CsaV3_3G004640 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G004640
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3: 3910545 .. 3911076 (-)
RNA-Seq ExpressionCsaV3_3G004640
SyntenyCsaV3_3G004640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACTAATATTGTGTGCCCTTTTACAAAAATATGACTTCCAAAATTGTTTTTCTTGTGCTTCTTGGTGCCCTCGTCTGCTCCACTTTTGAGGCTCGCAAGCTGAGTATTGCCTCTTCCACCCAAGATGAGAAGTTTGAGGACCATGGCTTGGTTGATGGAGAGTTAAGTGGTCGAGCAAGAGGGTTAGCTGGACAGTTCATTGGAATAGGTTTTAATTCAAGCGTTTCTCTAGGTGTAGGTGTAGGAAGCCCACCTGTGTTATATGTAGGAACCCCACCGATCAATGTAGGCATTGGGGTAAGCGGTGGTTCTGAGAATGGACCTAGTGGTGGTGGTAAGTAGAGAGGTGGTTCGATGGTGCTGTGTTCTGTGCAAAAGGTGCCTTCCCCCTTGAAGAATAATGTTTTTACTACCAAGGAGAAATTAAGTTTCTTTTAAATCCTATCTATATGCTATATAATTTTAGGTATTTGTTTTTGTATGTGTTATGTGTGACTTGTGCTTGTTTCTGTATTTGTGTTTATGTGTGC

mRNA sequence

ATGACTTCCAAAATTGTTTTTCTTGTGCTTCTTGGTGCCCTCGTCTGCTCCACTTTTGAGGCTCGCAAGCTGAGTATTGCCTCTTCCACCCAAGATGAGAAGTTTGAGGACCATGGCTTGGTTGATGGAGAGTTAAGTGGTCGAGCAAGAGGGTTAGCTGGACAGTTCATTGGAATAGGTTTTAATTCAAGCGTTTCTCTAGGTGTAGGTGTAGGAAGCCCACCTGTGTTATATGTAGGAACCCCACCGATCAATGTAGGCATTGGGGTAAGCGGTGGTTCTGAGAATGGACCTAGTGGTGGTGGTAAGTAG

Coding sequence (CDS)

ATGACTTCCAAAATTGTTTTTCTTGTGCTTCTTGGTGCCCTCGTCTGCTCCACTTTTGAGGCTCGCAAGCTGAGTATTGCCTCTTCCACCCAAGATGAGAAGTTTGAGGACCATGGCTTGGTTGATGGAGAGTTAAGTGGTCGAGCAAGAGGGTTAGCTGGACAGTTCATTGGAATAGGTTTTAATTCAAGCGTTTCTCTAGGTGTAGGTGTAGGAAGCCCACCTGTGTTATATGTAGGAACCCCACCGATCAATGTAGGCATTGGGGTAAGCGGTGGTTCTGAGAATGGACCTAGTGGTGGTGGTAAGTAG

Protein sequence

MTSKIVFLVLLGALVCSTFEARKLSIASSTQDEKFEDHGLVDGELSGRARGLAGQFIGIGFNSSVSLGVGVGSPPVLYVGTPPINVGIGVSGGSENGPSGGGK*
Homology
[Close]
BLAST of CsaV3_3G004640 vs. NCBI nr
Match: KGN56077.1 (hypothetical protein Csa_011309 [Cucumis sativus])

HSP 1 Score: 196.1 bits (497), Expect = 1.6e-46
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MTSKIVFLVLLGALVCSTFEARKLSIASSTQDEKFEDHGLVDGELSGRARGLAGQFIGIG 60
           MTSKIVFLVLLGALVCSTFEARKLSIASSTQDEKFEDHGLVDGELSGRARGLAGQFIGIG
Sbjct: 1   MTSKIVFLVLLGALVCSTFEARKLSIASSTQDEKFEDHGLVDGELSGRARGLAGQFIGIG 60

Query: 61  FNSSVSLGVGVGSPPVLYVGTPPINVGIGVSGGSENGPSGGGK 104
           FNSSVSLGVGVGSPPVLYVGTPPINVGIGVSGGSENGPSGGGK
Sbjct: 61  FNSSVSLGVGVGSPPVLYVGTPPINVGIGVSGGSENGPSGGGK 103

[Close]
BLAST of CsaV3_3G004640 vs. NCBI nr
Match: KAA0065832.1 (hypothetical protein E6C27_scaffold37G001400 [Cucumis melo var. makuwa] >TYK24041.1 hypothetical protein E5676_scaffold943G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 2.7e-22
Identity = 68/107 (63.55%), Postives = 78/107 (72.90%), Query Frame = 0 

Query: 1   MTSKIVFLVLLGALVCSTFEARKLSIASSTQDEKFEDHGLVDGELSGRARGLAGQFIGIG 60
           MTSKIVFLVLLGALVCSTFEARKL++ASS QDEKFEDHGLVDGELSG  R    +     
Sbjct: 1   MTSKIVFLVLLGALVCSTFEARKLNVASSGQDEKFEDHGLVDGELSGGVRESVRK----- 60

Query: 61  FNSSVSLGVGVG----SPPVLYVGTPPINVGIGVSGGSENGPSGGGK 104
            +++V +G GV       P+LY+GTP  NVGIG+  GS   PSGGGK
Sbjct: 61  LDANVGVGTGVDLDLLGSPLLYLGTPGTNVGIGLGNGSGGVPSGGGK 102

[Close]
BLAST of CsaV3_3G004640 vs. ExPASy TrEMBL
Match: A0A0A0L669 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G065250 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 7.5e-47
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MTSKIVFLVLLGALVCSTFEARKLSIASSTQDEKFEDHGLVDGELSGRARGLAGQFIGIG 60
           MTSKIVFLVLLGALVCSTFEARKLSIASSTQDEKFEDHGLVDGELSGRARGLAGQFIGIG
Sbjct: 1   MTSKIVFLVLLGALVCSTFEARKLSIASSTQDEKFEDHGLVDGELSGRARGLAGQFIGIG 60

Query: 61  FNSSVSLGVGVGSPPVLYVGTPPINVGIGVSGGSENGPSGGGK 104
           FNSSVSLGVGVGSPPVLYVGTPPINVGIGVSGGSENGPSGGGK
Sbjct: 61  FNSSVSLGVGVGSPPVLYVGTPPINVGIGVSGGSENGPSGGGK 103

[Close]
BLAST of CsaV3_3G004640 vs. ExPASy TrEMBL
Match: A0A5A7VBZ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold943G00010 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.3e-22
Identity = 68/107 (63.55%), Postives = 78/107 (72.90%), Query Frame = 0 

Query: 1   MTSKIVFLVLLGALVCSTFEARKLSIASSTQDEKFEDHGLVDGELSGRARGLAGQFIGIG 60
           MTSKIVFLVLLGALVCSTFEARKL++ASS QDEKFEDHGLVDGELSG  R    +     
Sbjct: 1   MTSKIVFLVLLGALVCSTFEARKLNVASSGQDEKFEDHGLVDGELSGGVRESVRK----- 60

Query: 61  FNSSVSLGVGVG----SPPVLYVGTPPINVGIGVSGGSENGPSGGGK 104
            +++V +G GV       P+LY+GTP  NVGIG+  GS   PSGGGK
Sbjct: 61  LDANVGVGTGVDLDLLGSPLLYLGTPGTNVGIGLGNGSGGVPSGGGK 102

The following BLAST results are available for this feature:
BLAST of CsaV3_3G004640 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56077.11.6e-46100.00hypothetical protein Csa_011309 [Cucumis sativus][more]
KAA0065832.12.7e-2263.55hypothetical protein E6C27_scaffold37G001400 [Cucumis melo var. makuwa] >TYK2404... [more]
BLAST of CsaV3_3G004640 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G004640 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6697.5e-47100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G065250 PE=4 SV=1[more]
A0A5A7VBZ11.3e-2263.55Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CsaV3_3G004640 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G004640.1CsaV3_3G004640.1mRNA