CsaV3_2G035410 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G035410
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	mitochondrial import receptor subunit TOM7-1-like
Location	chr2: 23682085 .. 23682926 (-)
RNA-Seq Expression	CsaV3_2G035410
Synteny	CsaV3_2G035410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCGAAGGTTTCTCTTAGGAGCAAGGGTAAAAGCTCCAAGTCTTCATCTAAGTCATCTGAGGAGAAATCCGCTACTCAAGCCTTCAAGGAGTGGACTACATGGGCCGTAAAGAAAGCTAAGGTCGTCACCCACTACGGCTTTATTCCTCTGGTCATCATCATCGGCATGAACTCCGAGCCTAAACCTCAGCTCTCCCAACTCCTCAGCCCCGTTTGATTTGATTACTTTCTTCCATCATGGATCGGGTTTGTTTTATATGGATGTTTTTGTTGGGGGCTAGTTAGCGTATAAATTTTAGGTAAGTTTGGGTATAATGTTCACATGCTTGAACTACAGAAGACATGTAATAGTTTGAGGTGAAAGTTTTGATCTATTTTTTCTTTTTTATTTCTTCTCAAATATCTGATTTACTTCACCGGTATGAATCTTGGTACGCTTCGTTTTTTCTGAGTATTGTCTGTTTATTCAAATAATTGAACGGTTTTAGGGTTTATTTCCGCTATCTGATCCGTGATCCCTCAAGACTGATATGGGTTGTACTATGAAAAGCCCCATTTTGTAATGCCTGTTTTTCCTTCCTCTTCTTTCAAGTTAATAGGAATTGATCAAGGATTTAGTCACCATTGTATGACTTGATTCTATTATCTTTCGTTATGTTCTATTATTTAAATCTTGGCTTTAAATTGTGATAATAAATTGCAATGGCTGAGTATCATGTTCTTAGTATATCATGCTATCTAGTCTATGAGTTAGTTGTTTCTGTAGGTTCCTGCTATAATGTTTAACAGGTTCAGGTTGTTTCTAACCTAAGGGGTCTTATGGCACGTTTAAAGTGA

mRNA sequence

ATGGCGTCGAAGGTTTCTCTTAGGAGCAAGGGTAAAAGCTCCAAGTCTTCATCTAAGTCATCTGAGGAGAAATCCGCTACTCAAGCCTTCAAGGAGTGGACTACATGGGCCGTAAAGAAAGCTAAGGTCGTCACCCACTACGGCTTTATTCCTCTGGTCATCATCATCGGCATGAACTCCGAGCCTAAACCTCAGCTCTCCCAACTCCTCAGCCCCGTTCAGGTTGTTTCTAACCTAAGGGGTCTTATGGCACGTTTAAAGTGA

Coding sequence (CDS)

ATGGCGTCGAAGGTTTCTCTTAGGAGCAAGGGTAAAAGCTCCAAGTCTTCATCTAAGTCATCTGAGGAGAAATCCGCTACTCAAGCCTTCAAGGAGTGGACTACATGGGCCGTAAAGAAAGCTAAGGTCGTCACCCACTACGGCTTTATTCCTCTGGTCATCATCATCGGCATGAACTCCGAGCCTAAACCTCAGCTCTCCCAACTCCTCAGCCCCGTTCAGGTTGTTTCTAACCTAAGGGGTCTTATGGCACGTTTAAAGTGA

Protein sequence

MASKVSLRSKGKSSKSSSKSSEEKSATQAFKEWTTWAVKKAKVVTHYGFIPLVIIIGMNSEPKPQLSQLLSPVQVVSNLRGLMARLK*

Homology

[Close]

BLAST of CsaV3_2G035410 vs. NCBI nr
Match: KAE8652313.1 (hypothetical protein Csa_022175 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 2.3e-35
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MASKVSLRSKGKSSKSSSKSSEEKSATQAFKEWTTWAVKKAKVVTHYGFIPLVIIIGMNS 60
          MASKVSLRSKGKSSKSSSKSSEEKSATQAFKEWTTWAVKKAKVVTHYGFIPLVIIIGMNS
Sbjct: 1  MASKVSLRSKGKSSKSSSKSSEEKSATQAFKEWTTWAVKKAKVVTHYGFIPLVIIIGMNS 60

Query: 61 EPKPQLSQLLSPVQVVSNLRGLMARLK 88
          EPKPQLSQLLSPVQVVSNLRGLMARLK
Sbjct: 61 EPKPQLSQLLSPVQVVSNLRGLMARLK 87

[Close]

BLAST of CsaV3_2G035410 vs. NCBI nr
Match: XP_004151870.1 (mitochondrial import receptor subunit TOM7-1 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 8.0e-28
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MASKVSLRSKGKSSKSSSKSSEEKSATQAFKEWTTWAVKKAKVVTHYGFIPLVIIIGMNS 60
          MASKVSLRSKGKSSKSSSKSSEEKSATQAFKEWTTWAVKKAKVVTHYGFIPLVIIIGMNS
Sbjct: 1  MASKVSLRSKGKSSKSSSKSSEEKSATQAFKEWTTWAVKKAKVVTHYGFIPLVIIIGMNS 60

Query: 61 EPKPQLSQLLSPV 74
          EPKPQLSQLLSPV
Sbjct: 61 EPKPQLSQLLSPV 73

[Close]

BLAST of CsaV3_2G035410 vs. NCBI nr
Match: XP_008455820.1 (PREDICTED: mitochondrial import receptor subunit TOM7-1-like [Cucumis melo] >TYJ98347.1 mitochondrial import receptor subunit TOM7-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 1.0e-27
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MASKVSLRSKGKSSKSSSKSSEEKSATQAFKEWTTWAVKKAKVVTHYGFIPLVIIIGMNS 60
          MASKVSLRSKGKSSKSSSKSSEEKSATQAFKEWTTWAVKKAKV+THYGFIPLVIIIGMNS
Sbjct: 1  MASKVSLRSKGKSSKSSSKSSEEKSATQAFKEWTTWAVKKAKVITHYGFIPLVIIIGMNS 60

Query: 61 EPKPQLSQLLSPV 74
          EPKPQLSQLLSPV
Sbjct: 61 EPKPQLSQLLSPV 73

[Close]

BLAST of CsaV3_2G035410 vs. NCBI nr
Match: XP_038879584.1 (mitochondrial import receptor subunit TOM7-1-like [Benincasa hispida])

HSP 1 Score: 130.6 bits (327), Expect = 6.8e-27
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1  MASKVSLRSKGKSSKSSSKSSEEKSATQAFKEWTTWAVKKAKVVTHYGFIPLVIIIGMNS 60
          MASKVSLRSKGKSSK SSKSSEEKSATQ+FKEWTTWAVKKAKV+THYGFIPLVIIIGMNS
Sbjct: 1  MASKVSLRSKGKSSKGSSKSSEEKSATQSFKEWTTWAVKKAKVITHYGFIPLVIIIGMNS 60

Query: 61 EPKPQLSQLLSPV 74
          EPKPQLSQLLSPV
Sbjct: 61 EPKPQLSQLLSPV 73

[Close]

BLAST of CsaV3_2G035410 vs. NCBI nr
Match: XP_022921829.1 (mitochondrial import receptor subunit TOM7-1-like [Cucurbita moschata] >XP_022988536.1 mitochondrial import receptor subunit TOM7-1-like [Cucurbita maxima] >XP_023516449.1 mitochondrial import receptor subunit TOM7-1-like [Cucurbita pepo subsp. pepo] >KAG6589655.1 Mitochondrial import receptor subunit TOM7-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023343.1 Mitochondrial import receptor subunit TOM7-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.0 bits (323), Expect = 2.0e-26
Identity = 69/73 (94.52%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 1  MASKVSLRSKGKSSKSSSKSSEEKSATQAFKEWTTWAVKKAKVVTHYGFIPLVIIIGMNS 60
          MASKVSLRSKGKSSK SSKSSE+KS TQAFKEWTTWAVKKAKV+THYGFIPLVIIIGMNS
Sbjct: 1  MASKVSLRSKGKSSKGSSKSSEDKSTTQAFKEWTTWAVKKAKVITHYGFIPLVIIIGMNS 60

Query: 61 EPKPQLSQLLSPV 74
          EPKPQLSQLLSPV
Sbjct: 61 EPKPQLSQLLSPV 73

[Close]

BLAST of CsaV3_2G035410 vs. ExPASy Swiss-Prot
Match: Q9ASY8 (Mitochondrial import receptor subunit TOM7-1 OS=Arabidopsis thaliana OX=3702 GN=TOM7-1 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.5e-16
Identity = 49/76 (64.47%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 1  MASKVSL---RSKGKSSKSSSKSSEEKSATQAFKEWTTWAVKKAKVVTHYGFIPLVIIIG 60
          M S +SL   + KGK SK +S SS++KS     KEWT W++KKAKVVTHYGFIPLVI +G
Sbjct: 1  MESTISLKVNKGKGKGSKGAS-SSDDKSKFDVVKEWTNWSLKKAKVVTHYGFIPLVIFVG 60

Query: 61 MNSEPKPQLSQLLSPV 74
          MNS+PKP L QLLSPV
Sbjct: 61 MNSDPKPHLFQLLSPV 75

[Close]

BLAST of CsaV3_2G035410 vs. ExPASy Swiss-Prot
Match: O82067 (Mitochondrial import receptor subunit TOM7-1 OS=Solanum tuberosum OX=4113 GN=TOM7-1 PE=3 SV=3)

HSP 1 Score: 83.6 bits (205), Expect = 1.2e-15
Identity = 45/71 (63.38%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 7  LRSKGKSSKSSSKSSEEKSAT----QAFKEWTTWAVKKAKVVTHYGFIPLVIIIGMNSEP 66
          L+ KGK++K ++ + E+  A     +  KEW TW  KKAKV+THYGFIPLVIIIGMNSEP
Sbjct: 2  LKPKGKNTKKAAAADEDDGAVAVVGKFVKEWGTWTAKKAKVITHYGFIPLVIIIGMNSEP 61

Query: 67 KPQLSQLLSPV 74
          KP LSQLLSPV
Sbjct: 62 KPSLSQLLSPV 72

[Close]

BLAST of CsaV3_2G035410 vs. ExPASy Swiss-Prot
Match: Q3ECI7 (Mitochondrial import receptor subunit TOM7-2 OS=Arabidopsis thaliana OX=3702 GN=TOM7-2 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.6e-15
Identity = 46/77 (59.74%), Postives = 57/77 (74.03%), Query Frame = 0


Query: 1  MASKVSLRSKGKS----SKSSSKSSEEKSATQAFKEWTTWAVKKAKVVTHYGFIPLVIII 60
          MA+K +L+ KGK+      SSS SS   S  + FK+WT W+++KAKV THYGFIPL+III
Sbjct: 1  MAAKSTLKIKGKAKPSKGSSSSSSSSASSKYKVFKDWTNWSLQKAKVATHYGFIPLIIII 60

Query: 61 GMNSEPKPQLSQLLSPV 74
          GMNS+PKP L  LLSPV
Sbjct: 61 GMNSDPKPHLFHLLSPV 77

[Close]

BLAST of CsaV3_2G035410 vs. ExPASy TrEMBL
Match: A0A0A0LN99 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G424720 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.9e-28
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MASKVSLRSKGKSSKSSSKSSEEKSATQAFKEWTTWAVKKAKVVTHYGFIPLVIIIGMNS 60
          MASKVSLRSKGKSSKSSSKSSEEKSATQAFKEWTTWAVKKAKVVTHYGFIPLVIIIGMNS
Sbjct: 1  MASKVSLRSKGKSSKSSSKSSEEKSATQAFKEWTTWAVKKAKVVTHYGFIPLVIIIGMNS 60

Query: 61 EPKPQLSQLLSPV 74
          EPKPQLSQLLSPV
Sbjct: 61 EPKPQLSQLLSPV 73

[Close]

BLAST of CsaV3_2G035410 vs. ExPASy TrEMBL
Match: A0A5D3BGU9 (Mitochondrial import receptor subunit TOM7-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G00780 PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.1e-28
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MASKVSLRSKGKSSKSSSKSSEEKSATQAFKEWTTWAVKKAKVVTHYGFIPLVIIIGMNS 60
          MASKVSLRSKGKSSKSSSKSSEEKSATQAFKEWTTWAVKKAKV+THYGFIPLVIIIGMNS
Sbjct: 1  MASKVSLRSKGKSSKSSSKSSEEKSATQAFKEWTTWAVKKAKVITHYGFIPLVIIIGMNS 60

Query: 61 EPKPQLSQLLSPV 74
          EPKPQLSQLLSPV
Sbjct: 61 EPKPQLSQLLSPV 73

[Close]

BLAST of CsaV3_2G035410 vs. ExPASy TrEMBL
Match: A0A1S3C1D2 (mitochondrial import receptor subunit TOM7-1-like OS=Cucumis melo OX=3656 GN=LOC103495918 PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.1e-28
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MASKVSLRSKGKSSKSSSKSSEEKSATQAFKEWTTWAVKKAKVVTHYGFIPLVIIIGMNS 60
          MASKVSLRSKGKSSKSSSKSSEEKSATQAFKEWTTWAVKKAKV+THYGFIPLVIIIGMNS
Sbjct: 1  MASKVSLRSKGKSSKSSSKSSEEKSATQAFKEWTTWAVKKAKVITHYGFIPLVIIIGMNS 60

Query: 61 EPKPQLSQLLSPV 74
          EPKPQLSQLLSPV
Sbjct: 61 EPKPQLSQLLSPV 73

[Close]

BLAST of CsaV3_2G035410 vs. ExPASy TrEMBL
Match: A0A6J1JHG5 (mitochondrial import receptor subunit TOM7-1-like OS=Cucurbita maxima OX=3661 GN=LOC111485747 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 9.5e-27
Identity = 69/73 (94.52%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 1  MASKVSLRSKGKSSKSSSKSSEEKSATQAFKEWTTWAVKKAKVVTHYGFIPLVIIIGMNS 60
          MASKVSLRSKGKSSK SSKSSE+KS TQAFKEWTTWAVKKAKV+THYGFIPLVIIIGMNS
Sbjct: 1  MASKVSLRSKGKSSKGSSKSSEDKSTTQAFKEWTTWAVKKAKVITHYGFIPLVIIIGMNS 60

Query: 61 EPKPQLSQLLSPV 74
          EPKPQLSQLLSPV
Sbjct: 61 EPKPQLSQLLSPV 73

[Close]

BLAST of CsaV3_2G035410 vs. ExPASy TrEMBL
Match: A0A6J1E1M9 (mitochondrial import receptor subunit TOM7-1-like OS=Cucurbita moschata OX=3662 GN=LOC111429970 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 9.5e-27
Identity = 69/73 (94.52%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 1  MASKVSLRSKGKSSKSSSKSSEEKSATQAFKEWTTWAVKKAKVVTHYGFIPLVIIIGMNS 60
          MASKVSLRSKGKSSK SSKSSE+KS TQAFKEWTTWAVKKAKV+THYGFIPLVIIIGMNS
Sbjct: 1  MASKVSLRSKGKSSKGSSKSSEDKSTTQAFKEWTTWAVKKAKVITHYGFIPLVIIIGMNS 60

Query: 61 EPKPQLSQLLSPV 74
          EPKPQLSQLLSPV
Sbjct: 61 EPKPQLSQLLSPV 73

[Close]

BLAST of CsaV3_2G035410 vs. TAIR 10
Match: AT5G41685.1 (Mitochondrial outer membrane translocase complex, subunit Tom7 )

HSP 1 Score: 85.9 bits (211), Expect = 1.8e-17
Identity = 49/76 (64.47%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 1  MASKVSL---RSKGKSSKSSSKSSEEKSATQAFKEWTTWAVKKAKVVTHYGFIPLVIIIG 60
          M S +SL   + KGK SK +S SS++KS     KEWT W++KKAKVVTHYGFIPLVI +G
Sbjct: 1  MESTISLKVNKGKGKGSKGAS-SSDDKSKFDVVKEWTNWSLKKAKVVTHYGFIPLVIFVG 60

Query: 61 MNSEPKPQLSQLLSPV 74
          MNS+PKP L QLLSPV
Sbjct: 61 MNSDPKPHLFQLLSPV 75

[Close]

BLAST of CsaV3_2G035410 vs. TAIR 10
Match: AT1G64220.1 (translocase of outer membrane 7 kDa subunit 2 )

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-16
Identity = 46/77 (59.74%), Postives = 57/77 (74.03%), Query Frame = 0


Query: 1  MASKVSLRSKGKS----SKSSSKSSEEKSATQAFKEWTTWAVKKAKVVTHYGFIPLVIII 60
          MA+K +L+ KGK+      SSS SS   S  + FK+WT W+++KAKV THYGFIPL+III
Sbjct: 1  MAAKSTLKIKGKAKPSKGSSSSSSSSASSKYKVFKDWTNWSLQKAKVATHYGFIPLIIII 60

Query: 61 GMNSEPKPQLSQLLSPV 74
          GMNS+PKP L  LLSPV
Sbjct: 61 GMNSDPKPHLFHLLSPV 77

The following BLAST results are available for this feature:

BLAST of CsaV3_2G035410 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652313.1	2.3e-35	100.00	hypothetical protein Csa_022175 [Cucumis sativus]	[more]
XP_004151870.1	8.0e-28	100.00	mitochondrial import receptor subunit TOM7-1 [Cucumis sativus]	[more]
XP_008455820.1	1.0e-27	98.63	PREDICTED: mitochondrial import receptor subunit TOM7-1-like [Cucumis melo] >TYJ...	[more]
XP_038879584.1	6.8e-27	95.89	mitochondrial import receptor subunit TOM7-1-like [Benincasa hispida]	[more]
XP_022921829.1	2.0e-26	94.52	mitochondrial import receptor subunit TOM7-1-like [Cucurbita moschata] >XP_02298...	[more]

BLAST of CsaV3_2G035410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ASY8	2.5e-16	64.47	Mitochondrial import receptor subunit TOM7-1 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
O82067	1.2e-15	63.38	Mitochondrial import receptor subunit TOM7-1 OS=Solanum tuberosum OX=4113 GN=TOM...	[more]
Q3ECI7	1.6e-15	59.74	Mitochondrial import receptor subunit TOM7-2 OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of CsaV3_2G035410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LN99	3.9e-28	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G424720 PE=3 SV=1	[more]
A0A5D3BGU9	5.1e-28	98.63	Mitochondrial import receptor subunit TOM7-1-like OS=Cucumis melo var. makuwa OX...	[more]
A0A1S3C1D2	5.1e-28	98.63	mitochondrial import receptor subunit TOM7-1-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1JHG5	9.5e-27	94.52	mitochondrial import receptor subunit TOM7-1-like OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1E1M9	9.5e-27	94.52	mitochondrial import receptor subunit TOM7-1-like OS=Cucurbita moschata OX=3662 ...	[more]

BLAST of CsaV3_2G035410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41685.1	1.8e-17	64.47	Mitochondrial outer membrane translocase complex, subunit Tom7	[more]
AT1G64220.1	1.2e-16	59.74	translocase of outer membrane 7 kDa subunit 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012621	Mitochondrial import receptor subunit TOM7	PFAM	PF08038	Tom7	coord: 31..70 e-value: 2.6E-17 score: 62.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR34944:SF2	MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM7	coord: 1..73
None	No IPR available	PANTHER	PTHR34944	MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM7	coord: 1..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G035410.1	CsaV3_2G035410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030150	protein import into mitochondrial matrix
cellular_component	GO:0005742	mitochondrial outer membrane translocase complex