CsaV3_2G036600 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G036600
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Polyprotein
Location	chr2: 24717337 .. 24718803 (-)
RNA-Seq Expression	CsaV3_2G036600
Synteny	CsaV3_2G036600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAATGTTAATTCAGGCTCGTCCACAGCTGATGATTTTGCTCGAAGAATAGAGGCATCATTGAGGGCTGCAATAAGTCAGCATGAAGCAGCAATACAGTCTCTTCCAGCACCGGTAAGACAAGAAGTCGAGACTGCAGCAACAGAGCAGGCAGAAAACTCGGTGGGGGCAATTGTTCGATTAAGGAACGAGGAACGTGGGAAAGGTACAGCAGCTGATACTTCTGTCAAACCTCAAGCGTCCCAAAAAGCTCCACAAGTAGCTCCTGCAGTTATCAACCCTGTACCTGCCCCTATTGCTGCACAACCAGCAACTGTAGGGAATATAATTCCTAGAATCGTGGGACCTCTAGAAGCAGATGTAATAGGCATTAGGGGAATGCAACTAGTACATAGGGAAGAACTGCCGGACGTCGGATATCTCCACCCTGGATTTATAAGAGAGTTAGAGTGGAGTGACGGTATTTTAAGAGAAATGGGAGGACGACTGTCAATCCTTCCAGATGCGGATTTAAAAGAGCATGCAGAAAGACTGTGGAGAGGACTAACAGTACAATGTACAAATAGAGTCACCGGAATTGCAATGCTGTACATTAGCTTGGAACCTCCTTTCACCATTAAATCCGCAGGAAACCGTATATAATGCCATTGACTATTTTACAACCCCAAGAGACCAGCACGTCAACTCTCTTTCTGAACAAATTTTAGGCGTGGGGAATGCAAGAAATCCTGAACTATCTGATGTCCCACTGGCAGATCTTATTAAGAGTTCATGTTATATAGCAGCCAGTTTATTAAGGTTATTTACCTAAAAGACAGGTAGCTGGGAAAAAGCTTATGCAGGTGATCTGAAGGAGAATTATTTGAAGATTTACAAAGAGCAGTTTCCGATTGATGCTCCTGTGTTATCAAAGGCTTGCATTGATGGATTTGTCTGGGCATTTCAGAATGTCTCCATTTTGAAAGGAACATTGGGGAGGTTCTTATACAACTTTAGCAGCCTTGGAGACGGAAACGTGGGAAAGGGTTTGGCAACAATGTTATTTGAACAACATTTAGGGTTTACATGCATGCATTAAGTCTGTTCATTAGGGTAGCATCATCACTGAACCTTTCTCCAAAAGATCTAACTAAAGCCTGCTGGCATAAGCTGACAAAGATGCCTTTGAACTCATTGGTAACTATTTTGTCCAAAGTAACTGCAGAAAGTAATATTGCAGGGGCACCAAATGTAAGAGGGACCTGGAAATATGCAAGAGTTTTTGGCAGTGAATACTTTATCGGAATCCAATCTAAAAGGTGTCCCATCTTATTCTGTTTGTTAGCAATGATCTGTGAAAGAATTGGAGACATGGGGAATCAAGATCCACCGGAGACTAGAGCCATCTATAGAAGATGGGCAAATAGGATATGTGACTTCTATATGCCGACCTTGTTTTTTTCTTTTAAATTTGCTTATGATTGA

mRNA sequence

ATGGCAAATGTTAATTCAGGCTCGTCCACAGCTGATGATTTTGCTCGAAGAATAGAGGCATCATTGAGGGCTGCAATAAGTCAGCATGAAGCAGCAATACAGTCTCTTCCAGCACCGGTAAGACAAGAAGTCGAGACTGCAGCAACAGAGCAGGCAGAAAACTCGGTGGGGGCAATTGTTCGATTAAGGAACGAGGAACGTGGGAAAGGTACAGCAGCTGATACTTCTGTCAAACCTCAAGCGTCCCAAAAAGCTCCACAAGTAGCTCCTGCAGTTATCAACCCTGTACCTGCCCCTATTGCTGCACAACCAGCAACTGTAGGGAATATAATTCCTAGAATCGTGGGACCTCTAGAAGCAGATGTAATAGGCATTAGGGGAATGCAACTAGTACATAGGGAAGAACTGCCGGACGTCGGATATCTCCACCCTGGATTTATAAGAGAGTTAGAGTGGAGTGACGGTATTTTAAGAGAAATGGGAGGACGACTGTCAATCCTTCCAGATGCGGATTTAAAAGAGCATGCAGAAAGACTGTGGAGAGGACTAACAGTACAATGTACAAATAGAGTCACCGGAATTGCAATGCTGTACATTAGCTTGGAACCTCCTTTCACCATTAAATCCGCAGGAAACCGTAGCTGGGAAAAAGCTTATGCAGGTGATCTGAAGGAGAATTATTTGAAGATTTACAAAGAGCAGTTTCCGATTGATGCTCCTGTGTTATCAAAGGCTTGCATTGATGGATTTGTCTGGGCATTTCAGAATGTCTCCATTTTGAAAGGAACATTGGGGAGGGTAGCATCATCACTGAACCTTTCTCCAAAAGATCTAACTAAAGCCTGCTGGCATAAGCTGACAAAGATGCCTTTGAACTCATTGGTAACTATTTTGTCCAAAGTAACTGCAGAAAGTAATATTGCAGGGGCACCAAATGTAAGAGGGACCTGGAAATATGCAAGAGTTTTTGGCAGTGAATACTTTATCGGAATCCAATCTAAAAGGTGTCCCATCTTATTCTGTTTGTTAGCAATGATCTGTGAAAGAATTGGAGACATGGGGAATCAAGATCCACCGGAGACTAGAGCCATCTATAGAAGATGGGCAAATAGGATATGTGACTTCTATATGCCGACCTTGTTTTTTTCTTTTAAATTTGCTTATGATTGA

Coding sequence (CDS)

ATGGCAAATGTTAATTCAGGCTCGTCCACAGCTGATGATTTTGCTCGAAGAATAGAGGCATCATTGAGGGCTGCAATAAGTCAGCATGAAGCAGCAATACAGTCTCTTCCAGCACCGGTAAGACAAGAAGTCGAGACTGCAGCAACAGAGCAGGCAGAAAACTCGGTGGGGGCAATTGTTCGATTAAGGAACGAGGAACGTGGGAAAGGTACAGCAGCTGATACTTCTGTCAAACCTCAAGCGTCCCAAAAAGCTCCACAAGTAGCTCCTGCAGTTATCAACCCTGTACCTGCCCCTATTGCTGCACAACCAGCAACTGTAGGGAATATAATTCCTAGAATCGTGGGACCTCTAGAAGCAGATGTAATAGGCATTAGGGGAATGCAACTAGTACATAGGGAAGAACTGCCGGACGTCGGATATCTCCACCCTGGATTTATAAGAGAGTTAGAGTGGAGTGACGGTATTTTAAGAGAAATGGGAGGACGACTGTCAATCCTTCCAGATGCGGATTTAAAAGAGCATGCAGAAAGACTGTGGAGAGGACTAACAGTACAATGTACAAATAGAGTCACCGGAATTGCAATGCTGTACATTAGCTTGGAACCTCCTTTCACCATTAAATCCGCAGGAAACCGTAGCTGGGAAAAAGCTTATGCAGGTGATCTGAAGGAGAATTATTTGAAGATTTACAAAGAGCAGTTTCCGATTGATGCTCCTGTGTTATCAAAGGCTTGCATTGATGGATTTGTCTGGGCATTTCAGAATGTCTCCATTTTGAAAGGAACATTGGGGAGGGTAGCATCATCACTGAACCTTTCTCCAAAAGATCTAACTAAAGCCTGCTGGCATAAGCTGACAAAGATGCCTTTGAACTCATTGGTAACTATTTTGTCCAAAGTAACTGCAGAAAGTAATATTGCAGGGGCACCAAATGTAAGAGGGACCTGGAAATATGCAAGAGTTTTTGGCAGTGAATACTTTATCGGAATCCAATCTAAAAGGTGTCCCATCTTATTCTGTTTGTTAGCAATGATCTGTGAAAGAATTGGAGACATGGGGAATCAAGATCCACCGGAGACTAGAGCCATCTATAGAAGATGGGCAAATAGGATATGTGACTTCTATATGCCGACCTTGTTTTTTTCTTTTAAATTTGCTTATGATTGA

Protein sequence

MANVNSGSSTADDFARRIEASLRAAISQHEAAIQSLPAPVRQEVETAATEQAENSVGAIVRLRNEERGKGTAADTSVKPQASQKAPQVAPAVINPVPAPIAAQPATVGNIIPRIVGPLEADVIGIRGMQLVHREELPDVGYLHPGFIRELEWSDGILREMGGRLSILPDADLKEHAERLWRGLTVQCTNRVTGIAMLYISLEPPFTIKSAGNRSWEKAYAGDLKENYLKIYKEQFPIDAPVLSKACIDGFVWAFQNVSILKGTLGRVASSLNLSPKDLTKACWHKLTKMPLNSLVTILSKVTAESNIAGAPNVRGTWKYARVFGSEYFIGIQSKRCPILFCLLAMICERIGDMGNQDPPETRAIYRRWANRICDFYMPTLFFSFKFAYD*

Homology

[Close]

BLAST of CsaV3_2G036600 vs. NCBI nr
Match: KGN63419.1 (hypothetical protein Csa_021883 [Cucumis sativus])

HSP 1 Score: 778.1 bits (2008), Expect = 3.6e-221
Identity = 389/389 (100.00%), Postives = 389/389 (100.00%), Query Frame = 0


Query: 1   MANVNSGSSTADDFARRIEASLRAAISQHEAAIQSLPAPVRQEVETAATEQAENSVGAIV 60
           MANVNSGSSTADDFARRIEASLRAAISQHEAAIQSLPAPVRQEVETAATEQAENSVGAIV
Sbjct: 1   MANVNSGSSTADDFARRIEASLRAAISQHEAAIQSLPAPVRQEVETAATEQAENSVGAIV 60

Query: 61  RLRNEERGKGTAADTSVKPQASQKAPQVAPAVINPVPAPIAAQPATVGNIIPRIVGPLEA 120
           RLRNEERGKGTAADTSVKPQASQKAPQVAPAVINPVPAPIAAQPATVGNIIPRIVGPLEA
Sbjct: 61  RLRNEERGKGTAADTSVKPQASQKAPQVAPAVINPVPAPIAAQPATVGNIIPRIVGPLEA 120

Query: 121 DVIGIRGMQLVHREELPDVGYLHPGFIRELEWSDGILREMGGRLSILPDADLKEHAERLW 180
           DVIGIRGMQLVHREELPDVGYLHPGFIRELEWSDGILREMGGRLSILPDADLKEHAERLW
Sbjct: 121 DVIGIRGMQLVHREELPDVGYLHPGFIRELEWSDGILREMGGRLSILPDADLKEHAERLW 180

Query: 181 RGLTVQCTNRVTGIAMLYISLEPPFTIKSAGNRSWEKAYAGDLKENYLKIYKEQFPIDAP 240
           RGLTVQCTNRVTGIAMLYISLEPPFTIKSAGNRSWEKAYAGDLKENYLKIYKEQFPIDAP
Sbjct: 181 RGLTVQCTNRVTGIAMLYISLEPPFTIKSAGNRSWEKAYAGDLKENYLKIYKEQFPIDAP 240

Query: 241 VLSKACIDGFVWAFQNVSILKGTLGRVASSLNLSPKDLTKACWHKLTKMPLNSLVTILSK 300
           VLSKACIDGFVWAFQNVSILKGTLGRVASSLNLSPKDLTKACWHKLTKMPLNSLVTILSK
Sbjct: 241 VLSKACIDGFVWAFQNVSILKGTLGRVASSLNLSPKDLTKACWHKLTKMPLNSLVTILSK 300

Query: 301 VTAESNIAGAPNVRGTWKYARVFGSEYFIGIQSKRCPILFCLLAMICERIGDMGNQDPPE 360
           VTAESNIAGAPNVRGTWKYARVFGSEYFIGIQSKRCPILFCLLAMICERIGDMGNQDPPE
Sbjct: 301 VTAESNIAGAPNVRGTWKYARVFGSEYFIGIQSKRCPILFCLLAMICERIGDMGNQDPPE 360

Query: 361 TRAIYRRWANRICDFYMPTLFFSFKFAYD 390
           TRAIYRRWANRICDFYMPTLFFSFKFAYD
Sbjct: 361 TRAIYRRWANRICDFYMPTLFFSFKFAYD 389

[Close]

BLAST of CsaV3_2G036600 vs. NCBI nr
Match: YP_009130617.1 (polyprotein [Black grass varicosavirus-like virus] >CDF65984.1 coat protein [uncultured varicosavirus] >CEK42598.1 polyprotein [Black grass varicosavirus-like virus])

HSP 1 Score: 73.6 bits (179), Expect = 4.4e-09
Identity = 60/215 (27.91%), Postives = 91/215 (42.33%), Query Frame = 0


Query: 208 KSAGN--RSWEKAYAGDLKENYLKIYKEQFPIDAPVLSKACIDG---------------- 267
           KSA N  R++E+     +K  Y + YK++FP+      + CI+G                
Sbjct: 273 KSAENYVRAFEQ-----IKAKYYRFYKDEFPLTYLTPDRRCIEGLKEIYTNKEVYRNALL 332

Query: 268 -FVWAFQNVSILKG-----------TLGRVASSL--------NLSPKDLTKACWHKLTKM 327
            F+++F  ++  KG             G  A SL        +  P++L+   WH+ T+ 
Sbjct: 333 PFLYSFSELTDPKGMCRLLYEQHLALTGMHAVSLFVKVCLGSHCLPEELSSGLWHRTTRD 392

Query: 328 PLNSLVTILSKVTAESNIAGA--PNVRGTWKYARVFGSEYFIGIQSKRCPILFCLLAMIC 373
            L  +  IL      S+  G      +GTW YAR+    YF  IQ+K C  L C LA + 
Sbjct: 393 ALREIKDIL-----VSHFLGGIDGQEKGTWMYARLLNDAYFSRIQTKNCKNLVCALAYMA 452

[Close]

BLAST of CsaV3_2G036600 vs. NCBI nr
Match: XP_037459373.1 (uncharacterized protein LOC119330369 [Triticum dicoccoides])

HSP 1 Score: 68.6 bits (166), Expect = 1.4e-07
Identity = 34/92 (36.96%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 266 RVASSLNLSPKDLTKACWHKLTKMPLNSLVTILSKVTAESNIAGAPNVRGTWKYARVFGS 325
           R    L+ S   L    WH++TK  L SL  +        ++    N R TWKYAR++G+
Sbjct: 308 RACFGLHASLIQLGACLWHQMTKNTLISLCRVCRTYVVNPSV---ENSRETWKYARLYGT 367

Query: 326 EYFIGIQSKRCPILFCLLAMICERIGDMGNQD 358
           EYF  ++S +C +L C LA+IC+++    NQD
Sbjct: 368 EYFPLLKSDKCNLLLCCLAIICKKLEISKNQD 396

[Close]

BLAST of CsaV3_2G036600 vs. NCBI nr
Match: DAF42361.1 (TPA_asm: N [Lolium perenne virus 1])

HSP 1 Score: 68.2 bits (165), Expect = 1.8e-07
Identity = 47/198 (23.74%), Postives = 77/198 (38.89%), Query Frame = 0


Query: 223 LKENYLKIYKEQFPIDAPVLSKACIDGFVWAFQNVSILKGTLG----------------- 282
           +K  Y + YK++FP+    + K CI+G    + N  + K  L                  
Sbjct: 303 IKAKYYRFYKDEFPLRGFSVDKKCIEGLKEIYTNKHVFKNALAPFLYSFSSLGDPKGMCK 362

Query: 283 -------------------RVASSLNLSPKDLTKACWHKLTKMPLNSLVTIL--SKVTAE 342
                              +V    +  P++L+   WH+ T+  L  +  IL    ++ +
Sbjct: 363 LLYEQHLALTGMHAVNLFVKVCLFAHCFPEELSSGLWHRTTRDALREIKDILVHHHLSED 422

Query: 343 SNIAGAPNVRGTWKYARVFGSEYFIGIQSKRCPILFCLLAMICERIGDMGNQD------- 373
           +N       + TW YAR+     F  IQ+  C  L C LA + +++G  GNQ+       
Sbjct: 423 TN-----QQKHTWMYARLMDDTRFTSIQTSYCKNLVCALAFMAQQMGIAGNQNVMNIVHI 482

[Close]

BLAST of CsaV3_2G036600 vs. NCBI nr
Match: XP_015895577.1 (uncharacterized protein LOC107429412 [Ziziphus jujuba])

HSP 1 Score: 60.5 bits (145), Expect = 3.8e-05
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 0


Query: 266 RVASSLNLSPKDLTKACWHKLTKMPLNSLVTILSKVTAESNIAGAPNVRGTWKYARVFGS 325
           RVA+ LN +P DL+ A  H++T+  L  +  IL      ++       R TWKYAR+F  
Sbjct: 250 RVATKLNATPDDLSLALDHRMTRRGLVVVKKILLNFDRSTD---DKQRRQTWKYARLFDE 309

Query: 326 EYFIGIQSKRCPILFCLLAMICERIGD 353
           E F+ + +K C  L  +LAMI E++G+
Sbjct: 310 EMFVDLMTKNCGELTFILAMILEKMGE 333

[Close]

BLAST of CsaV3_2G036600 vs. ExPASy TrEMBL
Match: A0A0A0LR10 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G441740 PE=4 SV=1)

HSP 1 Score: 778.1 bits (2008), Expect = 1.7e-221
Identity = 389/389 (100.00%), Postives = 389/389 (100.00%), Query Frame = 0


Query: 1   MANVNSGSSTADDFARRIEASLRAAISQHEAAIQSLPAPVRQEVETAATEQAENSVGAIV 60
           MANVNSGSSTADDFARRIEASLRAAISQHEAAIQSLPAPVRQEVETAATEQAENSVGAIV
Sbjct: 1   MANVNSGSSTADDFARRIEASLRAAISQHEAAIQSLPAPVRQEVETAATEQAENSVGAIV 60

Query: 61  RLRNEERGKGTAADTSVKPQASQKAPQVAPAVINPVPAPIAAQPATVGNIIPRIVGPLEA 120
           RLRNEERGKGTAADTSVKPQASQKAPQVAPAVINPVPAPIAAQPATVGNIIPRIVGPLEA
Sbjct: 61  RLRNEERGKGTAADTSVKPQASQKAPQVAPAVINPVPAPIAAQPATVGNIIPRIVGPLEA 120

Query: 121 DVIGIRGMQLVHREELPDVGYLHPGFIRELEWSDGILREMGGRLSILPDADLKEHAERLW 180
           DVIGIRGMQLVHREELPDVGYLHPGFIRELEWSDGILREMGGRLSILPDADLKEHAERLW
Sbjct: 121 DVIGIRGMQLVHREELPDVGYLHPGFIRELEWSDGILREMGGRLSILPDADLKEHAERLW 180

Query: 181 RGLTVQCTNRVTGIAMLYISLEPPFTIKSAGNRSWEKAYAGDLKENYLKIYKEQFPIDAP 240
           RGLTVQCTNRVTGIAMLYISLEPPFTIKSAGNRSWEKAYAGDLKENYLKIYKEQFPIDAP
Sbjct: 181 RGLTVQCTNRVTGIAMLYISLEPPFTIKSAGNRSWEKAYAGDLKENYLKIYKEQFPIDAP 240

Query: 241 VLSKACIDGFVWAFQNVSILKGTLGRVASSLNLSPKDLTKACWHKLTKMPLNSLVTILSK 300
           VLSKACIDGFVWAFQNVSILKGTLGRVASSLNLSPKDLTKACWHKLTKMPLNSLVTILSK
Sbjct: 241 VLSKACIDGFVWAFQNVSILKGTLGRVASSLNLSPKDLTKACWHKLTKMPLNSLVTILSK 300

Query: 301 VTAESNIAGAPNVRGTWKYARVFGSEYFIGIQSKRCPILFCLLAMICERIGDMGNQDPPE 360
           VTAESNIAGAPNVRGTWKYARVFGSEYFIGIQSKRCPILFCLLAMICERIGDMGNQDPPE
Sbjct: 301 VTAESNIAGAPNVRGTWKYARVFGSEYFIGIQSKRCPILFCLLAMICERIGDMGNQDPPE 360

Query: 361 TRAIYRRWANRICDFYMPTLFFSFKFAYD 390
           TRAIYRRWANRICDFYMPTLFFSFKFAYD
Sbjct: 361 TRAIYRRWANRICDFYMPTLFFSFKFAYD 389

[Close]

BLAST of CsaV3_2G036600 vs. ExPASy TrEMBL
Match: A0A024HA00 (Coat protein OS=uncultured varicosavirus OX=1342375 GN=CP PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.1e-09
Identity = 60/215 (27.91%), Postives = 91/215 (42.33%), Query Frame = 0


Query: 208 KSAGN--RSWEKAYAGDLKENYLKIYKEQFPIDAPVLSKACIDG---------------- 267
           KSA N  R++E+     +K  Y + YK++FP+      + CI+G                
Sbjct: 273 KSAENYVRAFEQ-----IKAKYYRFYKDEFPLTYLTPDRRCIEGLKEIYTNKEVYRNALL 332

Query: 268 -FVWAFQNVSILKG-----------TLGRVASSL--------NLSPKDLTKACWHKLTKM 327
            F+++F  ++  KG             G  A SL        +  P++L+   WH+ T+ 
Sbjct: 333 PFLYSFSELTDPKGMCRLLYEQHLALTGMHAVSLFVKVCLGSHCLPEELSSGLWHRTTRD 392

Query: 328 PLNSLVTILSKVTAESNIAGA--PNVRGTWKYARVFGSEYFIGIQSKRCPILFCLLAMIC 373
            L  +  IL      S+  G      +GTW YAR+    YF  IQ+K C  L C LA + 
Sbjct: 393 ALREIKDIL-----VSHFLGGIDGQEKGTWMYARLLNDAYFSRIQTKNCKNLVCALAYMA 452

[Close]

BLAST of CsaV3_2G036600 vs. ExPASy TrEMBL
Match: A0A0D6DU22 (Polyprotein OS=Black grass varicosavirus-like virus OX=1587515 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.1e-09
Identity = 60/215 (27.91%), Postives = 91/215 (42.33%), Query Frame = 0


Query: 208 KSAGN--RSWEKAYAGDLKENYLKIYKEQFPIDAPVLSKACIDG---------------- 267
           KSA N  R++E+     +K  Y + YK++FP+      + CI+G                
Sbjct: 273 KSAENYVRAFEQ-----IKAKYYRFYKDEFPLTYLTPDRRCIEGLKEIYTNKEVYRNALL 332

Query: 268 -FVWAFQNVSILKG-----------TLGRVASSL--------NLSPKDLTKACWHKLTKM 327
            F+++F  ++  KG             G  A SL        +  P++L+   WH+ T+ 
Sbjct: 333 PFLYSFSELTDPKGMCRLLYEQHLALTGMHAVSLFVKVCLGSHCLPEELSSGLWHRTTRD 392

Query: 328 PLNSLVTILSKVTAESNIAGA--PNVRGTWKYARVFGSEYFIGIQSKRCPILFCLLAMIC 373
            L  +  IL      S+  G      +GTW YAR+    YF  IQ+K C  L C LA + 
Sbjct: 393 ALREIKDIL-----VSHFLGGIDGQEKGTWMYARLLNDAYFSRIQTKNCKNLVCALAYMA 452

[Close]

BLAST of CsaV3_2G036600 vs. ExPASy TrEMBL
Match: A0A6P4B9M9 (uncharacterized protein LOC107429412 OS=Ziziphus jujuba OX=326968 GN=LOC107429412 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-05
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 0


Query: 266 RVASSLNLSPKDLTKACWHKLTKMPLNSLVTILSKVTAESNIAGAPNVRGTWKYARVFGS 325
           RVA+ LN +P DL+ A  H++T+  L  +  IL      ++       R TWKYAR+F  
Sbjct: 250 RVATKLNATPDDLSLALDHRMTRRGLVVVKKILLNFDRSTD---DKQRRQTWKYARLFDE 309

Query: 326 EYFIGIQSKRCPILFCLLAMICERIGD 353
           E F+ + +K C  L  +LAMI E++G+
Sbjct: 310 EMFVDLMTKNCGELTFILAMILEKMGE 333

[Close]

BLAST of CsaV3_2G036600 vs. ExPASy TrEMBL
Match: A0A540NKE7 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_002884 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.4e-05
Identity = 34/101 (33.66%), Postives = 50/101 (49.50%), Query Frame = 0


Query: 266 RVASSLNLSPKDLTKACWHKLTKMPLNSLVTILSKVTAESNIAG--APNVRGTWKYARVF 325
           R  + L+  P DL KA    + K  +   + I+     ES I        RGT++YAR+F
Sbjct: 236 RAVTGLHCQPTDLMKALHTSMRKKGILDELRII----IESYIGSEEEDKKRGTFQYARLF 295

Query: 326 GSEYFIGIQSKRCPILFCLLAMICERIGDMGNQDPPETRAI 365
            S+ F  +QSK C  L C+LA +C++ G  G  D  +   I
Sbjct: 296 DSQMFGNLQSKNCAHLVCILAYLCQQCGSAGTGDATQIAVI 332

The following BLAST results are available for this feature:

BLAST of CsaV3_2G036600 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63419.1	3.6e-221	100.00	hypothetical protein Csa_021883 [Cucumis sativus]	[more]
YP_009130617.1	4.4e-09	27.91	polyprotein [Black grass varicosavirus-like virus] >CDF65984.1 coat protein [unc...	[more]
XP_037459373.1	1.4e-07	36.96	uncharacterized protein LOC119330369 [Triticum dicoccoides]	[more]
DAF42361.1	1.8e-07	23.74	TPA_asm: N [Lolium perenne virus 1]	[more]
XP_015895577.1	3.8e-05	37.93	uncharacterized protein LOC107429412 [Ziziphus jujuba]	[more]

BLAST of CsaV3_2G036600 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G036600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LR10	1.7e-221	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G441740 PE=4 SV=1	[more]
A0A024HA00	2.1e-09	27.91	Coat protein OS=uncultured varicosavirus OX=1342375 GN=CP PE=4 SV=1	[more]
A0A0D6DU22	2.1e-09	27.91	Polyprotein OS=Black grass varicosavirus-like virus OX=1587515 PE=4 SV=1	[more]
A0A6P4B9M9	1.8e-05	37.93	uncharacterized protein LOC107429412 OS=Ziziphus jujuba OX=326968 GN=LOC10742941...	[more]
A0A540NKE7	5.4e-05	33.66	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_002884 PE=4 SV=1	[more]

BLAST of CsaV3_2G036600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004902	Rhabdovirus nucleoprotein	PFAM	PF03216	Rhabdo_ncap_2	coord: 41..266 e-value: 7.3E-38 score: 130.6 coord: 267..346 e-value: 2.7E-28 score: 99.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G036600.1	CsaV3_2G036600.1	mRNA