CsaV3_3G002290 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G002290
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	light-harvesting complex-like protein 3 isotype 1, chloroplastic
Location	chr3: 1840647 .. 1843285 (-)
RNA-Seq Expression	CsaV3_3G002290
Synteny	CsaV3_3G002290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATTTATATTTTATTAACTTTCTCACGAATAGTTAACGGTTCTTTAAACTTAGTAACTTTCTTATTTCACTCAAAAGTTGACAAAGTAAAGGTTGTTTTTGAGGTATAATAATAAAAAAAAGATATATGGTTAGGGACAAAATGGTATTTTAAGAGGTCTATATTATCATTATATTATAGTAGAAAAATGACGAGTAAATGTAGAAAGTGCAATAAAATGACAAGTAAATGTAGAAAGTGCAAAGCTTCCCCATCCATCATAATTACAAGGCTGAGGATAGAGCTTAGAGCAGAAGCTCTCTCCCTCCCTTCTCCATAACAACAATGTCGTCCATGGCTTTGTTTTCTCCTTCATCCCATCTTTCTACTTTCTCTCCTTCACACCACACAACCCATTTCTCCTTCAGACCCTTTTCTTCTCTCAGAACCAGAAACCCTTCTTCTTCTTCTTCCTCTCTCTTCACTATCAGGGCCACAGCTGACAATGGTGCCGGAATTTCAGGTGGTTCAGCCACTGTTTCTGTAGAAACCCCCGTCGAGCAGAAGGATCCGGAGCCGGCCAAGCTTGCACCCGAAGAGCAGGAGAGCCTCGCCGGAACCAATGGGTCGGTGGCGGCTGCTGAAGAAGTTGTCGAGGTGGTTAGCAAATTTGAAGACCCTAAATGGGTTAATGGGACTTGGGATTTGAATCAGTTCCAGAAAAATGGAAGCACTGATTGGGATGCTGTTATTGATGCTGGTAACCTTCGTTATGAGAAATGAAACATTAAACTATTTTGTTCTTTTAGGGGGGGGAACCCTAAATTATCTGTTTATTTTGCTTCTAATTGCATAGCTAAATCTAGGTGTATAAACGGGGTACATTGGAAATTGACAAATAAATACATGCAATGCCTGAAATGCTTTTTCTGGAAAAATCTGGAGTATCCAAGTTTTGATGATCTTCAAATTGTAATGTTATTTCTTGGTCATGCTTGAGAATTTACTTGATCTTTTCATCAGAGGCTAGGAGGAGGAAGTGGTTGGAAAACAATCCAGAATCATCAAGTAATGAGGACCCTGTGGTGTTTGACACATCCATAGTTCCTTGGTGGGCTTGGATCAAGCGCTACCATCTGCCAGAGGCTGAGCTACTCAATGGTATAATATTAACATGTTTGCATGATTCTTTTGTCATGCTTTCTTAAAGCTCGTGTGAGTGAAATAAGGCCAAGACCTTGTGTATGCATCTTTTTCAAAACGATCTTAGCTAAGTAGTTTGATATTGAGATTGGAGGTTGAAATCCCCTCCCTCCACCTGTACTAAAAAAACGGTCTGCTTGAGAGTGATTTTGAAATGATTAAATCACTCCAAAAGCATGCTTTTAATGATTCAAAACCAATCTGATTGTATGAAAATTGTGCTTAAAAGTGTACGATTAAGGCCATGTTTTAGAGTGATTTTGAACAAATATTTCAAAATTCTCTCTCATTCATGTTTGTCATGATAGGTCAGTCATAACATTGGTTTCTCTTCATTTTTATCACAATTCTTTTAAACAATTTTGAAACAAGTAAAGTGATTTGGATAGAGCTTTTGCCTTTCAAGACAAGTCCATGGTTTTTATATCATATTTTTGAATTTCTATTTGCACATAATTTAGTGTTGAAAAATTCACTGAGCTTTGAACGCACTAGTCACAAGTAATATAGTGATGAACAAAGTATCATATCATATCTAACATATTGAAGTAAATTTGAGCTGTACAATGGTTTTTGATGCAGGGCGTGCAGCCATGGTGGGGTTCTTCATGGCTTACTTCGTCGATAGCTTGACAGGGGTAGGACTAGTAGGTCAAATGGGCAACTTCTTCTGCAAAACATTGCTATTTGTTGCTGTGGTGGGAGTTCTTTTGATAAGAAAGAATGAAGATATAGAGACTCTAAAGAAGTTGATTGATGAAACAACATTTTACGACAAGCAATGGCAAGCAACTTGGCAGGATGAAACCTCAGGCTCAGGCAAAATGTAATATCAGAAAAGTTGCCTGTTTCTCGTTTTGAATTGACTATGTTTGTATCTTTAAAGATTTGAGCTAAGTAGAGAAAAGATAATGTGAGCTCTGAAAGATGCTAAATCTTTAGGCCTCAGTTTAATGCTTCTTGAAGTTGACGCTTCTTGAGGGTTCCAATGAAGATCTCTCCAAAACAGCCTTGGTTTATCTGGAAATATGGGTTTGAGGGTTAAGCTATTTTGATGGATTTATTATCAGATTTAGCTCAATCAGTTTCCCAAAATTCCATTTTTGTTGCGCAAGAAGTCATGTGGGGAAATTTTGGTTTTGTTTATAGGGGCCCTTTATTAACAGATGCATTTATACATACATATGCCTAAAGAGTCTTGAAGATGAGTCATCCACCCAAGATTTGAGCATTTATTGAACTTATAAGGGGGAGTGATATACAAACAATTTTTTTTTGAGAGATCACTTTTGCTACTGGTCAATTTCTCTTTCATTTCCAACTATGATATTTTGTAAATAATATACTGGGATGTTTTCAAATTAATTTTGATAGATGTCTAACAAGAGGTGGATTCTAACATTGAGGTGTTTCTTGGTAAGGTGATTAGAATCACCTAAAAAAAAGTTACCCACA

mRNA sequence

ATGTCGTCCATGGCTTTGTTTTCTCCTTCATCCCATCTTTCTACTTTCTCTCCTTCACACCACACAACCCATTTCTCCTTCAGACCCTTTTCTTCTCTCAGAACCAGAAACCCTTCTTCTTCTTCTTCCTCTCTCTTCACTATCAGGGCCACAGCTGACAATGGTGCCGGAATTTCAGGTGGTTCAGCCACTGTTTCTGTAGAAACCCCCGTCGAGCAGAAGGATCCGGAGCCGGCCAAGCTTGCACCCGAAGAGCAGGAGAGCCTCGCCGGAACCAATGGGTCGGTGGCGGCTGCTGAAGAAGTTGTCGAGGTGGTTAGCAAATTTGAAGACCCTAAATGGGTTAATGGGACTTGGGATTTGAATCAGTTCCAGAAAAATGGAAGCACTGATTGGGATGCTGTTATTGATGCTGAGGCTAGGAGGAGGAAGTGGTTGGAAAACAATCCAGAATCATCAAGTAATGAGGACCCTGTGGTGTTTGACACATCCATAGTTCCTTGGTGGGCTTGGATCAAGCGCTACCATCTGCCAGAGGCTGAGCTACTCAATGGGCGTGCAGCCATGGTGGGGTTCTTCATGGCTTACTTCGTCGATAGCTTGACAGGGGTAGGACTAGTAGGTCAAATGGGCAACTTCTTCTGCAAAACATTGCTATTTGTTGCTGTGGTGGGAGTTCTTTTGATAAGAAAGAATGAAGATATAGAGACTCTAAAGAAGTTGATTGATGAAACAACATTTTACGACAAGCAATGGCAAGCAACTTGGCAGGATGAAACCTCAGGCTCAGGCAAAATGTAA

Coding sequence (CDS)

ATGTCGTCCATGGCTTTGTTTTCTCCTTCATCCCATCTTTCTACTTTCTCTCCTTCACACCACACAACCCATTTCTCCTTCAGACCCTTTTCTTCTCTCAGAACCAGAAACCCTTCTTCTTCTTCTTCCTCTCTCTTCACTATCAGGGCCACAGCTGACAATGGTGCCGGAATTTCAGGTGGTTCAGCCACTGTTTCTGTAGAAACCCCCGTCGAGCAGAAGGATCCGGAGCCGGCCAAGCTTGCACCCGAAGAGCAGGAGAGCCTCGCCGGAACCAATGGGTCGGTGGCGGCTGCTGAAGAAGTTGTCGAGGTGGTTAGCAAATTTGAAGACCCTAAATGGGTTAATGGGACTTGGGATTTGAATCAGTTCCAGAAAAATGGAAGCACTGATTGGGATGCTGTTATTGATGCTGAGGCTAGGAGGAGGAAGTGGTTGGAAAACAATCCAGAATCATCAAGTAATGAGGACCCTGTGGTGTTTGACACATCCATAGTTCCTTGGTGGGCTTGGATCAAGCGCTACCATCTGCCAGAGGCTGAGCTACTCAATGGGCGTGCAGCCATGGTGGGGTTCTTCATGGCTTACTTCGTCGATAGCTTGACAGGGGTAGGACTAGTAGGTCAAATGGGCAACTTCTTCTGCAAAACATTGCTATTTGTTGCTGTGGTGGGAGTTCTTTTGATAAGAAAGAATGAAGATATAGAGACTCTAAAGAAGTTGATTGATGAAACAACATTTTACGACAAGCAATGGCAAGCAACTTGGCAGGATGAAACCTCAGGCTCAGGCAAAATGTAA

Protein sequence

MSSMALFSPSSHLSTFSPSHHTTHFSFRPFSSLRTRNPSSSSSSLFTIRATADNGAGISGGSATVSVETPVEQKDPEPAKLAPEEQESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGTWDLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKKLIDETTFYDKQWQATWQDETSGSGKM*

Homology

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BLAST of CsaV3_3G002290 vs. NCBI nr
Match: XP_004147237.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucumis sativus] >KGN55822.1 hypothetical protein Csa_009505 [Cucumis sativus])

HSP 1 Score: 526.6 bits (1355), Expect = 1.3e-145
Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0


Query: 1   MSSMALFSPSSHLSTFSPSHHTTHFSFRPFSSLRTRNPSSSSSSLFTIRATADNGAGISG 60
           MSSMALFSPSSHLSTFSPSHHTTHFSFRPFSSLRTRNPSSSSSSLFTIRATADNGAGISG
Sbjct: 1   MSSMALFSPSSHLSTFSPSHHTTHFSFRPFSSLRTRNPSSSSSSLFTIRATADNGAGISG 60

Query: 61  GSATVSVETPVEQKDPEPAKLAPEEQESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGTWD 120
           GSATVSVETPVEQKDPEPAKLAPEEQESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGTWD
Sbjct: 61  GSATVSVETPVEQKDPEPAKLAPEEQESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGTWD 120

Query: 121 LNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPEA 180
           LNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPEA
Sbjct: 121 LNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPEA 180

Query: 181 ELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKK 240
           ELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKK
Sbjct: 181 ELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKK 240

Query: 241 LIDETTFYDKQWQATWQDETSGSGKM 267
           LIDETTFYDKQWQATWQDETSGSGKM
Sbjct: 241 LIDETTFYDKQWQATWQDETSGSGKM 266

[Close]

BLAST of CsaV3_3G002290 vs. NCBI nr
Match: XP_038906355.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 491.5 bits (1264), Expect = 4.6e-135
Identity = 254/267 (95.13%), Postives = 256/267 (95.88%), Query Frame = 0


Query: 1   MSSMALFSPSSHLSTFSP-SHHTTHFSFRPFSSLRTRNPSSSSSSLFTIRATADNGAGIS 60
           MSSMALFSPSSHLST SP SHH THFSFRPFSSLRTRNP  SSSSLFTIRATADNGAGIS
Sbjct: 1   MSSMALFSPSSHLSTLSPSSHHRTHFSFRPFSSLRTRNP--SSSSLFTIRATADNGAGIS 60

Query: 61  GGSATVSVETPVEQKDPEPAKLAPEEQESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGTW 120
           GGSA V+VETPVEQKDPEPAK   EEQESLAGTNGSVAAAEE VEVVSKFEDPKW+NGTW
Sbjct: 61  GGSAAVAVETPVEQKDPEPAKAVSEEQESLAGTNGSVAAAEE-VEVVSKFEDPKWINGTW 120

Query: 121 DLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPE 180
           DLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPE
Sbjct: 121 DLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPE 180

Query: 181 AELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLK 240
           AELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLK
Sbjct: 181 AELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLK 240

Query: 241 KLIDETTFYDKQWQATWQDETSGSGKM 267
           KLIDETTFYDKQWQATWQDE SGSGKM
Sbjct: 241 KLIDETTFYDKQWQATWQDENSGSGKM 264

[Close]

BLAST of CsaV3_3G002290 vs. NCBI nr
Match: XP_008448777.1 (PREDICTED: uncharacterized protein LOC103490842 [Cucumis melo])

HSP 1 Score: 490.7 bits (1262), Expect = 7.8e-135
Identity = 257/269 (95.54%), Postives = 259/269 (96.28%), Query Frame = 0


Query: 1   MSSMALFSPSSHLSTFSP-SHHTTHFSFRPFSSLRTRNP-SSSSSSLFTIRATADNGAGI 60
           MSSMALFSPSSHLST SP SHHTTHFSFRPFSSLRTRNP SSSSSSLFTIRATADNGAGI
Sbjct: 1   MSSMALFSPSSHLSTLSPSSHHTTHFSFRPFSSLRTRNPSSSSSSSLFTIRATADNGAGI 60

Query: 61  SGGSATVSVETPVEQKDPEPAKLAPEEQESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGT 120
           SGGSATV+VETPVEQKDPEPA      +ESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGT
Sbjct: 61  SGGSATVAVETPVEQKDPEPA------EESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGT 120

Query: 121 WDLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLP 180
           WDLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLP
Sbjct: 121 WDLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLP 180

Query: 181 EAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETL 240
           EAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETL
Sbjct: 181 EAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETL 240

Query: 241 KKLIDETTFYDKQWQATWQDET-SGSGKM 267
           KKLIDETTFYDKQWQATWQDET SGSGKM
Sbjct: 241 KKLIDETTFYDKQWQATWQDETSSGSGKM 263

[Close]

BLAST of CsaV3_3G002290 vs. NCBI nr
Match: KAA0041046.1 (uncharacterized protein E6C27_scaffold477G00170 [Cucumis melo var. makuwa] >TYK12056.1 uncharacterized protein E5676_scaffold1017G00700 [Cucumis melo var. makuwa])

HSP 1 Score: 489.2 bits (1258), Expect = 2.3e-134
Identity = 256/269 (95.17%), Postives = 259/269 (96.28%), Query Frame = 0


Query: 1   MSSMALFSPSSHLSTFSP-SHHTTHFSFRPFSSLRTRNP-SSSSSSLFTIRATADNGAGI 60
           MSSMALFSPSSHLST SP SHHTTHFSFRPFSSLRTRNP SSSSSSLFTIRATADNGAGI
Sbjct: 1   MSSMALFSPSSHLSTLSPSSHHTTHFSFRPFSSLRTRNPSSSSSSSLFTIRATADNGAGI 60

Query: 61  SGGSATVSVETPVEQKDPEPAKLAPEEQESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGT 120
           SGGSATV+VETPVEQKDPEPA      +ESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGT
Sbjct: 61  SGGSATVAVETPVEQKDPEPA------EESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGT 120

Query: 121 WDLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLP 180
           WDLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLP
Sbjct: 121 WDLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLP 180

Query: 181 EAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETL 240
           EAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETL
Sbjct: 181 EAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETL 240

Query: 241 KKLIDETTFYDKQWQATWQDET-SGSGKM 267
           KKLIDETTFYDKQWQATWQDET SGSGK+
Sbjct: 241 KKLIDETTFYDKQWQATWQDETSSGSGKI 263

[Close]

BLAST of CsaV3_3G002290 vs. NCBI nr
Match: XP_022965154.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 424.1 bits (1089), Expect = 9.0e-115
Identity = 226/267 (84.64%), Postives = 236/267 (88.39%), Query Frame = 0


Query: 1   MSSMALFSPSSHLSTFSP-SHHTTHFSFRPFSSLRTRNPSSSSSSLFTIRATADNGAGIS 60
           MSSMALFSP S LS+ SP SHH THF  RPFSSLR+RNPSS           ADNGAGIS
Sbjct: 1   MSSMALFSPPSRLSSLSPSSHHRTHFPSRPFSSLRSRNPSS--------WVAADNGAGIS 60

Query: 61  GGSATVSVETPVEQKDPEPAKLAPEEQESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGTW 120
           GGS  V+VE  V QKDPEP   A E++ESLA TNGSVAA EEVV VVSKFEDPKWVNGTW
Sbjct: 61  GGS--VAVEPAVVQKDPEP---AVEKKESLAETNGSVAAVEEVV-VVSKFEDPKWVNGTW 120

Query: 121 DLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPE 180
           DLNQF+K+GSTDWDAVIDAEARRRKWLENNPESSSNEDPV+FDTSIVPWWAWIKRYHLPE
Sbjct: 121 DLNQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPE 180

Query: 181 AELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLK 240
           AE+LNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLK
Sbjct: 181 AEILNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLK 240

Query: 241 KLIDETTFYDKQWQATWQDETSGSGKM 267
           KLIDETTFYDKQWQATWQDET GSGK+
Sbjct: 241 KLIDETTFYDKQWQATWQDETKGSGKV 253

[Close]

BLAST of CsaV3_3G002290 vs. ExPASy Swiss-Prot
Match: Q9SYX1 (Light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIL3.1 PE=1 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 4.1e-78
Identity = 160/270 (59.26%), Postives = 194/270 (71.85%), Query Frame = 0


Query: 4   MALFSPSSHLSTFSPSHHTTHFSFRPFSSLRTRNPSSSSSSLFTIRATADNGAGISGGSA 63
           MALFSP    S+    +    FSF   SS R        S L   RA++D+G+  +  +A
Sbjct: 1   MALFSPPISSSSLQNPNFIPKFSFSLLSSNR-------FSLLSVTRASSDSGS--TSPTA 60

Query: 64  TVSVETP----VEQKDPEPAKLAPEEQESLAGTNGSVAAAE-EVVEVVSKFEDPKWVNGT 123
            VSVE P    V  K+P  +  A +++E+    N +V   E +  E V KF+D +W+NGT
Sbjct: 61  AVSVEAPEPVEVIVKEPPQSTPAVKKEETATAKNVAVEGEEMKTTESVVKFQDARWINGT 120

Query: 124 WDLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLP 183
           WDL QF+K+G TDWD+VI AEA+RRKWLE NPE++SN++PV+FDTSI+PWWAWIKRYHLP
Sbjct: 121 WDLKQFEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIPWWAWIKRYHLP 180

Query: 184 EAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETL 243
           EAELLNGRAAM+GFFMAYFVDSLTGVGLV QMGNFFCKTLLFVAV GVL IRKNED++ L
Sbjct: 181 EAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDVDKL 240

Query: 244 KKLIDETTFYDKQWQATWQ---DETSGSGK 266
           K L DETT YDKQWQA W+   DE+ GS K
Sbjct: 241 KNLFDETTLYDKQWQAAWKNDDDESLGSKK 261

[Close]

BLAST of CsaV3_3G002290 vs. ExPASy Swiss-Prot
Match: Q6NKS4 (Light-harvesting complex-like protein 3 isotype 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIL3.2 PE=1 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 4.0e-73
Identity = 151/264 (57.20%), Postives = 184/264 (69.70%), Query Frame = 0


Query: 3   SMALFSPSSHLSTFSPSHHTTHFSFRPFSSLRTRNPSSSSSSLFTI-RATADNGAGISGG 62
           SMALFSP    S  +P+             + T   S+   SL ++ RA++DNG      
Sbjct: 4   SMALFSPPISSSLQNPN---------LIPKISTSLLSTKRFSLISVPRASSDNGT----T 63

Query: 63  SATVSVETPVEQKDPEPAKLAPEEQESLAGTNGSVA--AAEEVVEVVSKFEDPKWVNGTW 122
           S  V +  P      E    +P E  S A  NG+V   A +   E V K+++ KWVNGTW
Sbjct: 64  SPVVEIPKPASVAVEEVPVKSPAESSS-ASENGAVGGEATDSSTETVIKYQNAKWVNGTW 123

Query: 123 DLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPE 182
           DL QF+K+G TDWD+VI +EA+RRKWLE+NPE++SN++ VVFDTSI+PWWAW+KRYHLPE
Sbjct: 124 DLKQFEKDGKTDWDSVIVSEAKRRKWLEDNPETTSNDELVVFDTSIIPWWAWMKRYHLPE 183

Query: 183 AELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLK 242
           AELLNGRAAM+GFFMAYFVDSLTGVGLV QMGNFFCKTLLFVAV GVL IRKNED++ LK
Sbjct: 184 AELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDLDKLK 243

Query: 243 KLIDETTFYDKQWQATWQDETSGS 264
            L DETT YDKQWQA W++  S +
Sbjct: 244 DLFDETTLYDKQWQAAWKEPDSST 253

[Close]

BLAST of CsaV3_3G002290 vs. ExPASy TrEMBL
Match: A0A0A0L5D8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017160 PE=4 SV=1)

HSP 1 Score: 526.6 bits (1355), Expect = 6.2e-146
Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0


Query: 1   MSSMALFSPSSHLSTFSPSHHTTHFSFRPFSSLRTRNPSSSSSSLFTIRATADNGAGISG 60
           MSSMALFSPSSHLSTFSPSHHTTHFSFRPFSSLRTRNPSSSSSSLFTIRATADNGAGISG
Sbjct: 1   MSSMALFSPSSHLSTFSPSHHTTHFSFRPFSSLRTRNPSSSSSSLFTIRATADNGAGISG 60

Query: 61  GSATVSVETPVEQKDPEPAKLAPEEQESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGTWD 120
           GSATVSVETPVEQKDPEPAKLAPEEQESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGTWD
Sbjct: 61  GSATVSVETPVEQKDPEPAKLAPEEQESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGTWD 120

Query: 121 LNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPEA 180
           LNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPEA
Sbjct: 121 LNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPEA 180

Query: 181 ELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKK 240
           ELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKK
Sbjct: 181 ELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKK 240

Query: 241 LIDETTFYDKQWQATWQDETSGSGKM 267
           LIDETTFYDKQWQATWQDETSGSGKM
Sbjct: 241 LIDETTFYDKQWQATWQDETSGSGKM 266

[Close]

BLAST of CsaV3_3G002290 vs. ExPASy TrEMBL
Match: A0A1S3BLD8 (uncharacterized protein LOC103490842 OS=Cucumis melo OX=3656 GN=LOC103490842 PE=4 SV=1)

HSP 1 Score: 490.7 bits (1262), Expect = 3.8e-135
Identity = 257/269 (95.54%), Postives = 259/269 (96.28%), Query Frame = 0


Query: 1   MSSMALFSPSSHLSTFSP-SHHTTHFSFRPFSSLRTRNP-SSSSSSLFTIRATADNGAGI 60
           MSSMALFSPSSHLST SP SHHTTHFSFRPFSSLRTRNP SSSSSSLFTIRATADNGAGI
Sbjct: 1   MSSMALFSPSSHLSTLSPSSHHTTHFSFRPFSSLRTRNPSSSSSSSLFTIRATADNGAGI 60

Query: 61  SGGSATVSVETPVEQKDPEPAKLAPEEQESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGT 120
           SGGSATV+VETPVEQKDPEPA      +ESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGT
Sbjct: 61  SGGSATVAVETPVEQKDPEPA------EESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGT 120

Query: 121 WDLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLP 180
           WDLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLP
Sbjct: 121 WDLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLP 180

Query: 181 EAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETL 240
           EAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETL
Sbjct: 181 EAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETL 240

Query: 241 KKLIDETTFYDKQWQATWQDET-SGSGKM 267
           KKLIDETTFYDKQWQATWQDET SGSGKM
Sbjct: 241 KKLIDETTFYDKQWQATWQDETSSGSGKM 263

[Close]

BLAST of CsaV3_3G002290 vs. ExPASy TrEMBL
Match: A0A5A7TG76 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00700 PE=4 SV=1)

HSP 1 Score: 489.2 bits (1258), Expect = 1.1e-134
Identity = 256/269 (95.17%), Postives = 259/269 (96.28%), Query Frame = 0


Query: 1   MSSMALFSPSSHLSTFSP-SHHTTHFSFRPFSSLRTRNP-SSSSSSLFTIRATADNGAGI 60
           MSSMALFSPSSHLST SP SHHTTHFSFRPFSSLRTRNP SSSSSSLFTIRATADNGAGI
Sbjct: 1   MSSMALFSPSSHLSTLSPSSHHTTHFSFRPFSSLRTRNPSSSSSSSLFTIRATADNGAGI 60

Query: 61  SGGSATVSVETPVEQKDPEPAKLAPEEQESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGT 120
           SGGSATV+VETPVEQKDPEPA      +ESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGT
Sbjct: 61  SGGSATVAVETPVEQKDPEPA------EESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGT 120

Query: 121 WDLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLP 180
           WDLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLP
Sbjct: 121 WDLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLP 180

Query: 181 EAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETL 240
           EAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETL
Sbjct: 181 EAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETL 240

Query: 241 KKLIDETTFYDKQWQATWQDET-SGSGKM 267
           KKLIDETTFYDKQWQATWQDET SGSGK+
Sbjct: 241 KKLIDETTFYDKQWQATWQDETSSGSGKI 263

[Close]

BLAST of CsaV3_3G002290 vs. ExPASy TrEMBL
Match: A0A6J1HQ78 (light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111465096 PE=4 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 4.4e-115
Identity = 226/267 (84.64%), Postives = 236/267 (88.39%), Query Frame = 0


Query: 1   MSSMALFSPSSHLSTFSP-SHHTTHFSFRPFSSLRTRNPSSSSSSLFTIRATADNGAGIS 60
           MSSMALFSP S LS+ SP SHH THF  RPFSSLR+RNPSS           ADNGAGIS
Sbjct: 1   MSSMALFSPPSRLSSLSPSSHHRTHFPSRPFSSLRSRNPSS--------WVAADNGAGIS 60

Query: 61  GGSATVSVETPVEQKDPEPAKLAPEEQESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGTW 120
           GGS  V+VE  V QKDPEP   A E++ESLA TNGSVAA EEVV VVSKFEDPKWVNGTW
Sbjct: 61  GGS--VAVEPAVVQKDPEP---AVEKKESLAETNGSVAAVEEVV-VVSKFEDPKWVNGTW 120

Query: 121 DLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPE 180
           DLNQF+K+GSTDWDAVIDAEARRRKWLENNPESSSNEDPV+FDTSIVPWWAWIKRYHLPE
Sbjct: 121 DLNQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPE 180

Query: 181 AELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLK 240
           AE+LNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLK
Sbjct: 181 AEILNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLK 240

Query: 241 KLIDETTFYDKQWQATWQDETSGSGKM 267
           KLIDETTFYDKQWQATWQDET GSGK+
Sbjct: 241 KLIDETTFYDKQWQATWQDETKGSGKV 253

[Close]

BLAST of CsaV3_3G002290 vs. ExPASy TrEMBL
Match: A0A6J1EC24 (light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431193 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 1.7e-114
Identity = 224/267 (83.90%), Postives = 235/267 (88.01%), Query Frame = 0


Query: 1   MSSMALFSPSSHLSTFSP-SHHTTHFSFRPFSSLRTRNPSSSSSSLFTIRATADNGAGIS 60
           MSSMALFSP S LS+ SP SHH THF  RPFSSLR+RNPSS           ADNGAGIS
Sbjct: 1   MSSMALFSPPSRLSSLSPSSHHRTHFPSRPFSSLRSRNPSS--------WVAADNGAGIS 60

Query: 61  GGSATVSVETPVEQKDPEPAKLAPEEQESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGTW 120
           GGS  V+VE+ V QKDPEP     E+QE LA TNGSVAA EEVV VVSKFEDPKWVNGTW
Sbjct: 61  GGS--VAVESAVVQKDPEP---VVEKQEILAETNGSVAAVEEVV-VVSKFEDPKWVNGTW 120

Query: 121 DLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPE 180
           DLNQF+K+GSTDWDAVIDAEARRRKWLENNPESSSNEDPV+FDTSIVPWWAWIKRYHLPE
Sbjct: 121 DLNQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPE 180

Query: 181 AELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLK 240
           AE+LNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLF+AVVGVLLIRKNEDIETLK
Sbjct: 181 AEILNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFIAVVGVLLIRKNEDIETLK 240

Query: 241 KLIDETTFYDKQWQATWQDETSGSGKM 267
           KLIDETTFYDKQWQATWQDET GSGK+
Sbjct: 241 KLIDETTFYDKQWQATWQDETKGSGKV 253

[Close]

BLAST of CsaV3_3G002290 vs. TAIR 10
Match: AT4G17600.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 292.7 bits (748), Expect = 2.9e-79
Identity = 160/270 (59.26%), Postives = 194/270 (71.85%), Query Frame = 0


Query: 4   MALFSPSSHLSTFSPSHHTTHFSFRPFSSLRTRNPSSSSSSLFTIRATADNGAGISGGSA 63
           MALFSP    S+    +    FSF   SS R        S L   RA++D+G+  +  +A
Sbjct: 1   MALFSPPISSSSLQNPNFIPKFSFSLLSSNR-------FSLLSVTRASSDSGS--TSPTA 60

Query: 64  TVSVETP----VEQKDPEPAKLAPEEQESLAGTNGSVAAAE-EVVEVVSKFEDPKWVNGT 123
            VSVE P    V  K+P  +  A +++E+    N +V   E +  E V KF+D +W+NGT
Sbjct: 61  AVSVEAPEPVEVIVKEPPQSTPAVKKEETATAKNVAVEGEEMKTTESVVKFQDARWINGT 120

Query: 124 WDLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLP 183
           WDL QF+K+G TDWD+VI AEA+RRKWLE NPE++SN++PV+FDTSI+PWWAWIKRYHLP
Sbjct: 121 WDLKQFEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIPWWAWIKRYHLP 180

Query: 184 EAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETL 243
           EAELLNGRAAM+GFFMAYFVDSLTGVGLV QMGNFFCKTLLFVAV GVL IRKNED++ L
Sbjct: 181 EAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDVDKL 240

Query: 244 KKLIDETTFYDKQWQATWQ---DETSGSGK 266
           K L DETT YDKQWQA W+   DE+ GS K
Sbjct: 241 KNLFDETTLYDKQWQAAWKNDDDESLGSKK 261

[Close]

BLAST of CsaV3_3G002290 vs. TAIR 10
Match: AT5G47110.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 276.2 bits (705), Expect = 2.8e-74
Identity = 151/264 (57.20%), Postives = 184/264 (69.70%), Query Frame = 0


Query: 3   SMALFSPSSHLSTFSPSHHTTHFSFRPFSSLRTRNPSSSSSSLFTI-RATADNGAGISGG 62
           SMALFSP    S  +P+             + T   S+   SL ++ RA++DNG      
Sbjct: 4   SMALFSPPISSSLQNPN---------LIPKISTSLLSTKRFSLISVPRASSDNGT----T 63

Query: 63  SATVSVETPVEQKDPEPAKLAPEEQESLAGTNGSVA--AAEEVVEVVSKFEDPKWVNGTW 122
           S  V +  P      E    +P E  S A  NG+V   A +   E V K+++ KWVNGTW
Sbjct: 64  SPVVEIPKPASVAVEEVPVKSPAESSS-ASENGAVGGEATDSSTETVIKYQNAKWVNGTW 123

Query: 123 DLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPE 182
           DL QF+K+G TDWD+VI +EA+RRKWLE+NPE++SN++ VVFDTSI+PWWAW+KRYHLPE
Sbjct: 124 DLKQFEKDGKTDWDSVIVSEAKRRKWLEDNPETTSNDELVVFDTSIIPWWAWMKRYHLPE 183

Query: 183 AELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLK 242
           AELLNGRAAM+GFFMAYFVDSLTGVGLV QMGNFFCKTLLFVAV GVL IRKNED++ LK
Sbjct: 184 AELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDLDKLK 243

Query: 243 KLIDETTFYDKQWQATWQDETSGS 264
            L DETT YDKQWQA W++  S +
Sbjct: 244 DLFDETTLYDKQWQAAWKEPDSST 253

The following BLAST results are available for this feature:

BLAST of CsaV3_3G002290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147237.1	1.3e-145	100.00	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucumis sativu...	[more]
XP_038906355.1	4.6e-135	95.13	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Benincasa hisp...	[more]
XP_008448777.1	7.8e-135	95.54	PREDICTED: uncharacterized protein LOC103490842 [Cucumis melo]	[more]
KAA0041046.1	2.3e-134	95.17	uncharacterized protein E6C27_scaffold477G00170 [Cucumis melo var. makuwa] >TYK1...	[more]
XP_022965154.1	9.0e-115	84.64	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita maxi...	[more]

BLAST of CsaV3_3G002290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYX1	4.1e-78	59.26	Light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Arabidopsis ...	[more]
Q6NKS4	4.0e-73	57.20	Light-harvesting complex-like protein 3 isotype 2, chloroplastic OS=Arabidopsis ...	[more]

BLAST of CsaV3_3G002290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5D8	6.2e-146	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017160 PE=4 SV=1	[more]
A0A1S3BLD8	3.8e-135	95.54	uncharacterized protein LOC103490842 OS=Cucumis melo OX=3656 GN=LOC103490842 PE=...	[more]
A0A5A7TG76	1.1e-134	95.17	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1HQ78	4.4e-115	84.64	light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita ma...	[more]
A0A6J1EC24	1.7e-114	83.90	light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita mo...	[more]

BLAST of CsaV3_3G002290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17600.1	2.9e-79	59.26	Chlorophyll A-B binding family protein	[more]
AT5G47110.1	2.8e-74	57.20	Chlorophyll A-B binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..93
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 35..264
None	No IPR available	PANTHER	PTHR14154:SF87	LIGHT-HARVESTING COMPLEX-LIKE PROTEIN 3 ISOTYPE 1, CHLOROPLASTIC-RELATED	coord: 35..264
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 133..215

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G002290.1	CsaV3_3G002290.1	mRNA