CsaV3_3G005820 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G005820
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3: 5049606 .. 5049868 (-)
RNA-Seq ExpressionCsaV3_3G005820
SyntenyCsaV3_3G005820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAGCTTTTACGTGCTTGAGCCACCAATAACTGGAGGGGAAGAAGTGGATGGATATGCTTCAATGAGTGAAGCAACAACCAATACACAATCCTACCGCGCACATACATCAAATAGGTTTAGTAAGAAAAGAGCAAGAAGTGTGGACCTATTGGTAGCATCAGTAAATGGTCTTAAGAATGTTATCAGCAGACACATCTTACAAGTGGTAATGATAATATTCAAGAGATTGTTGCGTTTTATTGACAGGTAGTTGAATGA

mRNA sequence

ATGGATAGCTTTTACGTGCTTGAGCCACCAATAACTGGAGGGGAAGAAGTGGATGGATATGCTTCAATGAGTGAAGCAACAACCAATACACAATCCTACCGCGCACATACATCAAATAGGTTTAGTAAGAAAAGAGCAAGAAGTGTGGACCTATTGGTAGCATCAGTAGTTGAATGA

Coding sequence (CDS)

ATGGATAGCTTTTACGTGCTTGAGCCACCAATAACTGGAGGGGAAGAAGTGGATGGATATGCTTCAATGAGTGAAGCAACAACCAATACACAATCCTACCGCGCACATACATCAAATAGGTTTAGTAAGAAAAGAGCAAGAAGTGTGGACCTATTGGTAGCATCAGTAGTTGAATGA

Protein sequence

MDSFYVLEPPITGGEEVDGYASMSEATTNTQSYRAHTSNRFSKKRARSVDLLVASVVE*
Homology
[Close]
BLAST of CsaV3_3G005820 vs. NCBI nr
Match: KGN56195.1 (hypothetical protein Csa_009969 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 2.6e-22
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 1  MDSFYVLEPPITGGEEVDGYASMSEATTNTQSYRAHTSNRFSKKRARSVDLLVASVVE 59
          MDSFYVLEPPITGGEEVDGYASMSEATTNTQSYRAHTSNRFSKKRARSVDLLVASVVE
Sbjct: 1  MDSFYVLEPPITGGEEVDGYASMSEATTNTQSYRAHTSNRFSKKRARSVDLLVASVVE 58

[Close]
BLAST of CsaV3_3G005820 vs. NCBI nr
Match: KAA0041258.1 (hypothetical protein E6C27_scaffold128G002380 [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 3.2e-12
Identity = 44/56 (78.57%), Postives = 47/56 (83.93%), Query Frame = 0 

Query: 1  MDSFYVLEPPITGGEEVDGYASMSEATTNTQSYRAHTSNRFSKKRARSVDLLVASV 57
          MD FYV +PPI G EEVDG+ASMSE TTNTQS  AHTSNR SKKRARSVD LVA+V
Sbjct: 10 MDGFYVRKPPIVGEEEVDGFASMSETTTNTQSI-AHTSNRSSKKRARSVDPLVAAV 64

[Close]
BLAST of CsaV3_3G005820 vs. ExPASy TrEMBL
Match: A0A0A0L2J4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G099560 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.2e-22
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 1  MDSFYVLEPPITGGEEVDGYASMSEATTNTQSYRAHTSNRFSKKRARSVDLLVASVVE 59
          MDSFYVLEPPITGGEEVDGYASMSEATTNTQSYRAHTSNRFSKKRARSVDLLVASVVE
Sbjct: 1  MDSFYVLEPPITGGEEVDGYASMSEATTNTQSYRAHTSNRFSKKRARSVDLLVASVVE 58

[Close]
BLAST of CsaV3_3G005820 vs. ExPASy TrEMBL
Match: A0A5A7TE82 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G002380 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.5e-12
Identity = 44/56 (78.57%), Postives = 47/56 (83.93%), Query Frame = 0 

Query: 1  MDSFYVLEPPITGGEEVDGYASMSEATTNTQSYRAHTSNRFSKKRARSVDLLVASV 57
          MD FYV +PPI G EEVDG+ASMSE TTNTQS  AHTSNR SKKRARSVD LVA+V
Sbjct: 10 MDGFYVRKPPIVGEEEVDGFASMSETTTNTQSI-AHTSNRSSKKRARSVDPLVAAV 64

The following BLAST results are available for this feature:
BLAST of CsaV3_3G005820 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56195.12.6e-22100.00hypothetical protein Csa_009969 [Cucumis sativus][more]
KAA0041258.13.2e-1278.57hypothetical protein E6C27_scaffold128G002380 [Cucumis melo var. makuwa][more]
BLAST of CsaV3_3G005820 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G005820 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2J41.2e-22100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G099560 PE=4 SV=1[more]
A0A5A7TE821.5e-1278.57Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of CsaV3_3G005820 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G005820.1CsaV3_3G005820.1mRNA