CsaV3_2G035750 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G035750
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Peptidase, M48 family
Location	chr2: 23979485 .. 23981145 (+)
RNA-Seq Expression	CsaV3_2G035750
Synteny	CsaV3_2G035750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGTAAAGAAAATTTTATTTAATCATTGATGGAAGATAATTGATTATTTGAGAAAAGGTAAATATTTGTTGAGGAGACAGGTTGATGTGATTGGATTTATTAAGAAAGAGAAGAAGTTTGGTTTTTAATCATAAAGGAAAAGGGAAAAAAGAAACAGGAAATGGAAACTGAAGCATAATATTATAACTATTATTATTTAATCTTATAAATGGTGATTCGTATAGCATGTCATTTCATCTTCTCCTTCACCATAGAAGCCCTACTCACAACAATGACATTGTCGCCGTTGTCAGTCGAGCTTCGCCATCAAGTCCTTTGTCGTTGATCCCCTCGTTTCAACAAGCTGAAGGATGTTCTACATCGAAGACTGCACGAAACTCCGAGTCGTTCGTTAGTCAGAGCAACCAGTCTTCTCTACGCAAACCTCCTCATCTACGCCATATTCCTTCATCTAAGCTGATTTAGTCGCGCCTAGTCGAACAAGTACTTGACTGAACTACGCCCTCCGTTCGTGTCGATCTCTGTTTCTGTCTAAGCTACACAAGTCGCACACGTTTTTCCCTTCTTTTCAAGCCATGCCGCGTCTCTTCTCTCAACCAAGCCATTTACCTTTTTCCAGCCCACCTTTGGTGGGTATTTATTACGCCCTACCTCAAATGTCACACCATGCGACCAAGTGGAGGATGTGCTGCCTAGACATTCATTGCATATCTCTCTATGAGATGACACGTCGAACACCTAGAAAGTAAAACAATTCTCCTTCTTTTCTCTTTGCAAAGCTTTTTCATTGAGCCTTAGAGACCTTCACAACTTTTGCAACAAAAAAATAACTCTTCAACAATTAGCTTTGCACCTAACACTTTTACAAGCACAACTTAATTTTAACCTCTTAGGCAACAACTCAAGGAAATACAATAAAACAACAGAAATAACTTAACTTCTTATTCTTATTAACTTAACACTTGCAGAAGTTACAAGATACAAATTACAACTCTTAAACTTCATTGTGCAAGAAATAAAACTAAGTTTGGTTTTATCACATCCTTCTTCTTTCCACCACCTAATGCTGCTTCTTGAGATGTGGTACTTAGAAGTGTGAAGCTTTCCTCTCATCCTTCTCCCTTAGACAATCCAACTTAAGGAAAAGCTTCAGACCTTCTTTCCCCCACCTCAGCTCTTCAACTCTTTTGCTCTCTAGTTCATCGAGTTAGGCCTCACTAACCTGGTTATTGCTCTCGCCTTTCCACCAAGCTTTCTCATCCACGCTAAGGGAGCAATGCGCTTACCAACTGGCTCCTTAGGCGTATGATGAGAAGCCAAGGCTAGCACGCCATGTAAGACTACAAAACAACTATGCTTTCCCTTCTTAACTAGGCTACAACACCTTAGAATCAACCTTCGGATGACTTCAATGCTTGACAACCTGAGAAGGAAAAAACTTAAAACATAAATCAAACGATTTTAGTAAGTGATGAGTTTGAGAAAACCTTTTTTTGAAAGTACACAAAATCACAAATAATAAGATCAAACCACATCAAATAAATCATAGCACATCAAACCACCATGAATAAAATCACTATCCCAACAAGCATCACAAGCACCGCGTGCTCACATCATTTCGCAACAAGCTCAACACTAAGACCTATGATTCTCTCCTTGAG

mRNA sequence

ATGTCATTTCATCTTCTCCTTCACCATAGAAGCCCTACTCACAACAATGACATTGTCGCCGTTGTCAGTCGAGCTTCGCCATCAAGTCCTTTGTCGTTGATCCCCTCGTTTCAACAAGCTGAAGGATGTTCTACATCGAAGACTGCACGAAACTCCGAGTCGTTCGTTAGTCAGAGCAACCAGTCTTCTCTACGCAAACCTCCTCATCTACGCCATATTCCTTCATCTAAGCTGATTTAG

Coding sequence (CDS)

ATGTCATTTCATCTTCTCCTTCACCATAGAAGCCCTACTCACAACAATGACATTGTCGCCGTTGTCAGTCGAGCTTCGCCATCAAGTCCTTTGTCGTTGATCCCCTCGTTTCAACAAGCTGAAGGATGTTCTACATCGAAGACTGCACGAAACTCCGAGTCGTTCGTTAGTCAGAGCAACCAGTCTTCTCTACGCAAACCTCCTCATCTACGCCATATTCCTTCATCTAAGCTGATTTAG

Protein sequence

MSFHLLLHHRSPTHNNDIVAVVSRASPSSPLSLIPSFQQAEGCSTSKTARNSESFVSQSNQSSLRKPPHLRHIPSSKLI*

Homology

[Close]

BLAST of CsaV3_2G035750 vs. NCBI nr
Match: KGN63329.1 (hypothetical protein Csa_022651 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 4.0e-34
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MSFHLLLHHRSPTHNNDIVAVVSRASPSSPLSLIPSFQQAEGCSTSKTARNSESFVSQSN 60
          MSFHLLLHHRSPTHNNDIVAVVSRASPSSPLSLIPSFQQAEGCSTSKTARNSESFVSQSN
Sbjct: 1  MSFHLLLHHRSPTHNNDIVAVVSRASPSSPLSLIPSFQQAEGCSTSKTARNSESFVSQSN 60

Query: 61 QSSLRKPPHLRHIPSSKLI 80
          QSSLRKPPHLRHIPSSKLI
Sbjct: 61 QSSLRKPPHLRHIPSSKLI 79

[Close]

BLAST of CsaV3_2G035750 vs. ExPASy TrEMBL
Match: A0A0A0LQP9 (Peptidase, M48 family OS=Cucumis sativus OX=3659 GN=Csa_2G429020 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.9e-34
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MSFHLLLHHRSPTHNNDIVAVVSRASPSSPLSLIPSFQQAEGCSTSKTARNSESFVSQSN 60
          MSFHLLLHHRSPTHNNDIVAVVSRASPSSPLSLIPSFQQAEGCSTSKTARNSESFVSQSN
Sbjct: 1  MSFHLLLHHRSPTHNNDIVAVVSRASPSSPLSLIPSFQQAEGCSTSKTARNSESFVSQSN 60

Query: 61 QSSLRKPPHLRHIPSSKLI 80
          QSSLRKPPHLRHIPSSKLI
Sbjct: 61 QSSLRKPPHLRHIPSSKLI 79

The following BLAST results are available for this feature:

BLAST of CsaV3_2G035750 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63329.1	4.0e-34	100.00	hypothetical protein Csa_022651 [Cucumis sativus]	[more]

BLAST of CsaV3_2G035750 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G035750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQP9	1.9e-34	100.00	Peptidase, M48 family OS=Cucumis sativus OX=3659 GN=Csa_2G429020 PE=4 SV=1	[more]

BLAST of CsaV3_2G035750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G035750.1	CsaV3_2G035750.1	mRNA