CsaV3_3G002930 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G002930
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Location	chr3: 2411196 .. 2411914 (+)
RNA-Seq Expression	CsaV3_3G002930
Synteny	CsaV3_3G002930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCCTGCTTCATAAACAAAAACCATTTCACTTTTCTTCTCTTCACAAAAAGAAAAAATGTCTTCGTCCAACAAATCCTTTTCACTTGCTCTCTTCTTCTGTCTCAACCTAATTCTCTTCTCTTCTCTTGCTATTGCTCAACCAATTGTACCAGCATCGAGCCCGACCCCCAATTGCTCCCGCAATGTACGTGTATGTGCAAGTGTACTTAATATTGTTAATCTAACCATTGGCCAAAACCTAGGTCCATGTTGTCAATTGATTCAAGGGCTAGCAGCTGCTGAGGTTGATATTTGTATACAGACTGCCATAAGTAATGCACTTAGAGCAAGTCTTTCAGGCCTACCCCCTGTGAACCTATCCGTTGAGTCGTTCGTGCTCCGTATATTGCTCAGCAGATGCAACAGAGCTACCTGATTTAAGTTTATCTTCTAATTAGTCTATACAACTTCAAGATCAGAAAATAAAATAAAATAAGAAGTTGTAATGCTTTATTTTATGTATGCACTTATGTTCTTTTAGTTCAATAAGTTTGGAGCGTAAGTATGAAGGTTAGGATTGAAACACCATCAACCTTGAAGTTGAAGGTACATAGATATGGATATCTTAACAATTAAGACTATACTCTCTTCTTCTTCGTCTTTTTTTTTTCTTCATGTAATTTGGGCAAGCTAATATTATGAAATAAAACTAATGTTGTTGCACCTGTTTATTTATAT

mRNA sequence

ATGTCTTCGTCCAACAAATCCTTTTCACTTGCTCTCTTCTTCTGTCTCAACCTAATTCTCTTCTCTTCTCTTGCTATTGCTCAACCAATTGTACCAGCATCGAGCCCGACCCCCAATTGCTCCCGCAATGTACGTGTATGTGCAAGTGTACTTAATATTGTTAATCTAACCATTGGCCAAAACCTAGGTCCATGTTGTCAATTGATTCAAGGGCTAGCAGCTGCTGAGGTTGATATTTGTATACAGACTGCCATAAGTAATGCACTTAGAGCAAGTCTTTCAGGCCTACCCCCTGTGAACCTATCCGTTGAGTCGTTCGTGCTCCGTATATTGCTCAGCAGATGCAACAGAGCTACCTGA

Coding sequence (CDS)

ATGTCTTCGTCCAACAAATCCTTTTCACTTGCTCTCTTCTTCTGTCTCAACCTAATTCTCTTCTCTTCTCTTGCTATTGCTCAACCAATTGTACCAGCATCGAGCCCGACCCCCAATTGCTCCCGCAATGTACGTGTATGTGCAAGTGTACTTAATATTGTTAATCTAACCATTGGCCAAAACCTAGGTCCATGTTGTCAATTGATTCAAGGGCTAGCAGCTGCTGAGGTTGATATTTGTATACAGACTGCCATAAGTAATGCACTTAGAGCAAGTCTTTCAGGCCTACCCCCTGTGAACCTATCCGTTGAGTCGTTCGTGCTCCGTATATTGCTCAGCAGATGCAACAGAGCTACCTGA

Protein sequence

MSSSNKSFSLALFFCLNLILFSSLAIAQPIVPASSPTPNCSRNVRVCASVLNIVNLTIGQNLGPCCQLIQGLAAAEVDICIQTAISNALRASLSGLPPVNLSVESFVLRILLSRCNRAT*

Homology

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BLAST of CsaV3_3G002930 vs. NCBI nr
Match: XP_011652719.2 (putative lipid-binding protein AIR1B [Cucumis sativus] >KGN55893.2 hypothetical protein Csa_010099 [Cucumis sativus])

HSP 1 Score: 226.5 bits (576), Expect = 1.2e-55
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MSSSNKSFSLALFFCLNLILFSSLAIAQPIVPASSPTPNCSRNVRVCASVLNIVNLTIGQ 60
           MSSSNKSFSLALFFCLNLILFSSLAIAQPIVPASSPTPNCSRNVRVCASVLNIVNLTIGQ
Sbjct: 1   MSSSNKSFSLALFFCLNLILFSSLAIAQPIVPASSPTPNCSRNVRVCASVLNIVNLTIGQ 60

Query: 61  NLGPCCQLIQGLAAAEVDICIQTAISNALRASLSGLPPVNLSVESFVLRILLSRCNRAT 120
           NLGPCCQLIQGLAAAEVDICIQTAISNALRASLSGLPPVNLSVESFVLRILLSRCNRAT
Sbjct: 61  NLGPCCQLIQGLAAAEVDICIQTAISNALRASLSGLPPVNLSVESFVLRILLSRCNRAT 119

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BLAST of CsaV3_3G002930 vs. NCBI nr
Match: KGN55884.1 (hypothetical protein Csa_009554 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 5.2e-22
Identity = 68/118 (57.63%), Postives = 83/118 (70.34%), Query Frame = 0


Query: 1   MSSSNKSFSLALFFCLNLILFSSLAIAQPIVPASSPTPNCSRNVRVCASVLNIVNLTIG- 60
           MSSS+KSFSLALFFCLNLILFSSLAIAQPIVP SSPT NCS NV  CASV+  + ++ G 
Sbjct: 1   MSSSDKSFSLALFFCLNLILFSSLAIAQPIVPESSPTTNCSGNVSACASVIGFITVSAGS 60

Query: 61  -QNLGPCCQLIQGLAAAEVDICIQTAISNALRASLSGLPPVNLSVESFVLRILLSRCN 117
            + + PCC LIQGL A    IC+  A+  A+  +      VN SVE+ +L IL++ CN
Sbjct: 61  QEPVRPCCDLIQGLVATNAKICLNLALDLAVDINPIS---VNTSVEA-MLDILVNTCN 114

[Close]

BLAST of CsaV3_3G002930 vs. NCBI nr
Match: TYK12005.1 (14 kDa proline-rich protein DC2.15-like [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 2.9e-20
Identity = 70/123 (56.91%), Postives = 84/123 (68.29%), Query Frame = 0


Query: 1   MSSSNKSFSLALFFCLNLILFSSLAIAQPIVPASSPT---PNCS-RNVRVCASVLNIVNL 60
           MSS NK FSLALF+CL   LFSSLAIAQPIVPA SPT    NCS RNV +CA+VLN VN+
Sbjct: 1   MSSCNKPFSLALFYCL-CFLFSSLAIAQPIVPAPSPTTGGANCSLRNVVLCATVLNYVNV 60

Query: 61  TIGQN---LGPCCQLIQGLAAAEVDICIQTAISNALRASLSGLPPVNLSVESFVLRILLS 117
            IG N   + PCC +I+GL A E  +CI +A+   +R +L   P +NLS E  +L IL  
Sbjct: 61  NIGSNNQAIRPCCDMIRGLVAVEAGMCISSAVD--VRVNLGLRPLINLSTE-VILNILEG 119

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BLAST of CsaV3_3G002930 vs. NCBI nr
Match: KAG6577623.1 (putative lipid-binding protein AIR1B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.7 bits (195), Expect = 1.9e-11
Identity = 51/120 (42.50%), Postives = 68/120 (56.67%), Query Frame = 0


Query: 2   SSSNKSFSLALFFCLNLILFSSLAIAQPIVPASSPTP-NCSRN---VRVCASVLNIVNLT 61
           SS   S  LALF CLNL LF SL  AQP+VP  SP+P +C R    VRVCA VL  +++ 
Sbjct: 3   SSKKPSSLLALFLCLNL-LFFSLVTAQPMVPPPSPSPTSCPRGLVPVRVCAGVLRFLSIG 62

Query: 62  IGQNLGPCCQLIQGLAAAEVDICIQTAISNALRASLSGLPPVNLSVESFVLRILLSRCNR 118
           +G N+GPCC +IQGL A +   C+            + L  VN    +  + I+L+ CN+
Sbjct: 63  LGSNVGPCCSMIQGLTAVQAAACV-----------CASLRLVNTLTANVTVPIVLNLCNQ 110

[Close]

BLAST of CsaV3_3G002930 vs. NCBI nr
Match: TYK12008.1 (14 kDa proline-rich protein DC2.15-like [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 1.0e-09
Identity = 52/134 (38.81%), Postives = 76/134 (56.72%), Query Frame = 0


Query: 1   MSSSNKSFSLALFFCLNLILFSSLAIAQPIVPAS-----SPTP------NCSR---NVRV 60
           M SSNK+  LALFF LNL+ FS +   QP+ P +     SPTP       C R   N+  
Sbjct: 1   MYSSNKTSPLALFFFLNLLFFSLVTSHQPVQPPNPVQPPSPTPPTNNGATCPRNTLNIAA 60

Query: 61  CASVLNIVNL---TIGQNLGPCCQLIQGLAAAEVDICIQTAISNALRASLSGLPPVNLSV 118
           CA+VLN+V+L      Q+  PCC LIQGLA  E  +C+ TA+   + + +S + P+NL+ 
Sbjct: 61  CANVLNLVSLLNNQPNQSYPPCCSLIQGLADLEARVCLCTALRLKVGSLVSLIVPINLN- 120

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BLAST of CsaV3_3G002930 vs. ExPASy Swiss-Prot
Match: Q9ZSP6 (Putative lipid-binding protein AIR1B OS=Arabidopsis thaliana OX=3702 GN=AIR1B PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-10
Identity = 45/110 (40.91%), Postives = 63/110 (57.27%), Query Frame = 0


Query: 9   SLALFFCLNLILFSSLAIAQPIVPASSPTPNCSRNVRVCASVLNIVNLTIGQ-NLGPCCQ 68
           SLALF  LNL+ F+           S+ T  C   +  CA+VLN+V+LT+G   + PCC 
Sbjct: 6   SLALFVSLNLLFFTC---------TSATTGTCPIQISTCANVLNLVDLTLGNPPVKPCCS 65

Query: 69  LIQGLAAAEVDICIQTAISNALRASLSGLPPVNLSVESFVLRILLSRCNR 118
           LIQGLA  E   C+ T    AL+AS+ G+  +NL +    L +LL+ C+R
Sbjct: 66  LIQGLADLEAAACLCT----ALKASILGIVNINLPIN---LSVLLNVCSR 99

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BLAST of CsaV3_3G002930 vs. ExPASy Swiss-Prot
Match: Q9S7I2 (Putative lipid-binding protein AIR1 OS=Arabidopsis thaliana OX=3702 GN=AIR1 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-09
Identity = 43/112 (38.39%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 10  LALFFCLNLILFSSLAIAQPIVPASSPTPNCSRN---VRVCASVLNIVNLTIGQ-NLGPC 69
           LALF  LNL+ F+           S+ T  C +N   +  C +VLN+V+LT+G   + PC
Sbjct: 7   LALFVSLNLLFFTY---------TSATTGTCPKNSIEIGTCVTVLNLVDLTLGNPPVKPC 66

Query: 70  CQLIQGLAAAEVDICIQTAISNALRASLSGLPPVNLSVESFVLRILLSRCNR 118
           C LIQGLA  E  +C+ TA+    +AS+ G+  +NL +    L +LL+ C+R
Sbjct: 67  CSLIQGLADLEAAVCLCTAV----KASILGIVNINLPIN---LSVLLNVCSR 102

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BLAST of CsaV3_3G002930 vs. ExPASy Swiss-Prot
Match: P14009 (14 kDa proline-rich protein DC2.15 OS=Daucus carota OX=4039 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.2e-06
Identity = 43/134 (32.09%), Postives = 63/134 (47.01%), Query Frame = 0


Query: 4   SNKSFSLALFFCLNLILFSSLAIAQ----PIVPASSPTP-----------NCSRN---VR 63
           S  S S+ALFF LN++ F+ ++  +    P  P   PTP            C R+   + 
Sbjct: 3   SKNSASVALFFTLNILFFALVSSTEKCPDPYKPKPKPTPKPTPTPYPSAGKCPRDALKLG 62

Query: 64  VCASVLNIV-NLTIGQ-NLGPCCQLIQGLAAAEVDICIQTAISNALRASLSGLPPVNLSV 118
           VCA VLN+V N+ IG     PCC L++GL   E  +C+ TAI   +      LP      
Sbjct: 63  VCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIKANILGKNLNLP------ 122

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BLAST of CsaV3_3G002930 vs. ExPASy Swiss-Prot
Match: Q39176 (Lipid transfer protein EARLI 1 OS=Arabidopsis thaliana OX=3702 GN=EARLI1 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 9.3e-06
Identity = 52/166 (31.33%), Postives = 77/166 (46.39%), Query Frame = 0


Query: 3   SSNKSFSLALFFCLNLILFS-----------------------------------SLAIA 62
           +S  S S+ALFF LN+I F+                                   S ++ 
Sbjct: 2   ASKNSASIALFFALNIIFFTLTAATDCGCNPSPKHKPVPSPKPKPVPSPKPKPVPSPSVP 61

Query: 63  QPIVPASSPTP-----------NC---SRNVRVCASVL-NIVNLTIGQ-NLGPCCQLIQG 118
            P VP+ +P P           NC   +  + VCA+VL +++N+ +GQ +  PCC LIQG
Sbjct: 62  SPSVPSPNPRPVTPPRTPGSSGNCPIDALRLGVCANVLSSLLNIQLGQPSAQPCCSLIQG 121

[Close]

BLAST of CsaV3_3G002930 vs. ExPASy Swiss-Prot
Match: Q9SU34 (pEARLI1-like lipid transfer protein 2 OS=Arabidopsis thaliana OX=3702 GN=At4g12490 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 9.3e-06
Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = 0


Query: 25  AIAQPIVPASSPTP-----------NC---SRNVRVCASVLN-IVNLTIGQ-NLGPCCQL 84
           ++  P VP+ +PTP           NC   +  + VCA+VL+ ++N+ +GQ +  PCC L
Sbjct: 73  SVPSPSVPSPNPTPVIPPRTPGSSGNCPIDALRLGVCANVLSGLLNVQLGQPSPQPCCSL 132

Query: 85  IQGLAAAEVDICIQTAISNALRASLSGLPPVNLSVESFVLRILLSRCNR 118
           IQGL   +  +C+ T    ALRA++ G   +NL+V    L +LL+ CNR
Sbjct: 133 IQGLVDLDAAVCLCT----ALRANVLG---INLNV-PISLSVLLNVCNR 173

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BLAST of CsaV3_3G002930 vs. ExPASy TrEMBL
Match: A0A0A0L1L8 (Hydrophob_seed domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G027190 PE=3 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.3e-55
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   MSSSNKSFSLALFFCLNLILFSSLAIAQPIVPASSPTPNCSRNVRVCASVLNIVNLTIGQ 60
           MSSSNKSFSLALFFCLNLILFSSLAIAQPIVPASSPTPNCSRNVRVCASVLNIVNLTIGQ
Sbjct: 1   MSSSNKSFSLALFFCLNLILFSSLAIAQPIVPASSPTPNCSRNVRVCASVLNIVNLTIGQ 60

Query: 61  NLGPCCQLIQGLAAAEVDICIQTAISNALRASLSGLPPVNLSVESFVLRILLSRCNRAT 120
           NLGPCCQLIQGLAAAEVDICIQTAISN LRASLSGLPPVNLSVESFVLRILLSRCNRAT
Sbjct: 61  NLGPCCQLIQGLAAAEVDICIQTAISNELRASLSGLPPVNLSVESFVLRILLSRCNRAT 119

[Close]

BLAST of CsaV3_3G002930 vs. ExPASy TrEMBL
Match: A0A0A0L4B3 (Hydrophob_seed domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G026690 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.5e-22
Identity = 68/118 (57.63%), Postives = 83/118 (70.34%), Query Frame = 0


Query: 1   MSSSNKSFSLALFFCLNLILFSSLAIAQPIVPASSPTPNCSRNVRVCASVLNIVNLTIG- 60
           MSSS+KSFSLALFFCLNLILFSSLAIAQPIVP SSPT NCS NV  CASV+  + ++ G 
Sbjct: 1   MSSSDKSFSLALFFCLNLILFSSLAIAQPIVPESSPTTNCSGNVSACASVIGFITVSAGS 60

Query: 61  -QNLGPCCQLIQGLAAAEVDICIQTAISNALRASLSGLPPVNLSVESFVLRILLSRCN 117
            + + PCC LIQGL A    IC+  A+  A+  +      VN SVE+ +L IL++ CN
Sbjct: 61  QEPVRPCCDLIQGLVATNAKICLNLALDLAVDINPIS---VNTSVEA-MLDILVNTCN 114

[Close]

BLAST of CsaV3_3G002930 vs. ExPASy TrEMBL
Match: A0A5D3CKE8 (14 kDa proline-rich protein DC2.15-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00110 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.4e-20
Identity = 70/123 (56.91%), Postives = 84/123 (68.29%), Query Frame = 0


Query: 1   MSSSNKSFSLALFFCLNLILFSSLAIAQPIVPASSPT---PNCS-RNVRVCASVLNIVNL 60
           MSS NK FSLALF+CL   LFSSLAIAQPIVPA SPT    NCS RNV +CA+VLN VN+
Sbjct: 1   MSSCNKPFSLALFYCL-CFLFSSLAIAQPIVPAPSPTTGGANCSLRNVVLCATVLNYVNV 60

Query: 61  TIGQN---LGPCCQLIQGLAAAEVDICIQTAISNALRASLSGLPPVNLSVESFVLRILLS 117
            IG N   + PCC +I+GL A E  +CI +A+   +R +L   P +NLS E  +L IL  
Sbjct: 61  NIGSNNQAIRPCCDMIRGLVAVEAGMCISSAVD--VRVNLGLRPLINLSTE-VILNILEG 119

[Close]

BLAST of CsaV3_3G002930 vs. ExPASy TrEMBL
Match: A0A5D3CLJ3 (14 kDa proline-rich protein DC2.15-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00160 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 5.0e-10
Identity = 52/134 (38.81%), Postives = 76/134 (56.72%), Query Frame = 0


Query: 1   MSSSNKSFSLALFFCLNLILFSSLAIAQPIVPAS-----SPTP------NCSR---NVRV 60
           M SSNK+  LALFF LNL+ FS +   QP+ P +     SPTP       C R   N+  
Sbjct: 1   MYSSNKTSPLALFFFLNLLFFSLVTSHQPVQPPNPVQPPSPTPPTNNGATCPRNTLNIAA 60

Query: 61  CASVLNIVNL---TIGQNLGPCCQLIQGLAAAEVDICIQTAISNALRASLSGLPPVNLSV 118
           CA+VLN+V+L      Q+  PCC LIQGLA  E  +C+ TA+   + + +S + P+NL+ 
Sbjct: 61  CANVLNLVSLLNNQPNQSYPPCCSLIQGLADLEARVCLCTALRLKVGSLVSLIVPINLN- 120

[Close]

BLAST of CsaV3_3G002930 vs. ExPASy TrEMBL
Match: A0A6P6A5B7 (14 kDa proline-rich protein DC2.15-like isoform X1 OS=Durio zibethinus OX=66656 GN=LOC111306290 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.6e-08
Identity = 55/131 (41.98%), Postives = 75/131 (57.25%), Query Frame = 0


Query: 3   SSNKSFSLALFFCLNLILFSSLAIAQPIVPASSPTPN------------CSRN---VRVC 62
           +S KS SLALFF LN ILF SL  A+   P+  P PN            C R+   + VC
Sbjct: 2   ASKKSASLALFFALN-ILFFSLVSARASCPSPKPKPNPTPSPSPSGGGKCPRDALKLGVC 61

Query: 63  ASVLNIVNLTIGQ-NLGPCCQLIQGLAAAEVDICIQTAISNALRASLSGLPPVNLSVESF 118
           A VL +VN+TIG   + PCC LIQGLA  E  +C+ TAI    +A++ G   +NL++   
Sbjct: 62  ADVLGLVNVTIGSPPVQPCCSLIQGLADLEAAVCLCTAI----KANILG---INLNI-PV 121

[Close]

BLAST of CsaV3_3G002930 vs. TAIR 10
Match: AT4G12545.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-11
Identity = 45/110 (40.91%), Postives = 63/110 (57.27%), Query Frame = 0


Query: 9   SLALFFCLNLILFSSLAIAQPIVPASSPTPNCSRNVRVCASVLNIVNLTIGQ-NLGPCCQ 68
           SLALF  LNL+ F+           S+ T  C   +  CA+VLN+V+LT+G   + PCC 
Sbjct: 6   SLALFVSLNLLFFTC---------TSATTGTCPIQISTCANVLNLVDLTLGNPPVKPCCS 65

Query: 69  LIQGLAAAEVDICIQTAISNALRASLSGLPPVNLSVESFVLRILLSRCNR 118
           LIQGLA  E   C+ T    AL+AS+ G+  +NL +    L +LL+ C+R
Sbjct: 66  LIQGLADLEAAACLCT----ALKASILGIVNINLPIN---LSVLLNVCSR 99

[Close]

BLAST of CsaV3_3G002930 vs. TAIR 10
Match: AT4G12550.1 (Auxin-Induced in Root cultures 1 )

HSP 1 Score: 62.8 bits (151), Expect = 2.2e-10
Identity = 43/112 (38.39%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 10  LALFFCLNLILFSSLAIAQPIVPASSPTPNCSRN---VRVCASVLNIVNLTIGQ-NLGPC 69
           LALF  LNL+ F+           S+ T  C +N   +  C +VLN+V+LT+G   + PC
Sbjct: 7   LALFVSLNLLFFTY---------TSATTGTCPKNSIEIGTCVTVLNLVDLTLGNPPVKPC 66

Query: 70  CQLIQGLAAAEVDICIQTAISNALRASLSGLPPVNLSVESFVLRILLSRCNR 118
           C LIQGLA  E  +C+ TA+    +AS+ G+  +NL +    L +LL+ C+R
Sbjct: 67  CSLIQGLADLEAAVCLCTAV----KASILGIVNINLPIN---LSVLLNVCSR 102

[Close]

BLAST of CsaV3_3G002930 vs. TAIR 10
Match: AT1G12090.1 (extensin-like protein )

HSP 1 Score: 52.0 bits (123), Expect = 3.9e-07
Identity = 44/135 (32.59%), Postives = 71/135 (52.59%), Query Frame = 0


Query: 7   SFSLALFFCLNLILFSSLAIAQPIVP----------------------ASSPTPNCSRNV 66
           S S+ALF  LNL+ F++++      P                       SS  P  +  +
Sbjct: 3   SSSIALFLALNLLFFTTISACGSCTPCGGGCPSPKPKPTPKPTPSPSSGSSKCPKDTLKL 62

Query: 67  RVCASVLN-IVNLTIGQ-NLGPCCQLIQGLAAAEVDICIQTAISNALRASLSGLPPVNLS 118
            VCA+VLN +++LT+G+  + PCC LIQGLA  E  +C+ T    AL+A++ G+  +NL 
Sbjct: 63  GVCANVLNGLLDLTLGKPPVEPCCSLIQGLADVEAAVCLCT----ALKANILGI-NLNLP 122

[Close]

BLAST of CsaV3_3G002930 vs. TAIR 10
Match: AT4G12480.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 51.2 bits (121), Expect = 6.6e-07
Identity = 52/166 (31.33%), Postives = 77/166 (46.39%), Query Frame = 0


Query: 3   SSNKSFSLALFFCLNLILFS-----------------------------------SLAIA 62
           +S  S S+ALFF LN+I F+                                   S ++ 
Sbjct: 2   ASKNSASIALFFALNIIFFTLTAATDCGCNPSPKHKPVPSPKPKPVPSPKPKPVPSPSVP 61

Query: 63  QPIVPASSPTP-----------NC---SRNVRVCASVL-NIVNLTIGQ-NLGPCCQLIQG 118
            P VP+ +P P           NC   +  + VCA+VL +++N+ +GQ +  PCC LIQG
Sbjct: 62  SPSVPSPNPRPVTPPRTPGSSGNCPIDALRLGVCANVLSSLLNIQLGQPSAQPCCSLIQG 121

[Close]

BLAST of CsaV3_3G002930 vs. TAIR 10
Match: AT4G12490.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 51.2 bits (121), Expect = 6.6e-07
Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = 0


Query: 25  AIAQPIVPASSPTP-----------NC---SRNVRVCASVLN-IVNLTIGQ-NLGPCCQL 84
           ++  P VP+ +PTP           NC   +  + VCA+VL+ ++N+ +GQ +  PCC L
Sbjct: 73  SVPSPSVPSPNPTPVIPPRTPGSSGNCPIDALRLGVCANVLSGLLNVQLGQPSPQPCCSL 132

Query: 85  IQGLAAAEVDICIQTAISNALRASLSGLPPVNLSVESFVLRILLSRCNR 118
           IQGL   +  +C+ T    ALRA++ G   +NL+V    L +LL+ CNR
Sbjct: 133 IQGLVDLDAAVCLCT----ALRANVLG---INLNV-PISLSVLLNVCNR 173

The following BLAST results are available for this feature:

BLAST of CsaV3_3G002930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652719.2	1.2e-55	100.00	putative lipid-binding protein AIR1B [Cucumis sativus] >KGN55893.2 hypothetical ...	[more]
KGN55884.1	5.2e-22	57.63	hypothetical protein Csa_009554 [Cucumis sativus]	[more]
TYK12005.1	2.9e-20	56.91	14 kDa proline-rich protein DC2.15-like [Cucumis melo var. makuwa]	[more]
KAG6577623.1	1.9e-11	42.50	putative lipid-binding protein AIR1B, partial [Cucurbita argyrosperma subsp. sor...	[more]
TYK12008.1	1.0e-09	38.81	14 kDa proline-rich protein DC2.15-like [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_3G002930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZSP6	2.1e-10	40.91	Putative lipid-binding protein AIR1B OS=Arabidopsis thaliana OX=3702 GN=AIR1B PE...	[more]
Q9S7I2	3.1e-09	38.39	Putative lipid-binding protein AIR1 OS=Arabidopsis thaliana OX=3702 GN=AIR1 PE=2...	[more]
P14009	7.2e-06	32.09	14 kDa proline-rich protein DC2.15 OS=Daucus carota OX=4039 PE=2 SV=1	[more]
Q39176	9.3e-06	31.33	Lipid transfer protein EARLI 1 OS=Arabidopsis thaliana OX=3702 GN=EARLI1 PE=1 SV...	[more]
Q9SU34	9.3e-06	36.70	pEARLI1-like lipid transfer protein 2 OS=Arabidopsis thaliana OX=3702 GN=At4g124...	[more]

BLAST of CsaV3_3G002930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1L8	2.3e-55	99.16	Hydrophob_seed domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G027...	[more]
A0A0A0L4B3	2.5e-22	57.63	Hydrophob_seed domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G026...	[more]
A0A5D3CKE8	1.4e-20	56.91	14 kDa proline-rich protein DC2.15-like OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3CLJ3	5.0e-10	38.81	14 kDa proline-rich protein DC2.15-like OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A6P6A5B7	1.6e-08	41.98	14 kDa proline-rich protein DC2.15-like isoform X1 OS=Durio zibethinus OX=66656 ...	[more]

BLAST of CsaV3_3G002930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G12545.1	1.5e-11	40.91	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT4G12550.1	2.2e-10	38.39	Auxin-Induced in Root cultures 1	[more]
AT1G12090.1	3.9e-07	32.59	extensin-like protein	[more]
AT4G12480.1	6.6e-07	31.33	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT4G12490.1	6.6e-07	36.70	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027923	Hydrophobic seed protein domain	PFAM	PF14547	Hydrophob_seed	coord: 41..118 e-value: 2.7E-10 score: 40.3
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	GENE3D	1.10.110.10		coord: 33..119 e-value: 3.8E-10 score: 41.4
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 43..116
None	No IPR available	PANTHER	PTHR31731	FAMILY NOT NAMED	coord: 6..118
None	No IPR available	PANTHER	PTHR31731:SF82	HYPRP2	coord: 6..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G002930.1	CsaV3_3G002930.1	mRNA