CsaV3_3G001480 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G001480
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionBinding partner of ACD11 1 isoform X2
Locationchr3: 1143351 .. 1144421 (-)
RNA-Seq ExpressionCsaV3_3G001480
SyntenyCsaV3_3G001480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGGAAAATAAGAGAGTACCGAAGAAGATAGGAGCAGTTTTAGGTTATAAATTGGAGAAAGGTAATGGGAGAGGGAGAGATGATGAAATGGATACCAACGGTAAAGATATCGTTTAATTTACTTTTTAAAGGTGTAAGCTTTAATGCAACTTTTTGGTATTTAGAAGTATTTTTGTAATGAATCATTAACGGTTTATGTTTAAATAATAATTGATGGGTACTTTTGTAACATTAATTTTTTTTTTTTAAAAAATATTCTTTTAAAATAGGTTTAGAGATATTTTCGAAACAACTATTTCCGTCTAAAATTAACAACCAAAGTTTTTTTAACTATTCACGCAAGTGCAAGGATATTTTTAAAAACTTTTGAAAGTTTGAGAAACGTTTTACACCAATACAGAGTTCAAATGGATTTTTTTAGAATTTATATTAATAAGTATAGATGATCGTTTTTTTCTGTTGGATGTGAGAATCAAACCAAATTAACCTACATGAAATTATAATAGGGTCTAATTTTTCAATGAAAAATTCTCATGACACAAATAAATTGAAATTATTTACTAGACATAACAAAAATAAGTTAAATGGAGAAATATATTTTTGCAATTATGCTATAATTGAACTTTTTTTATTCTTTAGATTTGATTAGACATTAATAAGAATGGATTTGATATTTTTAAATTCTTAAAAAAGCTTACATTTTAAAATTTAATATATATATATTTATTTTTTAATGTAAACATTAAATATAAAATTACAACTCAAGAAAAGACTTGCAAAGGTTTAGATAAAATTTCACAGCTGAAATAGACAGAACCGTTAAATAGCCGCGTGGACCGTCACAGTTTCCGTCCAGAAGGCCGCCCCGTTATGGAAATTCCCACCGTCCCGTTAGCTCCGTTTCGAATCAACGCCGGATCTTTTACGCGGTTAATAGCGCGTGTAGTTCACGTTTATAGTACGAAATATATCGATACTATAAATATCCATCAAACCGGAGCCTTGTTTGTTCGTGCCACAGCGATTTTTCTCTCATCAGAGGCGACGAAGACTTGTCCGCACTGA

mRNA sequence

ATGAAGAAGGAAAATAAGAGAGTACCGAAGAAGATAGGAGCAGTTTTAGGTTATAAATTGGAGAAAGGTAATGGGAGAGGGAGAGATGATGAAATGGATACCAACGAACCGTTAAATAGCCGCGTGGACCGTCACAGTTTCCGTCCAGAAGGCCGCCCCGTTATGGAAATTCCCACCGTCCCGTTAGCTCCGTTTCGAATCAACGCCGGATCTTTTACGCGGTTAATAGCGCGTGTAGTTCACGTTTATAGTACGAAATATATCGATACTATAAATATCCATCAAACCGGAGCCTTGTTTGTTCGTGCCACAGCGATTTTTCTCTCATCAGAGGCGACGAAGACTTGTCCGCACTGA

Coding sequence (CDS)

ATGAAGAAGGAAAATAAGAGAGTACCGAAGAAGATAGGAGCAGTTTTAGGTTATAAATTGGAGAAAGGTAATGGGAGAGGGAGAGATGATGAAATGGATACCAACGAACCGTTAAATAGCCGCGTGGACCGTCACAGTTTCCGTCCAGAAGGCCGCCCCGTTATGGAAATTCCCACCGTCCCGTTAGCTCCGTTTCGAATCAACGCCGGATCTTTTACGCGGTTAATAGCGCGTGTAGTTCACGTTTATAGTACGAAATATATCGATACTATAAATATCCATCAAACCGGAGCCTTGTTTGTTCGTGCCACAGCGATTTTTCTCTCATCAGAGGCGACGAAGACTTGTCCGCACTGA

Protein sequence

MKKENKRVPKKIGAVLGYKLEKGNGRGRDDEMDTNEPLNSRVDRHSFRPEGRPVMEIPTVPLAPFRINAGSFTRLIARVVHVYSTKYIDTINIHQTGALFVRATAIFLSSEATKTCPH*
Homology
[Close]
BLAST of CsaV3_3G001480 vs. NCBI nr
Match: KGN55733.1 (hypothetical protein Csa_010687 [Cucumis sativus])

HSP 1 Score: 238.4 bits (607), Expect = 3.1e-59
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MKKENKRVPKKIGAVLGYKLEKGNGRGRDDEMDTNEPLNSRVDRHSFRPEGRPVMEIPTV 60
           MKKENKRVPKKIGAVLGYKLEKGNGRGRDDEMDTNEPLNSRVDRHSFRPEGRPVMEIPTV
Sbjct: 1   MKKENKRVPKKIGAVLGYKLEKGNGRGRDDEMDTNEPLNSRVDRHSFRPEGRPVMEIPTV 60

Query: 61  PLAPFRINAGSFTRLIARVVHVYSTKYIDTINIHQTGALFVRATAIFLSSEATKTCPH 119
           PLAPFRINAGSFTRLIARVVHVYSTKYIDTINIHQTGALFVRATAIFLSSEATKTCPH
Sbjct: 61  PLAPFRINAGSFTRLIARVVHVYSTKYIDTINIHQTGALFVRATAIFLSSEATKTCPH 118

[Close]
BLAST of CsaV3_3G001480 vs. NCBI nr
Match: KAA0053025.1 (binding partner of ACD11 1 isoform X2 [Cucumis melo var. makuwa] >TYK11480.1 binding partner of ACD11 1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 1.8e-06
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 55 MEIPTVPLAPFRINAGSFTRLIARVVHVYSTKY 88
          MEIPTVPLAPFRINAGSFTRLIARVVHVYS  +
Sbjct: 1  MEIPTVPLAPFRINAGSFTRLIARVVHVYSFNF 33

[Close]
BLAST of CsaV3_3G001480 vs. ExPASy TrEMBL
Match: A0A0A0L1T5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G008900 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.5e-59
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MKKENKRVPKKIGAVLGYKLEKGNGRGRDDEMDTNEPLNSRVDRHSFRPEGRPVMEIPTV 60
           MKKENKRVPKKIGAVLGYKLEKGNGRGRDDEMDTNEPLNSRVDRHSFRPEGRPVMEIPTV
Sbjct: 1   MKKENKRVPKKIGAVLGYKLEKGNGRGRDDEMDTNEPLNSRVDRHSFRPEGRPVMEIPTV 60

Query: 61  PLAPFRINAGSFTRLIARVVHVYSTKYIDTINIHQTGALFVRATAIFLSSEATKTCPH 119
           PLAPFRINAGSFTRLIARVVHVYSTKYIDTINIHQTGALFVRATAIFLSSEATKTCPH
Sbjct: 61  PLAPFRINAGSFTRLIARVVHVYSTKYIDTINIHQTGALFVRATAIFLSSEATKTCPH 118

[Close]
BLAST of CsaV3_3G001480 vs. ExPASy TrEMBL
Match: A0A5A7UH68 (Binding partner of ACD11 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001410 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 8.7e-07
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 55 MEIPTVPLAPFRINAGSFTRLIARVVHVYSTKY 88
          MEIPTVPLAPFRINAGSFTRLIARVVHVYS  +
Sbjct: 1  MEIPTVPLAPFRINAGSFTRLIARVVHVYSFNF 33

The following BLAST results are available for this feature:
BLAST of CsaV3_3G001480 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55733.13.1e-59100.00hypothetical protein Csa_010687 [Cucumis sativus][more]
KAA0053025.11.8e-0690.91binding partner of ACD11 1 isoform X2 [Cucumis melo var. makuwa] >TYK11480.1 bin... [more]
BLAST of CsaV3_3G001480 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G001480 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1T51.5e-59100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G008900 PE=4 SV=1[more]
A0A5A7UH688.7e-0790.91Binding partner of ACD11 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
BLAST of CsaV3_3G001480 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..51

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G001480.1CsaV3_3G001480.1mRNA