGATTTCGGTTGCCTCTGGACTTTGGATCCTCGTCAGATCTGGATTTATTTTATTATATTTTTTCCTAATTGATGTTCGAGTTAATTATATTTTTTGCGAATTTTGAGAATGTTCGTTTCTTTGCAGAGATTTATAGAACCAAATTTTCTCTTGTTTTCCATCTCGATTTTGTTTTGTGAAACAGATCTCCCCCTTTCCTCCTCCTTTTTCTTCAGTTTGGCGCTAATCTGTGGTGGCTGTTATAAAAAATTAGGGCTCGAAATTGTTTCTTCCCATGTCCATATGTTTGGCTTCTGTTGTTAACTTATAGGTTAATTATATGTTTTAATTTACAAACTCTAACTTTGAGGGAGGGTTTGAGGCCTTGCGCATTGCCTGGTTCGAGGCCTTGGGGAAGTCAAGGATCTAATAGGTTTTTTTCTTCAATAACAAAATCGTTAAATTAGCTTCTGATTCCATTCATAGTTTGGTACCTTGCCTTCTAATTATTCTTCTAAATTATTGATCTGAATCAGTTCCGAATCTGTCAGTATTAAATCTCAACTCATGCATTATGGCCTACTAATTGGTTTAATTACACAGTACCTAGTTTTAGGGGTTCAAAGTTCATTGTTTCGTATGTTAAATAATCCATATTCATGTTAGTAAACATTTGCACGGACTTTCGGAGTTCTAGCTAGACTAATTATATCCTTCGAGAACAATTGTTTGATGGAGATGGAGGTTGTCTTGTTAGATAATGAAATTTTGATAACCTGATTTGAGAAAGGTCAGGGAAGGTTGGAGATTAACATTCCTTCCTGCATGTTCATATTTGATTCAGAAGTGTTCAACAAGGGATGTCTCCCGTTTACGATGACTCAATTGTCAGCTTGAAAGTTTCTAACTTCTCGTTCTATTTGTCAATACAGAATGGCTTTAGGTGGAGGAGGTCCCCAGAGAGGAAGTGCGGCAGCTACTGCCAGCATGCGCAGGAGAAGAACAACAAGTTCTGGTACATCTGGAGGGGCAGCTGGAACGATGCTGCAGTTTTACACGGATGATGCTCCTGGACTCAAGATATCCCCGAATGTTGTTCTCGTCATGAGCATTGGTTTCATTGCTTTTGTTGCTGTTCTCCATGTTATGGGTAAGCTGTACTTCGTGCGAAGAGAAGCCTAGAGGGTTTGCCCCTGATAAAAGTGTGATGCATATTTAAATTCATGGTGGAAAAATTTTAATTTTGAACTGAACTTTCGTTTGTCATGACAGTTAAAACTAATTTGGATTTTGTTACTAGTTAGAATGAAAGAGTTGTTCTGTCCTTGTCTAAATTTTGCCTTTTGCGTTACTCGAGTGTTGGTTATTCTTATGCACATTAAAGCCTACTACAATTTACAACATGACAACCACCAGAGTGTAGAATCAGATTTGTTGTGGGAACGACGTTGA

mRNA sequence

ATGGCTTTAGGTGGAGGAGGTCCCCAGAGAGGAAGTGCGGCAGCTACTGCCAGCATGCGCAGGAGAAGAACAACAAGTTCTGGTACATCTGGAGGGGCAGCTGGAACGATGCTGCAGTTTTACACGGATGATGCTCCTGGACTCAAGATATCCCCGAATGTTGTTCTCGTCATGAGCATTGGTTTCATTGCTTTTGTTGCTGTTCTCCATGTTATGGTTAGAATGAAAGAGTTGTTCTGTCCTTGTCTAAATTTTGCCTTTTGCGTTACTCGAGTGTTGGTTATTCTTATGCACATTAAAGCCTACTACAATTTACAACATGACAACCACCAGAGTGTAGAATCAGATTTGTTGTGGGAACGACGTTGA

Coding sequence (CDS)

ATGGCTTTAGGTGGAGGAGGTCCCCAGAGAGGAAGTGCGGCAGCTACTGCCAGCATGCGCAGGAGAAGAACAACAAGTTCTGGTACATCTGGAGGGGCAGCTGGAACGATGCTGCAGTTTTACACGGATGATGCTCCTGGACTCAAGATATCCCCGAATGTTGTTCTCGTCATGAGCATTGGTTTCATTGCTTTTGTTGCTGTTCTCCATGTTATGGTTAGAATGAAAGAGTTGTTCTGTCCTTGTCTAAATTTTGCCTTTTGCGTTACTCGAGTGTTGGTTATTCTTATGCACATTAAAGCCTACTACAATTTACAACATGACAACCACCAGAGTGTAGAATCAGATTTGTTGTGGGAACGACGTTGA

Protein sequence

MALGGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAVLHVMVRMKELFCPCLNFAFCVTRVLVILMHIKAYYNLQHDNHQSVESDLLWERR*

Homology

[Close]

BLAST of CsaV3_3G007400 vs. NCBI nr
Match: KAE8650213.1 (hypothetical protein Csa_009973 [Cucumis sativus])

HSP 1 Score: 236.1 bits (601), Expect = 1.6e-58
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MALGGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
           MALGGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1   MALGGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 61  GFIAFVAVLHVMVRMKELFCPCLNFAFCVTRVLVILMHIKAYYNLQHDNHQSVESDLLWE 120
           GFIAFVAVLHVMVRMKELFCPCLNFAFCVTRVLVILMHIKAYYNLQHDNHQSVESDLLWE
Sbjct: 61  GFIAFVAVLHVMVRMKELFCPCLNFAFCVTRVLVILMHIKAYYNLQHDNHQSVESDLLWE 120

Query: 121 RR 123
           RR
Sbjct: 121 RR 122

[Close]

BLAST of CsaV3_3G007400 vs. NCBI nr
Match: XP_011650635.1 (protein transport protein Sec61 subunit beta [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 3.3e-27
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1  MALGGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
          MALGGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1  MALGGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 61 GFIAFVAVLHVMVRM 76
          GFIAFVAVLHVM ++
Sbjct: 61 GFIAFVAVLHVMGKL 75

[Close]

BLAST of CsaV3_3G007400 vs. NCBI nr
Match: XP_022950482.1 (protein transport protein Sec61 subunit beta-like [Cucurbita moschata] >XP_022974254.1 protein transport protein Sec61 subunit beta-like [Cucurbita maxima] >XP_022975750.1 protein transport protein Sec61 subunit beta-like [Cucurbita maxima] >XP_023541021.1 protein transport protein Sec61 subunit beta-like [Cucurbita pepo subsp. pepo] >KAG6597025.1 Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028503.1 Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.4 bits (324), Expect = 2.1e-26
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 0


Query: 1  MALGGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
          MALGGG PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 61 GFIAFVAVLHVMVRM 76
          GFIAFVA+LHVM ++
Sbjct: 61 GFIAFVAILHVMGKL 75

[Close]

BLAST of CsaV3_3G007400 vs. NCBI nr
Match: XP_038875187.1 (protein transport protein Sec61 subunit beta-like isoform X1 [Benincasa hispida])

HSP 1 Score: 127.1 bits (318), Expect = 1.0e-25
Identity = 69/75 (92.00%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 1  MALGGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
          MALGG  PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 19 MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 78

Query: 61 GFIAFVAVLHVMVRM 76
          GFIAFVA+LHVM ++
Sbjct: 79 GFIAFVAILHVMGKL 93

[Close]

BLAST of CsaV3_3G007400 vs. NCBI nr
Match: XP_022146520.1 (protein transport protein Sec61 subunit beta-like [Momordica charantia] >XP_022924769.1 protein transport protein Sec61 subunit beta-like [Cucurbita moschata] >XP_022924770.1 protein transport protein Sec61 subunit beta-like [Cucurbita moschata] >XP_022980768.1 protein transport protein Sec61 subunit beta-like [Cucurbita maxima] >XP_023526368.1 protein transport protein Sec61 subunit beta-like [Cucurbita pepo subsp. pepo] >XP_038875266.1 protein transport protein Sec61 subunit beta-like isoform X2 [Benincasa hispida] >KAG6582719.1 Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020688.1 Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.1 bits (318), Expect = 1.0e-25
Identity = 69/75 (92.00%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 1  MALGGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
          MALGG  PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1  MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 61 GFIAFVAVLHVMVRM 76
          GFIAFVA+LHVM ++
Sbjct: 61 GFIAFVAILHVMGKL 75

[Close]

BLAST of CsaV3_3G007400 vs. ExPASy Swiss-Prot
Match: P38389 (Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana OX=3702 GN=At2g45070 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 6.6e-23
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 3  LGGGGPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVM 62
          +G G PQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+M
Sbjct: 2  VGSGAPQRGSAAATASMRRRKPTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 61

Query: 63 SIGFIAFVAVLHVMVRM 76
          SIGFIAFVAVLHVM ++
Sbjct: 62 SIGFIAFVAVLHVMGKL 78

[Close]

BLAST of CsaV3_3G007400 vs. ExPASy Swiss-Prot
Match: A8I6P9 (Protein transport protein Sec61 subunit beta OS=Chlamydomonas reinhardtii OX=3055 GN=SEC61B PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.1e-06
Identity = 34/74 (45.95%), Postives = 43/74 (58.11%), Query Frame = 0


Query: 1  MALGGGGPQRGSAAATASMRRRRTTSSGTSG--GAAGTMLQFYTDDAPGLKISPNVVLVM 60
          +A GG         A  ++RRR    SG SG   A    + FYTDD PG K+SP VV+ M
Sbjct: 12 VARGGRSSSNAPTGAAGALRRRPVRGSGGSGTTKAQQAAMNFYTDDTPGWKMSPVVVITM 71

Query: 61 SIGFIAFVAVLHVM 73
          S+ FIAFV +LHV+
Sbjct: 72 SLSFIAFVTILHVV 85

[Close]

BLAST of CsaV3_3G007400 vs. ExPASy Swiss-Prot
Match: Q9HFC7 (Protein transport protein Sec61 subunit beta OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=SBH1 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 4.3e-06
Identity = 29/61 (47.54%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 15 ATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAVLHVMVR 74
          A AS R   T S G +GG++ TML+ YTD++ GLK+ P VV+V+S+GFI  V  LH++ +
Sbjct: 26 AKASQRPTSTRSVG-AGGSSSTMLKLYTDESQGLKVDPVVVMVLSLGFIFSVVALHILAK 85

Query: 75 M 76
          +
Sbjct: 86 V 85

[Close]

BLAST of CsaV3_3G007400 vs. ExPASy Swiss-Prot
Match: O43002 (Protein transport protein sec61 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sbh1 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.6e-05
Identity = 30/81 (37.04%), Postives = 49/81 (60.49%), Query Frame = 0


Query: 6  GGPQRGSAAATASMRRRRTTSSGTSG-------GAAGTMLQFYTDDAPGLKISPNVVLVM 65
          GGP+       A  +  + ++SG +G       G+  T+L+ YTD+A G K+ P VV+V+
Sbjct: 19 GGPKSQIRRRAAVEKNTKESNSGPAGARAAGAPGSTPTLLKLYTDEASGFKVDPVVVMVL 78

Query: 66 SIGFIAFVAVLHVMVRMKELF 80
          S+GFIA V +LH++ R+ + F
Sbjct: 79 SVGFIASVFLLHIVARILKKF 99

[Close]

BLAST of CsaV3_3G007400 vs. ExPASy Swiss-Prot
Match: P60467 (Protein transport protein Sec61 subunit beta OS=Canis lupus familiaris OX=9615 GN=SEC61B PE=1 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 2.4e-04
Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 5  GGGPQRGSA--AATASMRRRRTTSSG------TSGGAAGTMLQFYTDDAPGLKISPNVVL 64
          G  P +  A  AA +++R+R+  S G      T+    G M +FYT+D+PGLK+ P  VL
Sbjct: 15 GRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVL 74

Query: 65 VMSIGFIAFVAVLHV 72
          VMS+ FIA V +LH+
Sbjct: 75 VMSLLFIASVFMLHI 89

[Close]

BLAST of CsaV3_3G007400 vs. ExPASy TrEMBL
Match: A0A0A0L6Y8 (Protein transport protein Sec61 subunit beta OS=Cucumis sativus OX=3659 GN=Csa_3G117430 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.6e-27
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1  MALGGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
          MALGGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1  MALGGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 61 GFIAFVAVLHVMVRM 76
          GFIAFVAVLHVM ++
Sbjct: 61 GFIAFVAVLHVMGKL 75

[Close]

BLAST of CsaV3_3G007400 vs. ExPASy TrEMBL
Match: A0A6J1IH25 (Protein transport protein Sec61 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111472887 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.0e-26
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 0


Query: 1  MALGGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
          MALGGG PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 61 GFIAFVAVLHVMVRM 76
          GFIAFVA+LHVM ++
Sbjct: 61 GFIAFVAILHVMGKL 75

[Close]

BLAST of CsaV3_3G007400 vs. ExPASy TrEMBL
Match: A0A6J1GEY3 (Protein transport protein Sec61 subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111453574 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.0e-26
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 0


Query: 1  MALGGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
          MALGGG PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 61 GFIAFVAVLHVMVRM 76
          GFIAFVA+LHVM ++
Sbjct: 61 GFIAFVAILHVMGKL 75

[Close]

BLAST of CsaV3_3G007400 vs. ExPASy TrEMBL
Match: A0A6J1EFZ9 (Protein transport protein Sec61 subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111432170 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.1e-26
Identity = 69/75 (92.00%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 1  MALGGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
          MALGG  PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1  MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 61 GFIAFVAVLHVMVRM 76
          GFIAFVA+LHVM ++
Sbjct: 61 GFIAFVAILHVMGKL 75

[Close]

BLAST of CsaV3_3G007400 vs. ExPASy TrEMBL
Match: A0A6J1J088 (Protein transport protein Sec61 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111480059 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.1e-26
Identity = 69/75 (92.00%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 1  MALGGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
          MALGG  PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1  MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 61 GFIAFVAVLHVMVRM 76
          GFIAFVA+LHVM ++
Sbjct: 61 GFIAFVAILHVMGKL 75

[Close]

BLAST of CsaV3_3G007400 vs. TAIR 10
Match: AT2G45070.1 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 108.2 bits (269), Expect = 4.7e-24
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 3  LGGGGPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVM 62
          +G G PQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+M
Sbjct: 2  VGSGAPQRGSAAATASMRRRKPTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 61

Query: 63 SIGFIAFVAVLHVMVRM 76
          SIGFIAFVAVLHVM ++
Sbjct: 62 SIGFIAFVAVLHVMGKL 78

[Close]

BLAST of CsaV3_3G007400 vs. TAIR 10
Match: AT2G45070.2 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 108.2 bits (269), Expect = 4.7e-24
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 3  LGGGGPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVM 62
          +G G PQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+M
Sbjct: 2  VGSGAPQRGSAAATASMRRRKPTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 61

Query: 63 SIGFIAFVAVLHVMVRM 76
          SIGFIAFVAVLHVM ++
Sbjct: 62 SIGFIAFVAVLHVMGKL 78

[Close]

BLAST of CsaV3_3G007400 vs. TAIR 10
Match: AT2G45070.3 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 108.2 bits (269), Expect = 4.7e-24
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 3  LGGGGPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVM 62
          +G G PQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+M
Sbjct: 2  VGSGAPQRGSAAATASMRRRKPTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 61

Query: 63 SIGFIAFVAVLHVMVRM 76
          SIGFIAFVAVLHVM ++
Sbjct: 62 SIGFIAFVAVLHVMGKL 78

[Close]

BLAST of CsaV3_3G007400 vs. TAIR 10
Match: AT2G45070.4 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 108.2 bits (269), Expect = 4.7e-24
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 3  LGGGGPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVM 62
          +G G PQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+M
Sbjct: 2  VGSGAPQRGSAAATASMRRRKPTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 61

Query: 63 SIGFIAFVAVLHVMVRM 76
          SIGFIAFVAVLHVM ++
Sbjct: 62 SIGFIAFVAVLHVMGKL 78

[Close]

BLAST of CsaV3_3G007400 vs. TAIR 10
Match: AT3G60540.1 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 106.7 bits (265), Expect = 1.4e-23
Identity = 59/74 (79.73%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 3  LGGGGPQRGSAAATASMRRRRTT-SSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIG 62
          +GGG PQRGSAAATASMRRR+    S ++GG AGTMLQFYTDDAPGLKISPNVVL+MSIG
Sbjct: 2  VGGGAPQRGSAAATASMRRRKPAGGSSSAGGGAGTMLQFYTDDAPGLKISPNVVLIMSIG 61

Query: 63 FIAFVAVLHVMVRM 76
          FIAFVAVLHVM ++
Sbjct: 62 FIAFVAVLHVMGKL 75

The following BLAST results are available for this feature:

BLAST of CsaV3_3G007400 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650213.1	1.6e-58	100.00	hypothetical protein Csa_009973 [Cucumis sativus]	[more]
XP_011650635.1	3.3e-27	96.00	protein transport protein Sec61 subunit beta [Cucumis sativus]	[more]
XP_022950482.1	2.1e-26	93.33	protein transport protein Sec61 subunit beta-like [Cucurbita moschata] >XP_02297...	[more]
XP_038875187.1	1.0e-25	92.00	protein transport protein Sec61 subunit beta-like isoform X1 [Benincasa hispida]	[more]
XP_022146520.1	1.0e-25	92.00	protein transport protein Sec61 subunit beta-like [Momordica charantia] >XP_0229...	[more]

BLAST of CsaV3_3G007400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P38389	6.6e-23	79.22	Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana OX=3702 GN=...	[more]
A8I6P9	1.1e-06	45.95	Protein transport protein Sec61 subunit beta OS=Chlamydomonas reinhardtii OX=305...	[more]
Q9HFC7	4.3e-06	47.54	Protein transport protein Sec61 subunit beta OS=Yarrowia lipolytica (strain CLIB...	[more]
O43002	3.6e-05	37.04	Protein transport protein sec61 subunit beta OS=Schizosaccharomyces pombe (strai...	[more]
P60467	2.4e-04	42.67	Protein transport protein Sec61 subunit beta OS=Canis lupus familiaris OX=9615 G...	[more]

BLAST of CsaV3_3G007400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6Y8	1.6e-27	96.00	Protein transport protein Sec61 subunit beta OS=Cucumis sativus OX=3659 GN=Csa_3...	[more]
A0A6J1IH25	1.0e-26	93.33	Protein transport protein Sec61 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1GEY3	1.0e-26	93.33	Protein transport protein Sec61 subunit beta OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1EFZ9	5.1e-26	92.00	Protein transport protein Sec61 subunit beta OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1J088	5.1e-26	92.00	Protein transport protein Sec61 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of CsaV3_3G007400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45070.1	4.7e-24	79.22	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT2G45070.2	4.7e-24	79.22	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT2G45070.3	4.7e-24	79.22	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT2G45070.4	4.7e-24	79.22	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT3G60540.1	1.4e-23	79.73	Preprotein translocase Sec, Sec61-beta subunit protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016482	Protein transport protein SecG/Sec61-beta/Sbh	PFAM	PF03911	Sec61_beta	coord: 34..72 e-value: 7.5E-18 score: 64.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	PANTHER	PTHR13509:SF2	PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT BETA	coord: 1..76
IPR030671	Protein transport Sec61-beta/Sbh	PANTHER	PTHR13509	SEC61 SUBUNIT BETA	coord: 1..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G007400.1	CsaV3_3G007400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0005784	Sec61 translocon complex