CsaV3_3G007060 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTCGTGGAAAGCCTTGCAAGAGGACGAGTGTGGACTCCTTGATCGATAATAAGTCAATTTACCATGCTCAGTATCGAAGGCGTATTCCTTCCCCTACTTCCTTAGCAGCCAATGCTCCAATTCAGAAGGGTCTTATTCCCTGTCTCTATATCGCCATTGACTTCTCTAGGCTCTTTTTTTTTTTTCTTCCACGTCTCCACTATTACATTTGCAAATGTTCCATCTGTTTGATTTGTTGTATTCTGTGCCTTGGGCTCTAACCTGATGACTGGTTTTTTAAAGTTATCTTAAGTAGTTAAAGTTTGATCAAGAGCCATCTTACTTTTCGCAGAGACTTGCTGCTTTGACTCCTGGATTTGCTGGAGAGACATTGTGAATGTTTGCAGTGAAGCTACTGCTTTAATTGCTGCTAGAAACGAAAGTAGATTGGTCACTATGGGACACTTTGAGGCAGTTATCGACAAAGTCATAGGTGGCCTGGAAAAATATAAGATATTTTGTTGATCACCCACTACTTAAGTGGAGAGCTCTACATTTTCTTCTTTTTTCCTTTTCTGAAAAGAAATACAAAAAACTTTTTCTTCTTAATTAAACACTAACACAATCAAAGCATCGCTCTCTTATTTCTTTCTCTCCTGCTTTCTTTGATATAATCTTTTCCTTTTATGTATTCATCCATTTTGCCTCCATTATTGACTTAAATTAAATCTTAGGAAAGACAACATAAAACTTGAGAATTCCCTTGAGAAGTTCATATAAGTCTATCCTAGAAAATTTTCGAACTGGGAATCATGACACATTTGATTTGTTCTGCATTTCCAATCAATTGTTTAATTATGTGATTCTAGTTCATCGGCTTGTCATAGATGATTGTTTCAGTTAGTCTGGGCGGCTTGCTAAATAAGCCATATTTGCTTTCAGTGAATGGAGATTAGTTTTAGTTTATCTCATTCATGTTGTTATTGTAATTAGGTATCATTTGATATTGGGTTTTAGAACTCTTTAAAGGTGTCTTTCTCTACTAAGTTTAGTGATGAATTAAAGTTACAGATTGAACTTTTCTTATAAAAAAAATGTTACAGATTGAATTTGATCATGTGTTATCTTTGTATCCAGGTACATATGCCATAATTTGATCTCCATAATTTTTTTCTCTTCCAGCAAATCATTGCCCCTTCCATTTAAATGGTTTACTGCAGAGCAATGTTGGCAGTATGAGAGAATGATTAGAGGTTGGCGGTGTGAGCATTACCAATGGGATATGGATATCAGTATCATTGGAGTAGTTGAGGTTATGATATGTTAA ATGGGTCGTGGAAAGCCTTGCAAGAGGACGAGTGTGGACTCCTTGATCGATAATAAGTCAATTTACCATGCTCAGTATCGAAGGCGTATTCCTTCCCCTACTTCCTTAGCAGCCAATGCTCCAATTCAGAAGGAGACTTGCTGCTTTGACTCCTGGATTTGCTGGAGAGACATTGTGAATGTTTGCAGTGAAGCTACTGCTTTAATTGCTGCTAGAAACGAAAGTAGATTGGTCACTATGGGACACTTTGAGGCAGTTATCGACAAAGTCATAGAGCAATGTTGGCAGTATGAGAGAATGATTAGAGGTTGGCGGTGTGAGCATTACCAATGGGATATGGATATCAGTATCATTGGAGTAGTTGAGGTTATGATATGTTAA ATGGGTCGTGGAAAGCCTTGCAAGAGGACGAGTGTGGACTCCTTGATCGATAATAAGTCAATTTACCATGCTCAGTATCGAAGGCGTATTCCTTCCCCTACTTCCTTAGCAGCCAATGCTCCAATTCAGAAGGAGACTTGCTGCTTTGACTCCTGGATTTGCTGGAGAGACATTGTGAATGTTTGCAGTGAAGCTACTGCTTTAATTGCTGCTAGAAACGAAAGTAGATTGGTCACTATGGGACACTTTGAGGCAGTTATCGACAAAGTCATAGAGCAATGTTGGCAGTATGAGAGAATGATTAGAGGTTGGCGGTGTGAGCATTACCAATGGGATATGGATATCAGTATCATTGGAGTAGTTGAGGTTATGATATGTTAA MGRGKPCKRTSVDSLIDNKSIYHAQYRRRIPSPTSLAANAPIQKETCCFDSWICWRDIVNVCSEATALIAARNESRLVTMGHFEAVIDKVIEQCWQYERMIRGWRCEHYQWDMDISIIGVVEVMIC* Homology
BLAST of CsaV3_3G007060 vs. NCBI nr
Match: KAE8650205.1 (hypothetical protein Csa_010979 [Cucumis sativus]) HSP 1 Score: 272.7 bits (696), Expect = 1.6e-69 Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0
BLAST of CsaV3_3G007060 vs. NCBI nr
Match: XP_031738931.1 (protein BONZAI 2 isoform X3 [Cucumis sativus] >XP_031738932.1 protein BONZAI 2 isoform X3 [Cucumis sativus] >XP_031738933.1 protein BONZAI 2 isoform X3 [Cucumis sativus]) HSP 1 Score: 57.8 bits (138), Expect = 8.1e-05 Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 0
BLAST of CsaV3_3G007060 vs. NCBI nr
Match: XP_031738934.1 (protein BONZAI 2 isoform X4 [Cucumis sativus]) HSP 1 Score: 57.8 bits (138), Expect = 8.1e-05 Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 0
BLAST of CsaV3_3G007060 vs. NCBI nr
Match: RVX05079.1 (Histidine--tRNA ligase, chloroplastic/mitochondrial [Vitis vinifera]) HSP 1 Score: 56.6 bits (135), Expect = 1.8e-04 Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 0
BLAST of CsaV3_3G007060 vs. NCBI nr
Match: XP_034913837.1 (histidine--tRNA ligase, chloroplastic/mitochondrial [Populus alba]) HSP 1 Score: 56.2 bits (134), Expect = 2.3e-04 Identity = 25/33 (75.76%), Postives = 27/33 (81.82%), Query Frame = 0
BLAST of CsaV3_3G007060 vs. ExPASy Swiss-Prot
Match: O82413 (Histidine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g46100 PE=2 SV=1) HSP 1 Score: 49.7 bits (117), Expect = 2.9e-05 Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 0
BLAST of CsaV3_3G007060 vs. ExPASy Swiss-Prot
Match: Q84WU8 (ATP-dependent zinc metalloprotease FTSH 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=FTSH3 PE=1 SV=1) HSP 1 Score: 48.9 bits (115), Expect = 4.9e-05 Identity = 31/79 (39.24%), Postives = 42/79 (53.16%), Query Frame = 0
BLAST of CsaV3_3G007060 vs. ExPASy Swiss-Prot
Match: Q8S2A7 (ATP-dependent zinc metalloprotease FTSH 3, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=FTSH3 PE=2 SV=1) HSP 1 Score: 48.5 bits (114), Expect = 6.4e-05 Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 0
BLAST of CsaV3_3G007060 vs. ExPASy Swiss-Prot
Match: Q8VZI8 (ATP-dependent zinc metalloprotease FTSH 10, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=FTSH10 PE=1 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 1.1e-04 Identity = 30/79 (37.97%), Postives = 42/79 (53.16%), Query Frame = 0
BLAST of CsaV3_3G007060 vs. ExPASy Swiss-Prot
Match: Q0DHL4 (ATP-dependent zinc metalloprotease FTSH 8, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=FTSH8 PE=3 SV=1) HSP 1 Score: 45.8 bits (107), Expect = 4.2e-04 Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 0
BLAST of CsaV3_3G007060 vs. ExPASy TrEMBL
Match: A0A438J7Y9 (Histidine--tRNA ligase OS=Vitis vinifera OX=29760 GN=VvCHDp000673_5 PE=4 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 8.7e-05 Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 0
BLAST of CsaV3_3G007060 vs. ExPASy TrEMBL
Match: A0A4S4E024 (Histidine--tRNA ligase OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_014883 PE=4 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 3.3e-04 Identity = 29/66 (43.94%), Postives = 37/66 (56.06%), Query Frame = 0
BLAST of CsaV3_3G007060 vs. ExPASy TrEMBL
Match: A0A0V0IUW0 (Putative ovule protein OS=Solanum chacoense OX=4108 PE=3 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 7.4e-04 Identity = 31/79 (39.24%), Postives = 43/79 (54.43%), Query Frame = 0
BLAST of CsaV3_3G007060 vs. ExPASy TrEMBL
Match: A0A0V0IT45 (Putative ovule protein OS=Solanum chacoense OX=4108 PE=3 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 7.4e-04 Identity = 31/79 (39.24%), Postives = 43/79 (54.43%), Query Frame = 0
BLAST of CsaV3_3G007060 vs. ExPASy TrEMBL
Match: A0A0V0IUL9 (Putative ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like OS=Solanum chacoense OX=4108 PE=3 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 7.4e-04 Identity = 31/79 (39.24%), Postives = 43/79 (54.43%), Query Frame = 0
BLAST of CsaV3_3G007060 vs. TAIR 10
Match: AT5G03406.1 (Class II aaRS and biotin synthetases superfamily protein ) HSP 1 Score: 50.4 bits (119), Expect = 1.2e-06 Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 0
BLAST of CsaV3_3G007060 vs. TAIR 10
Match: AT3G46100.1 (Histidyl-tRNA synthetase 1 ) HSP 1 Score: 49.7 bits (117), Expect = 2.0e-06 Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 0
BLAST of CsaV3_3G007060 vs. TAIR 10
Match: AT2G29080.1 (FTSH protease 3 ) HSP 1 Score: 48.9 bits (115), Expect = 3.5e-06 Identity = 31/79 (39.24%), Postives = 42/79 (53.16%), Query Frame = 0
BLAST of CsaV3_3G007060 vs. TAIR 10
Match: AT1G07510.1 (FTSH protease 10 ) HSP 1 Score: 47.8 bits (112), Expect = 7.8e-06 Identity = 30/79 (37.97%), Postives = 42/79 (53.16%), Query Frame = 0
BLAST of CsaV3_3G007060 vs. TAIR 10
Match: AT1G05055.1 (general transcription factor II H2 ) HSP 1 Score: 41.6 bits (96), Expect = 5.6e-04 Identity = 29/78 (37.18%), Postives = 38/78 (48.72%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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