CsaV3_3G000020 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G000020
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Retrotransposon protein
Location	chr3: 163357 .. 163796 (-)
RNA-Seq Expression	CsaV3_3G000020
Synteny	CsaV3_3G000020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTAGTCTATGTGTTCCGCAACTAGACTTTAAAAACCGCGTTAGCAAAATTATGGTTGGTAGATGTGAAGATTTTTTATACAAATACAAAGACTACAATTAGGTTAATCAATTTTGTTTTTAACTTAAGATTTTTTTTCAACAGAGTTTCAATATAGAATTTGTAAAAGACAAACAAGAATTTCAGTCCACTCTTACCGCGTCGGGTCCAATGTGCTTGGTGGGTACGAGGGATTTGCATCTGATGATGGCAACGATATGGAGTTTCCCACAATGTACAGTCAAAGACTAGACATATCACCTGACGAAATAATGGAGACACGATCCCGTGCAGGTGACAGAAGGAATGCTTCTAGCAAATCAAAGAGGAAATGGAGAGGACAGTCGATAGAAACTGCACACATACTTCGCAATGTCATTGAGTACGATAATGAGTAG

mRNA sequence

ATGTTTAGTCTATGTGTTCCGCAACTAGACTTTAAAAACCGCGTTAGCAAAATTATGGTTGAGTTTCAATATAGAATTTGTAAAAGACAAACAAGAATTTCAGTCCACTCTTACCGCGTCGGGTCCAATGTGCTTGGTGGGTACGAGGGATTTGCATCTGATGATGGCAACGATATGGAGTTTCCCACAATGTACAGTCAAAGACTAGACATATCACCTGACGAAATAATGGAGACACGATCCCGTGCAGGTGACAGAAGGAATGCTTCTAGCAAATCAAAGAGGAAATGGAGAGGACAGTCGATAGAAACTGCACACATACTTCGCAATGTCATTGAGTACGATAATGAGTAG

Coding sequence (CDS)

ATGTTTAGTCTATGTGTTCCGCAACTAGACTTTAAAAACCGCGTTAGCAAAATTATGGTTGAGTTTCAATATAGAATTTGTAAAAGACAAACAAGAATTTCAGTCCACTCTTACCGCGTCGGGTCCAATGTGCTTGGTGGGTACGAGGGATTTGCATCTGATGATGGCAACGATATGGAGTTTCCCACAATGTACAGTCAAAGACTAGACATATCACCTGACGAAATAATGGAGACACGATCCCGTGCAGGTGACAGAAGGAATGCTTCTAGCAAATCAAAGAGGAAATGGAGAGGACAGTCGATAGAAACTGCACACATACTTCGCAATGTCATTGAGTACGATAATGAGTAG

Protein sequence

MFSLCVPQLDFKNRVSKIMVEFQYRICKRQTRISVHSYRVGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETRSRAGDRRNASSKSKRKWRGQSIETAHILRNVIEYDNE*

Homology

[Close]

BLAST of CsaV3_3G000020 vs. NCBI nr
Match: KGN55579.1 (hypothetical protein Csa_010509 [Cucumis sativus])

HSP 1 Score: 236.9 bits (603), Expect = 9.0e-59
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MFSLCVPQLDFKNRVSKIMVEFQYRICKRQTRISVHSYRVGSNVLGGYEGFASDDGNDME 60
           MFSLCVPQLDFKNRVSKIMVEFQYRICKRQTRISVHSYRVGSNVLGGYEGFASDDGNDME
Sbjct: 1   MFSLCVPQLDFKNRVSKIMVEFQYRICKRQTRISVHSYRVGSNVLGGYEGFASDDGNDME 60

Query: 61  FPTMYSQRLDISPDEIMETRSRAGDRRNASSKSKRKWRGQSIETAHILRNVIEYDNE 118
           FPTMYSQRLDISPDEIMETRSRAGDRRNASSKSKRKWRGQSIETAHILRNVIEYDNE
Sbjct: 61  FPTMYSQRLDISPDEIMETRSRAGDRRNASSKSKRKWRGQSIETAHILRNVIEYDNE 117

[Close]

BLAST of CsaV3_3G000020 vs. NCBI nr
Match: KAA0056167.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 7.0e-19
Identity = 52/79 (65.82%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 40  VGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETRSR-AGDRRNASSKSKRKWR 99
           VGSNV+GGYEGF  +DGND+E P+MYSQ LD+S D+IM TR R A D RNASS+SKRKW 
Sbjct: 281 VGSNVIGGYEGFIGNDGNDIEIPSMYSQGLDMSSDDIMGTRPRQASDGRNASSRSKRKWV 340

Query: 100 GQSIETAHILRNVIEYDNE 118
           GQ++ET  I+ N IEY N+
Sbjct: 341 GQTVETVKIIYNSIEYTND 359

[Close]

BLAST of CsaV3_3G000020 vs. NCBI nr
Match: KAA0051823.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK21421.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 6.8e-14
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 40  VGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETR-SRAGDRRNASSKSKRKWR 99
           VGSNV   Y  FA+   NDM+F T+YSQRLD+SP+E+M TR + A D  N SS SK KW 
Sbjct: 231 VGSNVSNRYARFAAFAANDMKFHTIYSQRLDMSPNEVMSTRTTHASDHSNVSSGSKWKWG 290

Query: 100 GQSIETAHILRNVIEYDNE 118
           GQ++E+  I+RNVIEYD E
Sbjct: 291 GQTLESGDIIRNVIEYDKE 309

[Close]

BLAST of CsaV3_3G000020 vs. NCBI nr
Match: KAA0060529.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 8.8e-14
Identity = 45/79 (56.96%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 40  VGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETR-SRAGDRRNASSKSKRKWR 99
           VGSN   GYEGF++DDGNDME P MYSQ +D+  D+IM TR  R+ + R  SS SKRK  
Sbjct: 11  VGSNFPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQG 70

Query: 100 GQSIETAHILRNVIEYDNE 118
           GQ++ET  I+RNV+E+ N+
Sbjct: 71  GQAVETMEIIRNVMEHSND 89

[Close]

BLAST of CsaV3_3G000020 vs. NCBI nr
Match: TYK11084.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-13
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 40  VGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETRSR-AGDRRNASSKSKRKWR 99
           VGSNV+GGYEGF  +DGND+E P+MYSQ LD+S D+IM TR R A D RNASS+SKRKW 
Sbjct: 286 VGSNVIGGYEGFIGNDGNDIEIPSMYSQGLDMSSDDIMGTRPRQASDGRNASSRSKRKWV 345

Query: 100 GQS 102
           GQ+
Sbjct: 346 GQT 348

[Close]

BLAST of CsaV3_3G000020 vs. ExPASy TrEMBL
Match: A0A0A0L3I2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000030 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.4e-59
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MFSLCVPQLDFKNRVSKIMVEFQYRICKRQTRISVHSYRVGSNVLGGYEGFASDDGNDME 60
           MFSLCVPQLDFKNRVSKIMVEFQYRICKRQTRISVHSYRVGSNVLGGYEGFASDDGNDME
Sbjct: 1   MFSLCVPQLDFKNRVSKIMVEFQYRICKRQTRISVHSYRVGSNVLGGYEGFASDDGNDME 60

Query: 61  FPTMYSQRLDISPDEIMETRSRAGDRRNASSKSKRKWRGQSIETAHILRNVIEYDNE 118
           FPTMYSQRLDISPDEIMETRSRAGDRRNASSKSKRKWRGQSIETAHILRNVIEYDNE
Sbjct: 61  FPTMYSQRLDISPDEIMETRSRAGDRRNASSKSKRKWRGQSIETAHILRNVIEYDNE 117

[Close]

BLAST of CsaV3_3G000020 vs. ExPASy TrEMBL
Match: A0A5A7UNI7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00630 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 3.4e-19
Identity = 52/79 (65.82%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 40  VGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETRSR-AGDRRNASSKSKRKWR 99
           VGSNV+GGYEGF  +DGND+E P+MYSQ LD+S D+IM TR R A D RNASS+SKRKW 
Sbjct: 281 VGSNVIGGYEGFIGNDGNDIEIPSMYSQGLDMSSDDIMGTRPRQASDGRNASSRSKRKWV 340

Query: 100 GQSIETAHILRNVIEYDNE 118
           GQ++ET  I+ N IEY N+
Sbjct: 341 GQTVETVKIIYNSIEYTND 359

[Close]

BLAST of CsaV3_3G000020 vs. ExPASy TrEMBL
Match: A0A5A7U7C9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00780 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.3e-14
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 40  VGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETR-SRAGDRRNASSKSKRKWR 99
           VGSNV   Y  FA+   NDM+F T+YSQRLD+SP+E+M TR + A D  N SS SK KW 
Sbjct: 231 VGSNVSNRYARFAAFAANDMKFHTIYSQRLDMSPNEVMSTRTTHASDHSNVSSGSKWKWG 290

Query: 100 GQSIETAHILRNVIEYDNE 118
           GQ++E+  I+RNVIEYD E
Sbjct: 291 GQTLESGDIIRNVIEYDKE 309

[Close]

BLAST of CsaV3_3G000020 vs. ExPASy TrEMBL
Match: A0A5A7V469 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00340 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.3e-14
Identity = 45/79 (56.96%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 40  VGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETR-SRAGDRRNASSKSKRKWR 99
           VGSN   GYEGF++DDGNDME P MYSQ +D+  D+IM TR  R+ + R  SS SKRK  
Sbjct: 11  VGSNFPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQG 70

Query: 100 GQSIETAHILRNVIEYDNE 118
           GQ++ET  I+RNV+E+ N+
Sbjct: 71  GQAVETMEIIRNVMEHSND 89

[Close]

BLAST of CsaV3_3G000020 vs. ExPASy TrEMBL
Match: A0A5D3CIS8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00710 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 9.5e-14
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 40  VGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETRSR-AGDRRNASSKSKRKWR 99
           VGSNV+GGYEGF  +DGND+E P+MYSQ LD+S D+IM TR R A D RNASS+SKRKW 
Sbjct: 286 VGSNVIGGYEGFIGNDGNDIEIPSMYSQGLDMSSDDIMGTRPRQASDGRNASSRSKRKWV 345

Query: 100 GQS 102
           GQ+
Sbjct: 346 GQT 348

The following BLAST results are available for this feature:

BLAST of CsaV3_3G000020 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55579.1	9.0e-59	100.00	hypothetical protein Csa_010509 [Cucumis sativus]	[more]
KAA0056167.1	7.0e-19	65.82	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051823.1	6.8e-14	58.23	retrotransposon protein [Cucumis melo var. makuwa] >TYK21421.1 retrotransposon p...	[more]
KAA0060529.1	8.8e-14	56.96	retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon p...	[more]
TYK11084.1	2.0e-13	69.84	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_3G000020 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G000020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3I2	4.4e-59	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000030 PE=4 SV=1	[more]
A0A5A7UNI7	3.4e-19	65.82	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U7C9	3.3e-14	58.23	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V469	4.3e-14	56.96	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CIS8	9.5e-14	69.84	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsaV3_3G000020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G000020.1	CsaV3_3G000020.1	mRNA