CsaV3_3G004780 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G004780
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3: 4040304 .. 4044874 (+)
RNA-Seq ExpressionCsaV3_3G004780
SyntenyCsaV3_3G004780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAATCTGGCAGATAAGAGTGCAGCGTACGGCGGCCGCCGCTGATACTGTGGCAGGCACGAGCGGCGTGCGTCGGAGCGGGATGCAGTGGCTGTTAATGAGAGGGTGTGTGGGTGAACGTCAAATAGGGTTTATGAAAAATAGTTTTCTCATTTCAATCCCCCCAACAACTTGTATGGTAAAATGCATGTAAAAGTAAAATTACACACGATTTGACAAAACTAACCTCTTATATATATATACATTTCAAAGGTAGCTTAGTAATTTTGTTTTTTCTTCGATTCAATCTGAAATTAATTAAGAGATTCTTCCTAAAATTTAAAAACTCTCAACAAAATTTCTTTGTCTCTCGATCGAGTGTCATAGTGTGTTTTTTATTAAAAATTTGAAGTTTACCAAATACTTATTGGATCAAAGTTGTTTTGAGATAGCCTCAAGCTAATTGGGAACATAAAGCATTATGTAATATGATCTCTTTTCTACTCAATGTATCAACAATTTTGTTCTCTTTCCTGACTTGATGCTTGATAAGGTAGGATATCGAGCATGCATGTTGATACTTTTATGTGCTTGTAAATACTTGATGAAAAAGTGGTTTGTGAGGAGAATGAAATCCTTGATAAAACATAATGCTCCAATTGCTTTAGAACCCTAAGAATAAAACTTTGTTCATATGTACTTTATGTTGTCTAGAAGAGCTTAGTTTCTCACTAAAGAACTCCACTAGATGTTCTCGAGATAAAATTGTTGAGCTCCACAAGCATCTATTGACCCAATTCAATTCAGCTTCAATAAGTATCTATGCTACTTCAAAGGGATTGTTGAATACGGGTAGTTTTAGGACTGGTTGACGGTTAAGCTTTATCTTAATCCTTTCAAAGCCTTTATGTTGATTCTTTCTCATTAAAACTCTTTCTTTAGGCAGTCACTTATTGGGTTGTTATAAAGCTGAAATTTCTAATAAATGTTGGGTAGAGTGATGTCAATCCCATAATTAAAGTGTTTTCTCTATGGAATAATTTTTGTGCTTACCATTTTCTTCTTATTTCTAGTTGCACAACCAGGATCAGTACCTATGAGGGTTTTTTTTACGAACATTAAACAAGGTAATTTTTTATAGAAGTTTTATCTCTCAAATTTTATGCTTTTCTTTGTATTCTTATGTTAGAATGCATATCTAGAACTTTCAATCTAGTTTGATCAATAAAATTATGGAGAGTTCAAAATCTTGAAGTTAGAAACAAGTTCTCCTTTCTTCTCGATCTTTTATCAATCTTTTCCAAGCAAAAAATTGTTTAGCTTTCTTGGGGTTGTTTAGCTATTTATTTAATCGATATTCTTATTAGTGTTGTGGGAGTTCACTTGATTGAGGTAGTTCTGCTTATAAAAGACAATACAATCTGACTATCCAATTAAATCTATATTTTAAGAACTGGGTTGGAAATACCAGGTTGTCAATTCAACCAACTCGAAATATATAAAATGGATTATCAATTGAACCGGTTTAACCTCTGGATGAACTTTTGCATAAGTTTATTTTGGTAGTTTCACGGAAAGGAAAGATTATAAAAACTTAAAATTTAAAAAATGGGGACAAATTTCATTTCCTCAAATTTTGGTTAATTCCAAATGATAATTATCTTAAAGTGTTAAACCCCTCTTCTTCTCCCCTATAATTTGTCCTTTGACAATTACCCACGATTTATGCCCTTTCTCAATCGCCGTCGTCCACCTACGCTCACCCAGCCTCTTACTCACTCTCAGTAGCCACCCCCCTTGGTCGACGGAGTCCATAAATCGGCTCTCGCTCTTTCTCTCTCTCCATCGCTCACCATCTGTCTCTCTGGTCCTCCATCACCCTGCGGCACTCCATCTTTTTCTTGCCGGTAATATGCCATCGACTTTTTATTTTCCATTCTTTTGTTTGATTTCGTAATCTAGGAATTGCATTATATTTGTAAATATTCGGGATTGTGTGGAGCTAAAAATATCACATTCCTTCCTTCTTCGATTGTTTTTTTCCTTCCTCCCAGCCTAACTGAAAAGTTATTTGAGGTCAGTCCCGTTAATCTAAAATTTTGGATTGGTTAAAATTTGCAAAGAAAATGAATAAATTGATTTGAAAATTTGAATTTATTTATGGATTCTGACCCAATTTACTAGATTGATATTGAATTTTAAATTTGGTTAAAGTTTGTAAACGAAGGGATTGAAGTGATATGAAAAGTGTAATTTCTGTATAGATCACGTACCAGATTGAATAAGTTGTTCTGGATGGCAGTATTAATAAGATGCACTTCTTAAAATTGTACGATGTCTTGAAGATTAGGATTAGATTCTGTGACTATCTATTAAGTTATGATAGGCATAGGCTTTCATTAATTCAAATGTAGAAAGGTATATGAGATGTGATTTGCTTGTTTATGTTGCTTTCACCAAATGCTGGTGTGATGAGTTTAATTATTTTTATTTGACTTTTTCTGATAAATTTAGTTGTAAGCTAAATGGCTTGGCATTTTTCTTTTGATTATACTACCCTTTGGCACAAGGTCATTGCTCTTAAGTATGAGCCCCATCCCGTGCTGTTTTTGTCGAGTGAGGTTAAAGGCATCGGAATTTGTCGAAGGATATTTCTATAGAGCCTCCCCTCTTTTTCCCATTTCTTCTGTTGTGTGGTAGGAGAGGGTAAGGAAACATATTTATAGGAAGATTACTGGTCAGGGAGTTCAGTTTTCTTTTACTTTGGGTTTAGTTGCTCTTTGACCAGTAGAGAAGCAACTGTTGTCATCTCTTTGTTGTCGTTTGGGGGAGTTTGACTTTAGGCAGGAGATAGAATTTGTGCGCCAGGAATCCTGGCAATTTGTAAGGATTCTCATGTAATTCATTTTCCATTGTCTGTTGGATCCTTCTCGTTCTCCTTCTAGTAAGTCTATTTTTTTTCAGTGTTTTGGAGGATTAAGATTTCTTAGAAAGTGAAATTCTTTACTTCAAGTTCTACATGGACATGTGAACACTTCGAATCGGCCCTAAAGGAGGATATCGTTGTTAGTGGGCCTGTTTTTTTTTTTTTTTTTTGTTGGAAGTTGGAGGAAGATCTGAATCACATCTTTTAGAGCTGTGAGTTTGCAGATTCTATCTTGAATTTGTTCTTTGAAAGTTTTGGTTTTGTGCTTGCCCGTCAAAAGGACATTAGTGTTATATTCAGGAAGTTCCTCTTCCATCCACCACTTCTATTCAGGAAGTTTCTTGTGGTTGGAAGGTTTTGCGCTATTATCTTCTTCTTCTTTTAAATATGAAAGTGTATGCTATCATGTGGAATTGTGTAGGAGAAAGGAACAAAGTGTTTATAGGGTTGGAAAAGGAGCCCAATGATGTTGGGGTTCTTATTAGGTTTCATGTTTCTCTTTGGGATTTGACTTCATCTTTTTCCTTAGTGAAATTCATTTCTTTTTGAAGAATGTTTTGTTCTTAAGTGTTAATAAGTTAGTTAAGTAAAAAAATTTATATTCACAAGTTCTGATAATTTATTAAGTTTTGATGTTATGTTCCTATTTTTATAAGTTGAGTGGTTTGTTTTAATTTGATGAGTTAGTATTCATTTTCATGATAAGTTTGTTTAGGTGTTTTTTCTATATACGTTAGTGTATGGGCCAACTTACACATACTATGACTAATCTCACGAGACAACCAGCCTGACCTACAACATTTGGGTGTCATGGAAACCTTTATATTAAATTCTAGGTAGGTGACCACCATTGATTGAATCCATGACCTCTTGGCCCTTTGGCCTTTTTTTTATATTCCCATTACCACTAGGCCAACCCTCGAGGTTTTGTTATGTTCATGTTTCTTTTAGTTTTGTTTGTTTAAATTTTACAAGTTTACCATTTTTACGATAAGCTCGTTTAGTTCTATTGTTTATTTTAATTTGACGAGTAAGTATCTATTTTCATGATAAGTTTCTAAATTTGTTAAGGTTTATTGTTAATGTTTTGATAAGTTTGGTTTGAATTTGATAAGTTTAGTAGTGTTTATAAGTTTCGATAAGTTCGTTAAGTTTTGTTGTCGTGTTCATAAATTTTGATAAGTTCGTAGTTTACTTCGATTTAATACCATCAATGAAATTATGTTGTGTTTTTCATAAAAAAAAATAGTTTTTTTCAATTCCCAATTCTACTTCTTTCATTATTTCATTTCTTCATCTACGTCAGATTCTATGCACGTATGATTTTGACTTGAGAACAAATTGTACCACGTTTTATGAAACTATGAAAAACTAGGTGGATTTTATTTTATTTTTTGGCTGCACTGACAAAATGTTGCGCTCGACAAACCCAATCAATCATGTTATAGGTAAATAAACGATTAAGTTATACTTGGTGAAACTCTTGTTTCTTCATAACTTTGGCAAATTCCATTCAGATTCTAGACTTTGCTTTTTCTTGGCTTTTCAAATACTGAGATCATTGAATCTTTTGCTGGTAATTTGAACATAATTTTTATTTATTTATTTACTTTCATGCCTTATGGAACAATTCTTTTAATGTCTACTACAGGAAGTATTGGTGA

mRNA sequence

ATGAGAATCTGGCAGATAAGAGTGCAGCGTACGGCGGCCGCCGCTGATACTGTGGCAGGCACGAGCGGCGTGCGTCGGAGCGGGATGCAGTGGCTGTTAATGAGAGGGTGTGTGGGTGAACGTCAAATAGGGTTTATGAAAAATAGTTTTCTCATTTCAATCCCCCCAACAACTTGTATGCCACCCCCCTTGGTCGACGGAGTCCATAAATCGGCTCTCGCTCTTTCTCTCTCTCCATCGCTCACCATCTGTCTCTCTGGTCCTCCATCACCCTGCGGCACTCCATCTTTTTCTTGCCGGAAGTATTGGTGA

Coding sequence (CDS)

ATGAGAATCTGGCAGATAAGAGTGCAGCGTACGGCGGCCGCCGCTGATACTGTGGCAGGCACGAGCGGCGTGCGTCGGAGCGGGATGCAGTGGCTGTTAATGAGAGGGTGTGTGGGTGAACGTCAAATAGGGTTTATGAAAAATAGTTTTCTCATTTCAATCCCCCCAACAACTTGTATGCCACCCCCCTTGGTCGACGGAGTCCATAAATCGGCTCTCGCTCTTTCTCTCTCTCCATCGCTCACCATCTGTCTCTCTGGTCCTCCATCACCCTGCGGCACTCCATCTTTTTCTTGCCGGAAGTATTGGTGA

Protein sequence

MRIWQIRVQRTAAAADTVAGTSGVRRSGMQWLLMRGCVGERQIGFMKNSFLISIPPTTCMPPPLVDGVHKSALALSLSPSLTICLSGPPSPCGTPSFSCRKYW*
Homology
[Close]
BLAST of CsaV3_3G004780 vs. NCBI nr
Match: KAE8650125.1 (hypothetical protein Csa_010474 [Cucumis sativus])

HSP 1 Score: 217.2 bits (552), Expect = 6.5e-53
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MRIWQIRVQRTAAAADTVAGTSGVRRSGMQWLLMRGCVGERQIGFMKNSFLISIPPTTCM 60
           MRIWQIRVQRTAAAADTVAGTSGVRRSGMQWLLMRGCVGERQIGFMKNSFLISIPPTTCM
Sbjct: 1   MRIWQIRVQRTAAAADTVAGTSGVRRSGMQWLLMRGCVGERQIGFMKNSFLISIPPTTCM 60

Query: 61  PPPLVDGVHKSALALSLSPSLTICLSGPPSPCGTPSFSCRKYW 104
           PPPLVDGVHKSALALSLSPSLTICLSGPPSPCGTPSFSCRKYW
Sbjct: 61  PPPLVDGVHKSALALSLSPSLTICLSGPPSPCGTPSFSCRKYW 103

[Close]
BLAST of CsaV3_3G004780 vs. NCBI nr
Match: KAA0055845.1 (hypothetical protein E6C27_scaffold104G00210 [Cucumis melo var. makuwa] >TYK24069.1 hypothetical protein E5676_scaffold943G00390 [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-08
Identity = 39/57 (68.42%), Postives = 43/57 (75.44%), Query Frame = 0 

Query: 1  MRIWQIRVQRTAAAADTVAGTSGVRRSGMQWLLMRGCVGERQIGFMKNSF--LISIP 56
          MRI QIRVQ  AAAADTV+GTSGV   GMQWLL+ GCV E +IGFM+  F  L SIP
Sbjct: 1  MRIRQIRVQHIAAAADTVSGTSGVFPGGMQWLLVGGCVAEGEIGFMEKWFSPLGSIP 57

[Close]
BLAST of CsaV3_3G004780 vs. ExPASy TrEMBL
Match: A0A0A0L4Z6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G073855 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.0e-47
Identity = 96/103 (93.20%), Postives = 96/103 (93.20%), Query Frame = 0 

Query: 1   MRIWQIRVQRTAAAADTVAGTSGVRRSGMQWLLMRGCVGERQIGFMKNSFLISIPPTTCM 60
           MRIW    Q  A AADTVAGTSGVRRSGMQWLLMRGCVGERQIGFMKNSFLISIPPTTCM
Sbjct: 1   MRIW----QSPAPAADTVAGTSGVRRSGMQWLLMRGCVGERQIGFMKNSFLISIPPTTCM 60

Query: 61  PPPLVDGVHKSALALSLSPSLTICLSGPPSPCGTPSFSCRKYW 104
           PPPLVDGVHKSALALSLSPSLTICLSGPPSPCGTPSFSCRKYW
Sbjct: 61  PPPLVDGVHKSALALSLSPSLTICLSGPPSPCGTPSFSCRKYW 99

[Close]
BLAST of CsaV3_3G004780 vs. ExPASy TrEMBL
Match: A0A5A7UQF3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold943G00390 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.2e-09
Identity = 39/57 (68.42%), Postives = 43/57 (75.44%), Query Frame = 0 

Query: 1  MRIWQIRVQRTAAAADTVAGTSGVRRSGMQWLLMRGCVGERQIGFMKNSF--LISIP 56
          MRI QIRVQ  AAAADTV+GTSGV   GMQWLL+ GCV E +IGFM+  F  L SIP
Sbjct: 1  MRIRQIRVQHIAAAADTVSGTSGVFPGGMQWLLVGGCVAEGEIGFMEKWFSPLGSIP 57

The following BLAST results are available for this feature:
BLAST of CsaV3_3G004780 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8650125.16.5e-53100.00hypothetical protein Csa_010474 [Cucumis sativus][more]
KAA0055845.11.3e-0868.42hypothetical protein E6C27_scaffold104G00210 [Cucumis melo var. makuwa] >TYK2406... [more]
BLAST of CsaV3_3G004780 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G004780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4Z62.0e-4793.20Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G073855 PE=4 SV=1[more]
A0A5A7UQF36.2e-0968.42Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CsaV3_3G004780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G004780.1CsaV3_3G004780.1mRNA