CsaV3_3G007060 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G007060
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionATP-dependent zinc metalloprotease FTSH 3, mitochondrial
Locationchr3: 6369201 .. 6370510 (+)
RNA-Seq ExpressionCsaV3_3G007060
SyntenyCsaV3_3G007060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCGTGGAAAGCCTTGCAAGAGGACGAGTGTGGACTCCTTGATCGATAATAAGTCAATTTACCATGCTCAGTATCGAAGGCGTATTCCTTCCCCTACTTCCTTAGCAGCCAATGCTCCAATTCAGAAGGGTCTTATTCCCTGTCTCTATATCGCCATTGACTTCTCTAGGCTCTTTTTTTTTTTTCTTCCACGTCTCCACTATTACATTTGCAAATGTTCCATCTGTTTGATTTGTTGTATTCTGTGCCTTGGGCTCTAACCTGATGACTGGTTTTTTAAAGTTATCTTAAGTAGTTAAAGTTTGATCAAGAGCCATCTTACTTTTCGCAGAGACTTGCTGCTTTGACTCCTGGATTTGCTGGAGAGACATTGTGAATGTTTGCAGTGAAGCTACTGCTTTAATTGCTGCTAGAAACGAAAGTAGATTGGTCACTATGGGACACTTTGAGGCAGTTATCGACAAAGTCATAGGTGGCCTGGAAAAATATAAGATATTTTGTTGATCACCCACTACTTAAGTGGAGAGCTCTACATTTTCTTCTTTTTTCCTTTTCTGAAAAGAAATACAAAAAACTTTTTCTTCTTAATTAAACACTAACACAATCAAAGCATCGCTCTCTTATTTCTTTCTCTCCTGCTTTCTTTGATATAATCTTTTCCTTTTATGTATTCATCCATTTTGCCTCCATTATTGACTTAAATTAAATCTTAGGAAAGACAACATAAAACTTGAGAATTCCCTTGAGAAGTTCATATAAGTCTATCCTAGAAAATTTTCGAACTGGGAATCATGACACATTTGATTTGTTCTGCATTTCCAATCAATTGTTTAATTATGTGATTCTAGTTCATCGGCTTGTCATAGATGATTGTTTCAGTTAGTCTGGGCGGCTTGCTAAATAAGCCATATTTGCTTTCAGTGAATGGAGATTAGTTTTAGTTTATCTCATTCATGTTGTTATTGTAATTAGGTATCATTTGATATTGGGTTTTAGAACTCTTTAAAGGTGTCTTTCTCTACTAAGTTTAGTGATGAATTAAAGTTACAGATTGAACTTTTCTTATAAAAAAAATGTTACAGATTGAATTTGATCATGTGTTATCTTTGTATCCAGGTACATATGCCATAATTTGATCTCCATAATTTTTTTCTCTTCCAGCAAATCATTGCCCCTTCCATTTAAATGGTTTACTGCAGAGCAATGTTGGCAGTATGAGAGAATGATTAGAGGTTGGCGGTGTGAGCATTACCAATGGGATATGGATATCAGTATCATTGGAGTAGTTGAGGTTATGATATGTTAA

mRNA sequence

ATGGGTCGTGGAAAGCCTTGCAAGAGGACGAGTGTGGACTCCTTGATCGATAATAAGTCAATTTACCATGCTCAGTATCGAAGGCGTATTCCTTCCCCTACTTCCTTAGCAGCCAATGCTCCAATTCAGAAGGAGACTTGCTGCTTTGACTCCTGGATTTGCTGGAGAGACATTGTGAATGTTTGCAGTGAAGCTACTGCTTTAATTGCTGCTAGAAACGAAAGTAGATTGGTCACTATGGGACACTTTGAGGCAGTTATCGACAAAGTCATAGAGCAATGTTGGCAGTATGAGAGAATGATTAGAGGTTGGCGGTGTGAGCATTACCAATGGGATATGGATATCAGTATCATTGGAGTAGTTGAGGTTATGATATGTTAA

Coding sequence (CDS)

ATGGGTCGTGGAAAGCCTTGCAAGAGGACGAGTGTGGACTCCTTGATCGATAATAAGTCAATTTACCATGCTCAGTATCGAAGGCGTATTCCTTCCCCTACTTCCTTAGCAGCCAATGCTCCAATTCAGAAGGAGACTTGCTGCTTTGACTCCTGGATTTGCTGGAGAGACATTGTGAATGTTTGCAGTGAAGCTACTGCTTTAATTGCTGCTAGAAACGAAAGTAGATTGGTCACTATGGGACACTTTGAGGCAGTTATCGACAAAGTCATAGAGCAATGTTGGCAGTATGAGAGAATGATTAGAGGTTGGCGGTGTGAGCATTACCAATGGGATATGGATATCAGTATCATTGGAGTAGTTGAGGTTATGATATGTTAA

Protein sequence

MGRGKPCKRTSVDSLIDNKSIYHAQYRRRIPSPTSLAANAPIQKETCCFDSWICWRDIVNVCSEATALIAARNESRLVTMGHFEAVIDKVIEQCWQYERMIRGWRCEHYQWDMDISIIGVVEVMIC*
Homology
BLAST of CsaV3_3G007060 vs. NCBI nr
Match: KAE8650205.1 (hypothetical protein Csa_010979 [Cucumis sativus])

HSP 1 Score: 272.7 bits (696), Expect = 1.6e-69
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0

Query: 1   MGRGKPCKRTSVDSLIDNKSIYHAQYRRRIPSPTSLAANAPIQKETCCFDSWICWRDIVN 60
           MGRGKPCKRTSVDSLIDNKSIYHAQYRRRIPSPTSLAANAPIQKETCCFDSWICWRDIVN
Sbjct: 1   MGRGKPCKRTSVDSLIDNKSIYHAQYRRRIPSPTSLAANAPIQKETCCFDSWICWRDIVN 60

Query: 61  VCSEATALIAARNESRLVTMGHFEAVIDKVIEQCWQYERMIRGWRCEHYQWDMDISIIGV 120
           VCSEATALIAARNESRLVTMGHFEAVIDKVIEQCWQYERMIRGWRCEHYQWDMDISIIGV
Sbjct: 61  VCSEATALIAARNESRLVTMGHFEAVIDKVIEQCWQYERMIRGWRCEHYQWDMDISIIGV 120

Query: 121 VEVMIC 127
           VEVMIC
Sbjct: 121 VEVMIC 126

BLAST of CsaV3_3G007060 vs. NCBI nr
Match: XP_031738931.1 (protein BONZAI 2 isoform X3 [Cucumis sativus] >XP_031738932.1 protein BONZAI 2 isoform X3 [Cucumis sativus] >XP_031738933.1 protein BONZAI 2 isoform X3 [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 8.1e-05
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 0

Query: 100 MIRGWRCEHYQWDMDISIIGVVEVMI 126
           MIRGWRCEHYQWDMDISIIGVVE+ +
Sbjct: 1   MIRGWRCEHYQWDMDISIIGVVELSV 26

BLAST of CsaV3_3G007060 vs. NCBI nr
Match: XP_031738934.1 (protein BONZAI 2 isoform X4 [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 8.1e-05
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 0

Query: 100 MIRGWRCEHYQWDMDISIIGVVEVMI 126
           MIRGWRCEHYQWDMDISIIGVVE+ +
Sbjct: 1   MIRGWRCEHYQWDMDISIIGVVELSV 26

BLAST of CsaV3_3G007060 vs. NCBI nr
Match: RVX05079.1 (Histidine--tRNA ligase, chloroplastic/mitochondrial [Vitis vinifera])

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-04
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 0

Query: 91  IEQCWQYERMIRGWRCEHYQWDMDISIIGVVEVMIC 127
           + QCW+YERM RG R EHYQW+MD  IIGV EVM+C
Sbjct: 44  VGQCWRYERMTRGRRREHYQWNMD--IIGVPEVMVC 77

BLAST of CsaV3_3G007060 vs. NCBI nr
Match: XP_034913837.1 (histidine--tRNA ligase, chloroplastic/mitochondrial [Populus alba])

HSP 1 Score: 56.2 bits (134), Expect = 2.3e-04
Identity = 25/33 (75.76%), Postives = 27/33 (81.82%), Query Frame = 0

Query: 91  IEQCWQYERMIRGWRCEHYQWDMDISIIGVVEV 124
           I QCW+YERM RGWR EHYQW+MD  IIGV EV
Sbjct: 189 IGQCWRYERMTRGWRREHYQWNMD--IIGVPEV 219

BLAST of CsaV3_3G007060 vs. ExPASy Swiss-Prot
Match: O82413 (Histidine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g46100 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.9e-05
Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 0

Query: 91  IEQCWQYERMIRGWRCEHYQWDMDISIIGVVEV 124
           I QCW+YERM RG R EHYQW+MD  IIGV +V
Sbjct: 169 IGQCWRYERMTRGRRREHYQWNMD--IIGVPQV 199

BLAST of CsaV3_3G007060 vs. ExPASy Swiss-Prot
Match: Q84WU8 (ATP-dependent zinc metalloprotease FTSH 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=FTSH3 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.9e-05
Identity = 31/79 (39.24%), Postives = 42/79 (53.16%), Query Frame = 0

Query: 57  DIVNVCSEATALIAARNESRLVTMGHFEAVIDKVIEQCWQYERMIR-------------- 116
           DI NVC+EA ALIAAR+E   VTM HFE+ ID+VI    +  R+I               
Sbjct: 532 DIANVCNEA-ALIAARHEGATVTMAHFESAIDRVIGGLEKKNRVISKLERRTVAYHESGH 591

Query: 117 ---GWRCEHYQWDMDISII 119
              GW  EH +  + ++I+
Sbjct: 592 AVVGWFLEHAEPLLKVTIV 609

BLAST of CsaV3_3G007060 vs. ExPASy Swiss-Prot
Match: Q8S2A7 (ATP-dependent zinc metalloprotease FTSH 3, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=FTSH3 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 6.4e-05
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 0

Query: 57  DIVNVCSEATALIAARNESRLVTMGHFEAVIDKVI 92
           DI NVC+EA ALIAAR+E  L+TM HFE+ ID+VI
Sbjct: 531 DIANVCNEA-ALIAARSEGTLITMQHFESAIDRVI 564

BLAST of CsaV3_3G007060 vs. ExPASy Swiss-Prot
Match: Q8VZI8 (ATP-dependent zinc metalloprotease FTSH 10, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=FTSH10 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.1e-04
Identity = 30/79 (37.97%), Postives = 42/79 (53.16%), Query Frame = 0

Query: 57  DIVNVCSEATALIAARNESRLVTMGHFEAVIDKVIEQCWQYERMI--------------- 116
           DI NVC+EA ALIAAR+E   VTM HF++ ID+VI    +  R+I               
Sbjct: 538 DIANVCNEA-ALIAARHEGATVTMAHFDSAIDRVIGGLEKKNRVISKLERRTVAYHESGH 597

Query: 117 --RGWRCEHYQWDMDISII 119
              GW  EH +  + ++I+
Sbjct: 598 AVAGWFLEHAEPLLKVTIV 615

BLAST of CsaV3_3G007060 vs. ExPASy Swiss-Prot
Match: Q0DHL4 (ATP-dependent zinc metalloprotease FTSH 8, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=FTSH8 PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.2e-04
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 0

Query: 57  DIVNVCSEATALIAARNESRLVTMGHFEAVIDKVI 92
           DI NVC+EA ALIAAR+E   +TM HFE+ ID++I
Sbjct: 546 DIANVCNEA-ALIAARSEETQITMQHFESAIDRII 579

BLAST of CsaV3_3G007060 vs. ExPASy TrEMBL
Match: A0A438J7Y9 (Histidine--tRNA ligase OS=Vitis vinifera OX=29760 GN=VvCHDp000673_5 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 8.7e-05
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 0

Query: 91  IEQCWQYERMIRGWRCEHYQWDMDISIIGVVEVMIC 127
           + QCW+YERM RG R EHYQW+MD  IIGV EVM+C
Sbjct: 44  VGQCWRYERMTRGRRREHYQWNMD--IIGVPEVMVC 77

BLAST of CsaV3_3G007060 vs. ExPASy TrEMBL
Match: A0A4S4E024 (Histidine--tRNA ligase OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_014883 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.3e-04
Identity = 29/66 (43.94%), Postives = 37/66 (56.06%), Query Frame = 0

Query: 70  AARNESRLVTMGHFEAVIDK---------VIEQCWQYERMIRGWRCEHYQWDMDISIIGV 127
           A R      T+   E +++K          + QCW+YERM RG R EHYQW+MD  IIGV
Sbjct: 104 AGRRSETSFTVLRTEEILEKSASLPLKWFAVGQCWRYERMTRGRRREHYQWNMD--IIGV 163

BLAST of CsaV3_3G007060 vs. ExPASy TrEMBL
Match: A0A0V0IUW0 (Putative ovule protein OS=Solanum chacoense OX=4108 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 7.4e-04
Identity = 31/79 (39.24%), Postives = 43/79 (54.43%), Query Frame = 0

Query: 57  DIVNVCSEATALIAARNESRLVTMGHFEAVIDKVI-----------------EQCWQYER 116
           DI NVC+EA ALIAARNES ++TM HFE+ ID+VI                   C +   
Sbjct: 541 DIANVCNEA-ALIAARNESTIITMQHFESAIDRVIGGLEKKNKVISKLERRTVACHESGH 600

Query: 117 MIRGWRCEHYQWDMDISII 119
            + GW  EH +  + ++I+
Sbjct: 601 AVAGWFLEHAEPLLKVTIV 618

BLAST of CsaV3_3G007060 vs. ExPASy TrEMBL
Match: A0A0V0IT45 (Putative ovule protein OS=Solanum chacoense OX=4108 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 7.4e-04
Identity = 31/79 (39.24%), Postives = 43/79 (54.43%), Query Frame = 0

Query: 57  DIVNVCSEATALIAARNESRLVTMGHFEAVIDKVI-----------------EQCWQYER 116
           DI NVC+EA ALIAARNES ++TM HFE+ ID+VI                   C +   
Sbjct: 199 DIANVCNEA-ALIAARNESTIITMQHFESAIDRVIGGLEKKNKVISKLERRTVACHESGH 258

Query: 117 MIRGWRCEHYQWDMDISII 119
            + GW  EH +  + ++I+
Sbjct: 259 AVAGWFLEHAEPLLKVTIV 276

BLAST of CsaV3_3G007060 vs. ExPASy TrEMBL
Match: A0A0V0IUL9 (Putative ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like OS=Solanum chacoense OX=4108 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 7.4e-04
Identity = 31/79 (39.24%), Postives = 43/79 (54.43%), Query Frame = 0

Query: 57  DIVNVCSEATALIAARNESRLVTMGHFEAVIDKVI-----------------EQCWQYER 116
           DI NVC+EA ALIAARNES ++TM HFE+ ID+VI                   C +   
Sbjct: 539 DIANVCNEA-ALIAARNESTIITMQHFESAIDRVIGGLEKKNKVISKLERRTVACHESGH 598

Query: 117 MIRGWRCEHYQWDMDISII 119
            + GW  EH +  + ++I+
Sbjct: 599 AVAGWFLEHAEPLLKVTIV 616

BLAST of CsaV3_3G007060 vs. TAIR 10
Match: AT5G03406.1 (Class II aaRS and biotin synthetases superfamily protein )

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-06
Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 0

Query: 91  IEQCWQYERMIRGWRCEHYQWDMDISIIGVVEV 124
           + QCW+YERM RG R EHYQW+MD  IIGV EV
Sbjct: 169 VGQCWRYERMTRGRRREHYQWNMD--IIGVPEV 199

BLAST of CsaV3_3G007060 vs. TAIR 10
Match: AT3G46100.1 (Histidyl-tRNA synthetase 1 )

HSP 1 Score: 49.7 bits (117), Expect = 2.0e-06
Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 0

Query: 91  IEQCWQYERMIRGWRCEHYQWDMDISIIGVVEV 124
           I QCW+YERM RG R EHYQW+MD  IIGV +V
Sbjct: 169 IGQCWRYERMTRGRRREHYQWNMD--IIGVPQV 199

BLAST of CsaV3_3G007060 vs. TAIR 10
Match: AT2G29080.1 (FTSH protease 3 )

HSP 1 Score: 48.9 bits (115), Expect = 3.5e-06
Identity = 31/79 (39.24%), Postives = 42/79 (53.16%), Query Frame = 0

Query: 57  DIVNVCSEATALIAARNESRLVTMGHFEAVIDKVIEQCWQYERMIR-------------- 116
           DI NVC+EA ALIAAR+E   VTM HFE+ ID+VI    +  R+I               
Sbjct: 532 DIANVCNEA-ALIAARHEGATVTMAHFESAIDRVIGGLEKKNRVISKLERRTVAYHESGH 591

Query: 117 ---GWRCEHYQWDMDISII 119
              GW  EH +  + ++I+
Sbjct: 592 AVVGWFLEHAEPLLKVTIV 609

BLAST of CsaV3_3G007060 vs. TAIR 10
Match: AT1G07510.1 (FTSH protease 10 )

HSP 1 Score: 47.8 bits (112), Expect = 7.8e-06
Identity = 30/79 (37.97%), Postives = 42/79 (53.16%), Query Frame = 0

Query: 57  DIVNVCSEATALIAARNESRLVTMGHFEAVIDKVIEQCWQYERMI--------------- 116
           DI NVC+EA ALIAAR+E   VTM HF++ ID+VI    +  R+I               
Sbjct: 538 DIANVCNEA-ALIAARHEGATVTMAHFDSAIDRVIGGLEKKNRVISKLERRTVAYHESGH 597

Query: 117 --RGWRCEHYQWDMDISII 119
              GW  EH +  + ++I+
Sbjct: 598 AVAGWFLEHAEPLLKVTIV 615

BLAST of CsaV3_3G007060 vs. TAIR 10
Match: AT1G05055.1 (general transcription factor II H2 )

HSP 1 Score: 41.6 bits (96), Expect = 5.6e-04
Identity = 29/78 (37.18%), Postives = 38/78 (48.72%), Query Frame = 0

Query: 16  IDNKSIYHAQYRRRIPSPTSLAANAPIQKETCCFDSWICWRDIVNVCSEATALIAARNES 75
           IDN +IYHAQYRRR+   ++ AA   IQK        I +  IV   S A A +  R   
Sbjct: 50  IDNSAIYHAQYRRRLRMLSAAAAGTRIQK------GLIRYLYIVIDFSRAAAEMDFRPSR 109

Query: 76  RLVTMGHFEAVIDKVIEQ 94
             +   H EA I +  +Q
Sbjct: 110 MAIMAKHVEAFIREFFDQ 121

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8650205.11.6e-69100.00hypothetical protein Csa_010979 [Cucumis sativus][more]
XP_031738931.18.1e-0588.46protein BONZAI 2 isoform X3 [Cucumis sativus] >XP_031738932.1 protein BONZAI 2 i... [more]
XP_031738934.18.1e-0588.46protein BONZAI 2 isoform X4 [Cucumis sativus][more]
RVX05079.11.8e-0469.44Histidine--tRNA ligase, chloroplastic/mitochondrial [Vitis vinifera][more]
XP_034913837.12.3e-0475.76histidine--tRNA ligase, chloroplastic/mitochondrial [Populus alba][more]
Match NameE-valueIdentityDescription
O824132.9e-0569.70Histidine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3... [more]
Q84WU84.9e-0539.24ATP-dependent zinc metalloprotease FTSH 3, mitochondrial OS=Arabidopsis thaliana... [more]
Q8S2A76.4e-0568.57ATP-dependent zinc metalloprotease FTSH 3, mitochondrial OS=Oryza sativa subsp. ... [more]
Q8VZI81.1e-0437.97ATP-dependent zinc metalloprotease FTSH 10, mitochondrial OS=Arabidopsis thalian... [more]
Q0DHL44.2e-0462.86ATP-dependent zinc metalloprotease FTSH 8, mitochondrial OS=Oryza sativa subsp. ... [more]
Match NameE-valueIdentityDescription
A0A438J7Y98.7e-0569.44Histidine--tRNA ligase OS=Vitis vinifera OX=29760 GN=VvCHDp000673_5 PE=4 SV=1[more]
A0A4S4E0243.3e-0443.94Histidine--tRNA ligase OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_01488... [more]
A0A0V0IUW07.4e-0439.24Putative ovule protein OS=Solanum chacoense OX=4108 PE=3 SV=1[more]
A0A0V0IT457.4e-0439.24Putative ovule protein OS=Solanum chacoense OX=4108 PE=3 SV=1[more]
A0A0V0IUL97.4e-0439.24Putative ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like OS=Solanu... [more]
Match NameE-valueIdentityDescription
AT5G03406.11.2e-0669.70Class II aaRS and biotin synthetases superfamily protein [more]
AT3G46100.12.0e-0669.70Histidyl-tRNA synthetase 1 [more]
AT2G29080.13.5e-0639.24FTSH protease 3 [more]
AT1G07510.17.8e-0637.97FTSH protease 10 [more]
AT1G05055.15.6e-0437.18general transcription factor II H2 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.8.60coord: 31..99
e-value: 4.7E-5
score: 25.2

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G007060.1CsaV3_3G007060.1mRNA