CsaV3_3G000620 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G000620
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	SKP1-like protein
Location	chr3: 529975 .. 531728 (-)
RNA-Seq Expression	CsaV3_3G000620
Synteny	CsaV3_3G000620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTCCTCCAACAAAATCACTCTCAAGAGCTCCGATGGCGACTATTTCCAAGTCGACGATGCCGTTGCCCTCCAATCTCAGACCATCCGCCATATGATCGAAGACAACTGCGCCCATAACGGCATCCCTCTTCCCAACGTCAACAGTAAAATTCTCGCCAAAGTCATCCAGTACTGCCGTAAACACGTTGATGCTTCCTCCGCCGATCCCCTCCCCTCCGAAGACGATCTCAAGACCTGGGATCGTGACTTTGTTAATGTCGATCAGGCTACTCTTTTCGATCTCATTCTGGTACTTCCTTTTTCTTCACTCCTCAGATACAATTGCTTTCAACGTTGGTCTCAAAGGGAAAGTTCTACTGGAAATTGTTTTGTATATTGAAGTTATCCGTTTTCGATCAATGGGTATGGTGTCTCCCATAGATTAATGAAATCTTGTTTCTTGTATAGTATCTTTATATAGTGTTGAATTAATGATAACCATGGTCATGTCTATTGCGAATTCATTTTTCTCTACCCCACCCCCACCGCCATATTCATAAAAAGTGTGAGAAAAATGAAGATCAGGATAATGATCTCTAATGTGATACTATATAAAAAGGAGACAGAAATACGCTGAGACGTAAGAAGAAAACTAGATTTCATTTGTTTGTGAAGATGGGTCATTAATCATTTACATGGCCGAGAATGGGTCTTCTGTAGAAAAAACTTCAAAAAATTTATTATGACAGGTTTAATGCTTTTGCCATTCTCCCTAAGATTGATACTAATGAACGTCTGTCTCCGGCTAATCCTCCACAAGATAGGAGTGCAAAACTAATTGCTAAAAGGACTCCAATCCAAAAGAACGAGAACAGTATCATATTACACGACAGTCTAGTGACCTACTACCAAACAGAAGCATTAAACCTCACCAACTCTCAAACCTCCTCTCTAGACTTCTTCACATCCCTAAGAATTTTACTATTACACTCCAACCAAATACCCCAAAAAATTCCAAAGGAAATTCGTGGATTTACACTCCACAACAAATGATCTAGATCCTCTTGATGCTCATGGCGAGCACCATTGCGGACCCAAGAATTAACTCTCTCGCCAAGCATTAACCTTTTTTTGGAACTTCTGTCTTCCACAGAGATTAGGCGACTCAAAGCCTTGGGAGCACTCGATTGAGCAGGGAAAGTGGATGAAAGGTTAAAATAGGAATGACAAGAAAGCCCCCTAGCAGGGTTAGGGAACCACCTCCTGACATCCTTTCCCCTATGAACAGTAAGACAATCTCAAGGATAAGAAGGAGATCCTTAGGAATTGAATAATGTCTAGGAGATGACAACACCGAGGTGACAGGATTTATTCATTGTCAAATGAAATGATTGTGGCTTAGTTTAACGTTGATAAACTTGATTTGTTGTCCATATGTCAACAGCTATGATTTATCATGCTCTACATTTATGCTGTGTTCTTGTTGCATAGAGTTTCAAGCTGCCTGGGGAATTTTTTTACTATTATTATTGTTGATCATAGTCTTTTCTTGATTTGGCGCCGTGTTAAAATTCTCTCGTTTATTCTACAATGCAGGCTGCAAATTATCTGGACGTCAAGAGCTTGTTAGACCTGACATGTCAGACTGTAGCTGACATGATCAAGGGAAAGAAGCCGGAGGAGATTCGAAAAACCTTCAACATCAAGAACGACTTCACACCAGCGGAAGAGGAGGAAGTTCGCAGGGAGAATCAGTGGGCTTGTGAATGA

mRNA sequence

ATGTCCTCCTCCAACAAAATCACTCTCAAGAGCTCCGATGGCGACTATTTCCAAGTCGACGATGCCGTTGCCCTCCAATCTCAGACCATCCGCCATATGATCGAAGACAACTGCGCCCATAACGGCATCCCTCTTCCCAACGTCAACAGTAAAATTCTCGCCAAAGTCATCCAGTACTGCCGTAAACACGTTGATGCTTCCTCCGCCGATCCCCTCCCCTCCGAAGACGATCTCAAGACCTGGGATCGTGACTTTGTTAATGTCGATCAGGCTACTCTTTTCGATCTCATTCTGGCTGCAAATTATCTGGACGTCAAGAGCTTGTTAGACCTGACATGTCAGACTGTAGCTGACATGATCAAGGGAAAGAAGCCGGAGGAGATTCGAAAAACCTTCAACATCAAGAACGACTTCACACCAGCGGAAGAGGAGGAAGTTCGCAGGGAGAATCAGTGGGCTTGTGAATGA

Coding sequence (CDS)

ATGTCCTCCTCCAACAAAATCACTCTCAAGAGCTCCGATGGCGACTATTTCCAAGTCGACGATGCCGTTGCCCTCCAATCTCAGACCATCCGCCATATGATCGAAGACAACTGCGCCCATAACGGCATCCCTCTTCCCAACGTCAACAGTAAAATTCTCGCCAAAGTCATCCAGTACTGCCGTAAACACGTTGATGCTTCCTCCGCCGATCCCCTCCCCTCCGAAGACGATCTCAAGACCTGGGATCGTGACTTTGTTAATGTCGATCAGGCTACTCTTTTCGATCTCATTCTGGCTGCAAATTATCTGGACGTCAAGAGCTTGTTAGACCTGACATGTCAGACTGTAGCTGACATGATCAAGGGAAAGAAGCCGGAGGAGATTCGAAAAACCTTCAACATCAAGAACGACTTCACACCAGCGGAAGAGGAGGAAGTTCGCAGGGAGAATCAGTGGGCTTGTGAATGA

Protein sequence

MSSSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYCRKHVDASSADPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMIKGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE*

Homology

[Close]

BLAST of CsaV3_3G000620 vs. NCBI nr
Match: XP_004146156.1 (SKP1-like protein 1 [Cucumis sativus] >KGN55643.1 hypothetical protein Csa_010015 [Cucumis sativus])

HSP 1 Score: 315.1 bits (806), Expect = 3.4e-82
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MSSSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYC 60
           MSSSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYC
Sbjct: 1   MSSSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYC 60

Query: 61  RKHVDASSADPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMI 120
           RKHVDASSADPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMI
Sbjct: 61  RKHVDASSADPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMI 120

Query: 121 KGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           KGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE
Sbjct: 121 KGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 155

[Close]

BLAST of CsaV3_3G000620 vs. NCBI nr
Match: XP_008448523.1 (PREDICTED: SKP1-like protein 1B [Cucumis melo])

HSP 1 Score: 285.0 bits (728), Expect = 3.8e-73
Identity = 141/155 (90.97%), Postives = 146/155 (94.19%), Query Frame = 0


Query: 1   MSSSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYC 60
           MSSS KITLKSSDGDYF+VD AVALQSQTIRHMIED+CA NGIPLPNVNSKILAKVI+YC
Sbjct: 1   MSSSKKITLKSSDGDYFEVDGAVALQSQTIRHMIEDSCADNGIPLPNVNSKILAKVIEYC 60

Query: 61  RKHVDASSADPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMI 120
           RKHV+ASS DP PS DDLKTWDRDFVNVDQATLFDLILAANYLD+KSLLDLTCQTVADMI
Sbjct: 61  RKHVNASSLDPAPSVDDLKTWDRDFVNVDQATLFDLILAANYLDIKSLLDLTCQTVADMI 120

Query: 121 KGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           KGK PEEIRKTFNIKNDFTP EEEEVRRENQWA E
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CsaV3_3G000620 vs. NCBI nr
Match: XP_038903121.1 (SKP1-like protein 1A [Benincasa hispida])

HSP 1 Score: 275.8 bits (704), Expect = 2.3e-70
Identity = 137/155 (88.39%), Postives = 144/155 (92.90%), Query Frame = 0


Query: 1   MSSSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYC 60
           MSSS KITLKSSDGD F+VD+AVALQSQTIRHMIED+CA NGIPLPNV S ILAKVI+YC
Sbjct: 1   MSSSKKITLKSSDGDSFEVDEAVALQSQTIRHMIEDDCADNGIPLPNVTSNILAKVIEYC 60

Query: 61  RKHVDASSADPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMI 120
           RKHVDASSADP  S+DDLK WDRDFVNVDQATLFDLILAANYL++KSLLDLTCQTVADMI
Sbjct: 61  RKHVDASSADPRLSDDDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           KGK PEEIRKTFNIKNDFTP EEEEVRRENQWA E
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CsaV3_3G000620 vs. NCBI nr
Match: XP_022965297.1 (SKP1-like protein 1A [Cucurbita maxima] >KAG6577790.1 SKP1-like protein 1A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015829.1 SKP1-like protein 1A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 271.2 bits (692), Expect = 5.7e-69
Identity = 133/155 (85.81%), Postives = 143/155 (92.26%), Query Frame = 0


Query: 1   MSSSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYC 60
           MSSS KITLKSSDG+ F++D+ VAL+SQTIRHMIED+CA NGIPLPNV SKILAKVI+YC
Sbjct: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60

Query: 61  RKHVDASSADPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMI 120
            KHVDASSADP  SE+DLK WDRDFVNVDQATLFDLILAANYL++KSLLDLTCQTVADMI
Sbjct: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           KGK PEEIRKTFNIKNDFTP EEEEVRRENQWA E
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CsaV3_3G000620 vs. NCBI nr
Match: XP_022923340.1 (SKP1-like protein 1A [Cucurbita moschata])

HSP 1 Score: 269.6 bits (688), Expect = 1.7e-68
Identity = 132/155 (85.16%), Postives = 142/155 (91.61%), Query Frame = 0


Query: 1   MSSSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYC 60
           MSSS KITLKSSDG+ F++D+ VAL+SQTIRHMIED+CA NGIPLPNV SKIL KVI+YC
Sbjct: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILVKVIEYC 60

Query: 61  RKHVDASSADPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMI 120
            KHVDASSADP  SE+DLK WDRDFVNVDQATLFDLILAANYL++KSLLDLTCQTVADMI
Sbjct: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           KGK PEEIRKTFNIKNDFTP EEEEVRRENQWA E
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CsaV3_3G000620 vs. ExPASy Swiss-Prot
Match: Q6PL11 (SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.4e-62
Identity = 120/164 (73.17%), Postives = 135/164 (82.32%), Query Frame = 0


Query: 7   ITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYCRKHV-- 66
           ITLKSSDG+ F+V++AVA++SQTIRHMIED+CA NGIPLPNVNSKIL+KVI+YC KHV  
Sbjct: 10  ITLKSSDGEEFEVEEAVAMESQTIRHMIEDDCADNGIPLPNVNSKILSKVIEYCNKHVHA 69

Query: 67  -------------DASSADPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDL 126
                         A++A P PS +DLK WD DFV VDQATLFDLILAANYL++K LLDL
Sbjct: 70  AAAAASKAADDAASAAAAVPPPSGEDLKNWDADFVKVDQATLFDLILAANYLNIKGLLDL 129

Query: 127 TCQTVADMIKGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           TCQTVADMIKGK PEEIRKTFNIKNDFTP EEEE+RRENQWA E
Sbjct: 130 TCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEIRRENQWAFE 173

[Close]

BLAST of CsaV3_3G000620 vs. ExPASy Swiss-Prot
Match: Q9FHW7 (SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 4.5e-61
Identity = 118/171 (69.01%), Postives = 139/171 (81.29%), Query Frame = 0


Query: 1   MSSSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYC 60
           MS+  KITLKSSDG+ F++D+AVAL+SQTI+HMIED+C  NGIPLPNV SKIL+KVI+YC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  RKHVDA-----SSADPL-----------PSEDDLKTWDRDFVNVDQATLFDLILAANYLD 120
           ++HV+A     ++AD              S++DLKTWD +F+ VDQ TLFDLILAANYL+
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 VKSLLDLTCQTVADMIKGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           +K LLDLTCQTVADMIKGK PEEIRKTFNIKNDFTP EEEEVRRENQWA E
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of CsaV3_3G000620 vs. ExPASy Swiss-Prot
Match: Q39255 (SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.9e-60
Identity = 112/159 (70.44%), Postives = 135/159 (84.91%), Query Frame = 0


Query: 3   SSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYCRK 62
           S+ KI LKSSDG+ F+V++AVAL+SQTI HM+ED+C  NG+PLPNV SKILAKVI+YC++
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVDASSA------DPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTV 122
           HV+A+++          S+DDLK WD DF+ +DQATLF+LILAANYL++K+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           ADMIKGK PEEIR TFNIKNDFTP EEEEVRRENQWA E
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of CsaV3_3G000620 vs. ExPASy Swiss-Prot
Match: Q651E8 (SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.5e-56
Identity = 114/165 (69.09%), Postives = 134/165 (81.21%), Query Frame = 0


Query: 7   ITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYCRKHVD- 66
           ITL+S +G  F+V +AVA++SQTIRHMIED CA  GIPLPNV++KIL+KVI+YC KHV+ 
Sbjct: 11  ITLRSCEGQVFEVAEAVAMESQTIRHMIEDKCADTGIPLPNVSAKILSKVIEYCSKHVEA 70

Query: 67  ----ASSAD---PLPS--------EDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLD 126
               A++AD   P P+        ED+LKT+D +FV VDQ+TLFDLILAANYL++K LLD
Sbjct: 71  RGGAAAAADGDAPAPAAVEANKAVEDELKTFDAEFVKVDQSTLFDLILAANYLNIKGLLD 130

Query: 127 LTCQTVADMIKGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           LTCQTVADMIKGK PEEIRKTFNIKNDFTP EEEEVRRENQWA E
Sbjct: 131 LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 175

[Close]

BLAST of CsaV3_3G000620 vs. ExPASy Swiss-Prot
Match: O49484 (SKP1-like protein 11 OS=Arabidopsis thaliana OX=3702 GN=ASK11 PE=1 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.0e-53
Identity = 103/153 (67.32%), Postives = 126/153 (82.35%), Query Frame = 0


Query: 3   SSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYCRK 62
           SS  I L SSDG  F+V++AVA+QSQTI HM+ED+C  +GIPL NV SKIL KVI+YC+K
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  HVDASSADPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMIKG 122
           H     A+P+ SE+DL  WD  F++++Q+T+F+LILAANYL++KSLLDLTCQTVADMIKG
Sbjct: 62  H-HVDEANPI-SEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKG 121

Query: 123 KKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           K PEEIR TFNI+NDFTP EEE VR+ENQWA E
Sbjct: 122 KTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of CsaV3_3G000620 vs. ExPASy TrEMBL
Match: A0A0A0L1L3 (SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_3G002630 PE=3 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 1.7e-82
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MSSSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYC 60
           MSSSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYC
Sbjct: 1   MSSSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYC 60

Query: 61  RKHVDASSADPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMI 120
           RKHVDASSADPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMI
Sbjct: 61  RKHVDASSADPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMI 120

Query: 121 KGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           KGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE
Sbjct: 121 KGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 155

[Close]

BLAST of CsaV3_3G000620 vs. ExPASy TrEMBL
Match: A0A1S3BJV5 (SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103490674 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.8e-73
Identity = 141/155 (90.97%), Postives = 146/155 (94.19%), Query Frame = 0


Query: 1   MSSSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYC 60
           MSSS KITLKSSDGDYF+VD AVALQSQTIRHMIED+CA NGIPLPNVNSKILAKVI+YC
Sbjct: 1   MSSSKKITLKSSDGDYFEVDGAVALQSQTIRHMIEDSCADNGIPLPNVNSKILAKVIEYC 60

Query: 61  RKHVDASSADPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMI 120
           RKHV+ASS DP PS DDLKTWDRDFVNVDQATLFDLILAANYLD+KSLLDLTCQTVADMI
Sbjct: 61  RKHVNASSLDPAPSVDDLKTWDRDFVNVDQATLFDLILAANYLDIKSLLDLTCQTVADMI 120

Query: 121 KGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           KGK PEEIRKTFNIKNDFTP EEEEVRRENQWA E
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CsaV3_3G000620 vs. ExPASy TrEMBL
Match: A0A6J1HJY3 (SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111465205 PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 2.8e-69
Identity = 133/155 (85.81%), Postives = 143/155 (92.26%), Query Frame = 0


Query: 1   MSSSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYC 60
           MSSS KITLKSSDG+ F++D+ VAL+SQTIRHMIED+CA NGIPLPNV SKILAKVI+YC
Sbjct: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60

Query: 61  RKHVDASSADPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMI 120
            KHVDASSADP  SE+DLK WDRDFVNVDQATLFDLILAANYL++KSLLDLTCQTVADMI
Sbjct: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           KGK PEEIRKTFNIKNDFTP EEEEVRRENQWA E
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CsaV3_3G000620 vs. ExPASy TrEMBL
Match: A0A6J1EBI5 (SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111431062 PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 8.0e-69
Identity = 132/155 (85.16%), Postives = 142/155 (91.61%), Query Frame = 0


Query: 1   MSSSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYC 60
           MSSS KITLKSSDG+ F++D+ VAL+SQTIRHMIED+CA NGIPLPNV SKIL KVI+YC
Sbjct: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILVKVIEYC 60

Query: 61  RKHVDASSADPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMI 120
            KHVDASSADP  SE+DLK WDRDFVNVDQATLFDLILAANYL++KSLLDLTCQTVADMI
Sbjct: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           KGK PEEIRKTFNIKNDFTP EEEEVRRENQWA E
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CsaV3_3G000620 vs. ExPASy TrEMBL
Match: A0A5A7UGS7 (SKP1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold344G00530 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.8e-68
Identity = 131/145 (90.34%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 11  SSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYCRKHVDASSAD 70
           +SDGDYF+VD AVALQSQTIRHMIED+CA NGIPLPNVNSKILAKVI+YCRKHV+ASS D
Sbjct: 14  TSDGDYFEVDGAVALQSQTIRHMIEDSCADNGIPLPNVNSKILAKVIEYCRKHVNASSLD 73

Query: 71  PLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMIKGKKPEEIRK 130
           P PS DDLKTWDRDFVNVDQATLFDLILAANYLD+KSLLDLTCQTVADMIKGK PEEIRK
Sbjct: 74  PAPSVDDLKTWDRDFVNVDQATLFDLILAANYLDIKSLLDLTCQTVADMIKGKTPEEIRK 133

Query: 131 TFNIKNDFTPAEEEEVRRENQWACE 156
           TFNIKNDFTP EEEEVRRENQWA E
Sbjct: 134 TFNIKNDFTPEEEEEVRRENQWAFE 158

[Close]

BLAST of CsaV3_3G000620 vs. TAIR 10
Match: AT5G42190.1 (E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein )

HSP 1 Score: 235.3 bits (599), Expect = 3.2e-62
Identity = 118/171 (69.01%), Postives = 139/171 (81.29%), Query Frame = 0


Query: 1   MSSSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYC 60
           MS+  KITLKSSDG+ F++D+AVAL+SQTI+HMIED+C  NGIPLPNV SKIL+KVI+YC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  RKHVDA-----SSADPL-----------PSEDDLKTWDRDFVNVDQATLFDLILAANYLD 120
           ++HV+A     ++AD              S++DLKTWD +F+ VDQ TLFDLILAANYL+
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 VKSLLDLTCQTVADMIKGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           +K LLDLTCQTVADMIKGK PEEIRKTFNIKNDFTP EEEEVRRENQWA E
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of CsaV3_3G000620 vs. TAIR 10
Match: AT1G75950.1 (S phase kinase-associated protein 1 )

HSP 1 Score: 232.6 bits (592), Expect = 2.1e-61
Identity = 112/159 (70.44%), Postives = 135/159 (84.91%), Query Frame = 0


Query: 3   SSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYCRK 62
           S+ KI LKSSDG+ F+V++AVAL+SQTI HM+ED+C  NG+PLPNV SKILAKVI+YC++
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVDASSA------DPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTV 122
           HV+A+++          S+DDLK WD DF+ +DQATLF+LILAANYL++K+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           ADMIKGK PEEIR TFNIKNDFTP EEEEVRRENQWA E
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of CsaV3_3G000620 vs. TAIR 10
Match: AT4G34210.1 (SKP1-like 11 )

HSP 1 Score: 209.9 bits (533), Expect = 1.5e-54
Identity = 103/153 (67.32%), Postives = 126/153 (82.35%), Query Frame = 0


Query: 3   SSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYCRK 62
           SS  I L SSDG  F+V++AVA+QSQTI HM+ED+C  +GIPL NV SKIL KVI+YC+K
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  HVDASSADPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMIKG 122
           H     A+P+ SE+DL  WD  F++++Q+T+F+LILAANYL++KSLLDLTCQTVADMIKG
Sbjct: 62  H-HVDEANPI-SEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKG 121

Query: 123 KKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           K PEEIR TFNI+NDFTP EEE VR+ENQWA E
Sbjct: 122 KTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of CsaV3_3G000620 vs. TAIR 10
Match: AT4G34470.1 (SKP1-like 12 )

HSP 1 Score: 207.6 bits (527), Expect = 7.2e-54
Identity = 104/154 (67.53%), Postives = 127/154 (82.47%), Query Frame = 0


Query: 3   SSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYCRK 62
           SS  I L SSDG  F+V++AVA+QSQTI HM+ED+C  +GIPL NV SKIL KVI+YC+K
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  -HVDASSADPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMIK 122
            HVD   A+P+ SE+DL  WD  F++++Q+T+F+LILAANYL++KSL DLTCQTVADMIK
Sbjct: 62  YHVD--EANPI-SEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIK 121

Query: 123 GKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           GK PEEIR TFNI+NDFTP EEE VR+ENQWA E
Sbjct: 122 GKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of CsaV3_3G000620 vs. TAIR 10
Match: AT1G20140.1 (SKP1-like 4 )

HSP 1 Score: 198.4 bits (503), Expect = 4.4e-51
Identity = 96/156 (61.54%), Postives = 121/156 (77.56%), Query Frame = 0


Query: 7   ITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYCRKHVDA 66
           I LKSSDG+ F++++AVA++SQTI+HMIED+CA NGIPLPNV   ILAKVI+YC+KHV+A
Sbjct: 8   IILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKKHVEA 67

Query: 67  SSAD-------PLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADM 126
           ++              D+LK WD +FV VDQ TLFDLILAANYL++  LLDLTC+ VAD 
Sbjct: 68  AAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAVADQ 127

Query: 127 IKGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           ++GK PE++R  FNIKND+TP EE EVR EN+WA E
Sbjct: 128 MRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

The following BLAST results are available for this feature:

BLAST of CsaV3_3G000620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146156.1	3.4e-82	100.00	SKP1-like protein 1 [Cucumis sativus] >KGN55643.1 hypothetical protein Csa_01001...	[more]
XP_008448523.1	3.8e-73	90.97	PREDICTED: SKP1-like protein 1B [Cucumis melo]	[more]
XP_038903121.1	2.3e-70	88.39	SKP1-like protein 1A [Benincasa hispida]	[more]
XP_022965297.1	5.7e-69	85.81	SKP1-like protein 1A [Cucurbita maxima] >KAG6577790.1 SKP1-like protein 1A, part...	[more]
XP_022923340.1	1.7e-68	85.16	SKP1-like protein 1A [Cucurbita moschata]	[more]

BLAST of CsaV3_3G000620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6PL11	2.4e-62	73.17	SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1	[more]
Q9FHW7	4.5e-61	69.01	SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1	[more]
Q39255	2.9e-60	70.44	SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1	[more]
Q651E8	1.5e-56	69.09	SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1	[more]
O49484	2.0e-53	67.32	SKP1-like protein 11 OS=Arabidopsis thaliana OX=3702 GN=ASK11 PE=1 SV=1	[more]

BLAST of CsaV3_3G000620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1L3	1.7e-82	100.00	SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_3G002630 PE=3 SV=1	[more]
A0A1S3BJV5	1.8e-73	90.97	SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103490674 PE=3 SV=1	[more]
A0A6J1HJY3	2.8e-69	85.81	SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111465205 PE=3 SV=1	[more]
A0A6J1EBI5	8.0e-69	85.16	SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111431062 PE=3 SV=1	[more]
A0A5A7UGS7	1.8e-68	90.34	SKP1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold344G00...	[more]

BLAST of CsaV3_3G000620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42190.1	3.2e-62	69.01	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	[more]
AT1G75950.1	2.1e-61	70.44	S phase kinase-associated protein 1	[more]
AT4G34210.1	1.5e-54	67.32	SKP1-like 11	[more]
AT4G34470.1	7.2e-54	67.53	SKP1-like 12	[more]
AT1G20140.1	4.4e-51	61.54	SKP1-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 4..105 e-value: 5.3E-50 score: 182.1
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 5..64 e-value: 3.2E-27 score: 94.5
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 106..153 e-value: 1.7E-28 score: 98.3
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 1..155 e-value: 2.6E-71 score: 241.0
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 6..65
IPR016897	S-phase kinase-associated protein 1	PIRSF	PIRSF028729	SCF_Skp	coord: 1..155 e-value: 2.8E-65 score: 217.1
IPR016897	S-phase kinase-associated protein 1	PANTHER	PTHR11165	SKP1	coord: 1..154
None	No IPR available	PANTHER	PTHR11165:SF145	PUTATIVE-RELATED	coord: 1..154
None	No IPR available	CDD	cd18322	BTB_POZ_SKP1	coord: 6..120 e-value: 1.38748E-58 score: 176.243
IPR036296	SKP1-like, dimerisation domain superfamily	SUPERFAMILY	81382	Skp1 dimerisation domain-like	coord: 78..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G000620.1	CsaV3_3G000620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process