CsaV3_3G006400 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G006400
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3: 5563162 .. 5566976 (+)
RNA-Seq ExpressionCsaV3_3G006400
SyntenyCsaV3_3G006400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACCTTCCTCTTCTTCAGCCATGGCCATCATTTCCCACTCTCGCACTTCACCACACATTAACAGAGAAGGCACATGTGGGAGGGTCACCAGTTGGGGAAAAGAAATTGAACCCAAGAACGTGATGAACAGGTGAAGAAATTCCTATTTTATTGATGTAACTTTCAACTTTTGCCAACGGCGGAATAGTGTGATTGTTTTTTGTTTCTTGTTTTTCTTTGTTTTTTTTCAATTTTTCTTTTTGTTTGATTTCGGACATCGAGGAATTCTTTTGCTTGATTGTTGGGAAAGTAAAAGGATGCTTGAGTGTGGGGACTTAGATAGAAAAGAAAAGGGGAAAATATATGCTTCAATCTATTTTCAACCTCTTCTTTATTGTGTTTTCTTTTCATGGGGCCCTTCACTTTTTCAAAAAAAAATGTCTTACATGGAATTGGGAACTTGGTTTTTCTCTCTTTTTCTGTTGTGCCCTTTTGGATGAAATTAAATTTATCGTCCATTTAGTGAAGAAAGTAATGAACCGCATCTCAAACCCCATCAAATCTTGTTCTGATGAGCCATTTGTCTTCCTATGATTTATGAATTTTTTTTTTATATCAGTAAGTTTCTTGGTCAGCATCAACTTATGGCACAGGACACTCTAATATTTCGGGTGTTAAGAAAATTTATAAGATGTTAAATTCCAAGTAGGTGGTTACGTGGATTGAACCATCACCTCTTAGTTCTGAGTGTTTGGTTTCCTTTCTTTGCTTGTTTTAGCTTTCGAAGAGTGGGGCAAATTTTGTTCTATTTGTGTGACTTTTTGTGGCCTGGTGTTGGGCACTTTATGTGTTTGAGCCTCAGTCAACAAACAGATGATTCTCTTATAACCATTTGAGTCAATTTTTTAGCCGAAACAAATGTATGTTGTTTTAAAATTTACTAGTTGGTTTTTTTAAACTAATAGGATTTCGATGTCTTTATCAGACATGGTGATTGTTCTGTTGACAAAAAGATTTCAATCAATGCATTTTAGGCAGAAGAACCGCATAACCGCATATGTGTTGTAATTATTACAGTTTTCTTTTCCACAACACTTTGATTTCTTTGGTAAGGAGAGAAGTCTTTGCTTAACATTTTTGATTCCTTCATATCAGGTGGATTGTAAATTTGTAATGCATTAAAATATCACAATATCTTTATAAAAAAATTAACACAAAAAATACAATAAAATAGAACTGGTCTGTAAGTACGGGTTATCCGTACAAAAAACCCCTCAATGGTGCCAAGTAAAGACTTGGGGAGGAATTAGGAATGATGGAGGAAGGAGATGCAAAATGCCCCCTCATAGTCCAACTTAGATTTTAAAATTTTCTCTCTTACATTTTATCCGCGAAATTTTCAAAATCAAAAGAGTATATTTTTTAAATGCTTAAATTGCAATTTTTTTCCCTTTGTTAAGAAATTTCTTACCCTTGTACCCTGTGTTTGGTGACATTCTCTAAAAGATCGTGTGTTAAAGCCACCAACGAAAAACAACTTAAAATTAATGAAGATAAAGTTGAAGACATTGGTAGTAATCTTCAAGATTTGGCTGAGATGTTTGGAGATACCCTCCGATGTCTCGAGGACTAGAAAACTTAATAACGTGAAACTCTTCTTTGTTTTTTAAAGCCTAGCTTTCGGGGAGGCAAAGCCTCTCTAAAGATTAGTGGGAGATGAGCATATGCACAATATGAGTGGAGCCCACAATACCCAGTTGTTAAAAAAATTAAATTAAAGTAATAAAGAAAAACTGATGGTATGGTTTAATTACTTTAACACATTAAACTTGCAGGTGGTACAGCAAATGGCTTTAGTGTTTCTGACAAAAGTTATGGGTTCCTCTCAACAGGCTATGTGAAGAGGAGAGATATATGAGGAATAATTGTGGTCTACATCACATTCTTTCCAACCTCTGCTCTTTTTTGCTACCAAACCATTTTCTTTCTTCTCTTGAATTATATGGATGTGCTTGTGCTTGGTACAGCATAGCTGTAAGGTGAGCAAAACATTATTCTCTTATGTTTCTCTTTATTATGTTGTTTTTTATCTTTATATTCTTTCTCTGAAGGAATAATTTGCTACCTATTTTTTTTATTTTTTTTTTATTTTCTCTTTTCATTCTTTTTGATAGAAAATGGTTACACAAACAAGACATGCCTTCACTTTGGGCCAAACTTTTGTTTTGCTTAAATTAATATATCAATATCATGACTGCTTTTTGTATTCTTTTTCCTTTCATCTGATTTCATGGTGTTTTTATATGAGATTGTGTGAGATTTGCTACCCTCCCCATGATGACATATGAAGGGACTTATTCAGATTGAACTTATTCAATACTTATTCATTATGAATTGGAGAATTTCAAAATGTATTTTTAGGCTAAAAGGTCTGTAAAGAAAACTTGAGAAATTTTTAGTGTTACTCTTATTTCATTGACAATAATTTTTTTTAACAGCCATAGCATAGTGACCAGTTCTAATAATGTCTCCATAAAAACCATTATCACAGAATGATTAATTATATCAAAGCAAAGCATATAGTTTATCTTTGTTTCCTCTTCTACTCTGTCCGTAAATATGGATGAAGAATCATTGTTGAGGTAAAAGTAATGGTTCTGAGTATGGGTTAGTGCATACAATTTGATTCAATGTTATCTTTAAAATTTAGGAGATGATCTGAATGGGGCAGGCTGTAAAACCTCCTCCAACTTCCTAAACACCTTTAGTTACCTCACCCATGGTGACTGGGTTTAGTTTAGGCTAAAATCTAAATGAGATTTATTTCTTTTAAAATGTGGAAACTTTTTGCAATTACCAATGAGCCCTTATTTTGGCTTCCCAGACAGGGAGGGCCATTCTTTTGCTTTCTTAAAGTTTGTTGCTTCAGACAAAGTATAGTATTCACTAAGCTAGGCATCACAATTTAATGAAAAAAGGTGTAGTAATCAAATTATAATTAACTCTTTTCCCATTTATTTTATTTTTCTATAGTGGAAAGTGTGAGTTGGTGCGGGTTGGATGCTTTCTTTATTAAATAATGGTTTGAGAAAAATAGATGTCTTGTTTTTTCATGACAGGTTAGCTATGGAATTGGAAGTATTGGATGCAAACTATCTCTCAAAACTAAATAAAAACTTTAGATGCTCTTAAGAGACTGAGTAGCTTATAACAGATGGTTTTCATCGTTTTTGATATCGTGTCATCAGAATATAACTAACTACCATCACAGAGGATCTTGGACTTCTTCATCCTCGTTCATTGGCTTCTGTAAGTTCTTGCTTTTTGTTTATTATTCTCTTCACATTCTTATTTTAACACTTCCACACAAACAGCACCCGTCCCCTGCCCTTCCTTCCCTGAACGAGGGGAGGCCTCGGTATCTTAATCATTGAAGCATGCACATTTAGGGAAAACAAAAAACATTGCAAGTTACTTTTCTGTATTTAGTTGAAGATGTAAACAAAGATAAGACAAAGAGCCACCTTCCCCCACCTGTGACTCCATATTGTGTGTGCATGTGTGTGGTGTCACCTTTTAGTTTTTTCGAAGTCTTTATGACAGTTTTAAACTTTTCTAATTTGCCCCTTCCTGCTTTAGTACAATTGACTTCATAAGATTTTTGCCCTCCTTATAACAAAATTTTTGGCTCGGCCTTGGAGATCGGATTCAAATAAGAACATGCTGAGAAAATGAGTTTCTTTTCAGGGCTAAGGAGCCATCGGCATTACATTCTTATGTAGAACCCATTTTCATCAGCATCACTTTTGTTCCAAGCAAAGCATTCGGTTGA

mRNA sequence

ATGAAACCTTCCTCTTCTTCAGCCATGGCCATCATTTCCCACTCTCGCACTTCACCACACATTAACAGAGAAGGCACATGTGGGAGGGTCACCAGTTGGGGAAAAGAAATTGAACCCAAGAACGTGATGAACAGGCTATGTGAAGAGGAGAGATATATGAGGAATAATTGTGGTCTACATCACATTCTTTCCAACCTCTGCTCTTTTTTGCTACCAAACCATTTTCTTTCTTCTCTTGAATTATATGGATGTGCTTGTGCTTGGTACAGCATAGCTGTAAGTGGAAAGTGTGAGTTGGTGCGGGTTAGCTATGGAATTGGAAATGTAAACAAAGATAAGACAAAGAGCCACCTTCCCCCACCTGTGACTCCATATTGTGTGTGCATGGCTAAGGAGCCATCGGCATTACATTCTTATGTAGAACCCATTTTCATCAGCATCACTTTTGTTCCAAGCAAAGCATTCGGTTGA

Coding sequence (CDS)

ATGAAACCTTCCTCTTCTTCAGCCATGGCCATCATTTCCCACTCTCGCACTTCACCACACATTAACAGAGAAGGCACATGTGGGAGGGTCACCAGTTGGGGAAAAGAAATTGAACCCAAGAACGTGATGAACAGGCTATGTGAAGAGGAGAGATATATGAGGAATAATTGTGGTCTACATCACATTCTTTCCAACCTCTGCTCTTTTTTGCTACCAAACCATTTTCTTTCTTCTCTTGAATTATATGGATGTGCTTGTGCTTGGTACAGCATAGCTGTAAGTGGAAAGTGTGAGTTGGTGCGGGTTAGCTATGGAATTGGAAATGTAAACAAAGATAAGACAAAGAGCCACCTTCCCCCACCTGTGACTCCATATTGTGTGTGCATGGCTAAGGAGCCATCGGCATTACATTCTTATGTAGAACCCATTTTCATCAGCATCACTTTTGTTCCAAGCAAAGCATTCGGTTGA

Protein sequence

MKPSSSSAMAIISHSRTSPHINREGTCGRVTSWGKEIEPKNVMNRLCEEERYMRNNCGLHHILSNLCSFLLPNHFLSSLELYGCACAWYSIAVSGKCELVRVSYGIGNVNKDKTKSHLPPPVTPYCVCMAKEPSALHSYVEPIFISITFVPSKAFG*
Homology
[Close]
BLAST of CsaV3_3G006400 vs. NCBI nr
Match: KAE8650182.1 (hypothetical protein Csa_009985 [Cucumis sativus])

HSP 1 Score: 328.6 bits (841), Expect = 3.0e-86
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0 

Query: 1   MKPSSSSAMAIISHSRTSPHINREGTCGRVTSWGKEIEPKNVMNRLCEEERYMRNNCGLH 60
           MKPSSSSAMAIISHSRTSPHINREGTCGRVTSWGKEIEPKNVMNRLCEEERYMRNNCGLH
Sbjct: 1   MKPSSSSAMAIISHSRTSPHINREGTCGRVTSWGKEIEPKNVMNRLCEEERYMRNNCGLH 60

Query: 61  HILSNLCSFLLPNHFLSSLELYGCACAWYSIAVSGKCELVRVSYGIGNVNKDKTKSHLPP 120
           HILSNLCSFLLPNHFLSSLELYGCACAWYSIAVSGKCELVRVSYGIGNVNKDKTKSHLPP
Sbjct: 61  HILSNLCSFLLPNHFLSSLELYGCACAWYSIAVSGKCELVRVSYGIGNVNKDKTKSHLPP 120

Query: 121 PVTPYCVCMAKEPSALHSYVEPIFISITFVPSKAFG 157
           PVTPYCVCMAKEPSALHSYVEPIFISITFVPSKAFG
Sbjct: 121 PVTPYCVCMAKEPSALHSYVEPIFISITFVPSKAFG 156

[Close]
BLAST of CsaV3_3G006400 vs. NCBI nr
Match: XP_031739301.1 (uncharacterized protein LOC101206733 isoform X2 [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 8.1e-47
Identity = 95/99 (95.96%), Postives = 95/99 (95.96%), Query Frame = 0 

Query: 1   MKPSSSSAMAIISHSRTSPHINREGTCGRVTSWGKEIEPKNVMNRLCEEERYMRNNCGLH 60
           MKPSSSSAMAIISHSRTSPHINREGTCGRVTSWGKEIEPKNVMNRLCEEERYMRNNCGLH
Sbjct: 1   MKPSSSSAMAIISHSRTSPHINREGTCGRVTSWGKEIEPKNVMNRLCEEERYMRNNCGLH 60

Query: 61  HILSNLCSFLLPNHFLSSLELYGCACAWYSIAVSGKCEL 100
           HILSNLCSFLLPNHFLSSLELYGCACAWYSIAV    EL
Sbjct: 61  HILSNLCSFLLPNHFLSSLELYGCACAWYSIAVRLAMEL 99

[Close]
BLAST of CsaV3_3G006400 vs. NCBI nr
Match: XP_022136451.1 (uncharacterized protein LOC111008157 isoform X2 [Momordica charantia])

HSP 1 Score: 98.6 bits (244), Expect = 5.1e-17
Identity = 59/118 (50.00%), Postives = 61/118 (51.69%), Query Frame = 0 

Query: 29  RVTSWGKEIEPKNVMNRLCEEERYMRNNCGLHHILSNLCSFLLPNHFLSSLELYGCACAW 88
           R    GK  E  NVM RL EEERYMRNNCGLHHILS LCSFL P HFLSSLE YG  CAW
Sbjct: 11  RAKEGGKRTEATNVMKRLFEEERYMRNNCGLHHILSYLCSFLPPTHFLSSLESYG--CAW 70

Query: 89  YSIAVSGKCELVRVSYGIGNVNKDKTKSHLPPPVTPYCVCMAKEPSALHSYVEPIFIS 147
           YSIAV                                    A+    +HSYVE IFIS
Sbjct: 71  YSIAV-----------------------------------RARNQQQIHSYVEAIFIS 91

[Close]
BLAST of CsaV3_3G006400 vs. ExPASy TrEMBL
Match: A0A6J1C3J3 (uncharacterized protein LOC111008157 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008157 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.5e-17
Identity = 59/118 (50.00%), Postives = 61/118 (51.69%), Query Frame = 0 

Query: 29  RVTSWGKEIEPKNVMNRLCEEERYMRNNCGLHHILSNLCSFLLPNHFLSSLELYGCACAW 88
           R    GK  E  NVM RL EEERYMRNNCGLHHILS LCSFL P HFLSSLE YG  CAW
Sbjct: 11  RAKEGGKRTEATNVMKRLFEEERYMRNNCGLHHILSYLCSFLPPTHFLSSLESYG--CAW 70

Query: 89  YSIAVSGKCELVRVSYGIGNVNKDKTKSHLPPPVTPYCVCMAKEPSALHSYVEPIFIS 147
           YSIAV                                    A+    +HSYVE IFIS
Sbjct: 71  YSIAV-----------------------------------RARNQQQIHSYVEAIFIS 91

The following BLAST results are available for this feature:
BLAST of CsaV3_3G006400 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8650182.13.0e-86100.00hypothetical protein Csa_009985 [Cucumis sativus][more]
XP_031739301.18.1e-4795.96uncharacterized protein LOC101206733 isoform X2 [Cucumis sativus][more]
XP_022136451.15.1e-1750.00uncharacterized protein LOC111008157 isoform X2 [Momordica charantia][more]
BLAST of CsaV3_3G006400 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G006400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C3J32.5e-1750.00uncharacterized protein LOC111008157 isoform X2 OS=Momordica charantia OX=3673 G... [more]
BLAST of CsaV3_3G006400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G006400.1CsaV3_3G006400.1mRNA