CsaV3_2G034970 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G034970
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2: 23339156 .. 23340261 (-)
RNA-Seq Expression	CsaV3_2G034970
Synteny	CsaV3_2G034970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCTTTTGTTTATCTGTCAGTTAACGCGGCACAACAAGCGCTTTCTCATGTGCCTTTTATTCTTCTCTCTCATCTCTCCCTATAAATTCACATCTTCACTACTGAACATTTATTCATTTCAATTTTCTTCAATAGTAACAACAATCCAATGGGGAATATCTGCTTTAAAAGCAACAAAGTTATGGCTCAAGACGACTCTTATGATGATTTTCCTCCTCATCACTTGATTGAACCTAAGAAAGTCCAGCAACAACCGCTTCCTGGATCCGCGATGGCCAAGCCAAAGAACGGAACCGGGGGTGCGGCTGGTAAGAAGGTAGTGAGGTTTAATTTACAAGAAGAAGAAAAAGACGAAGAGGGGAGAAATTCCGGGGACTCTGGACCCGGAGTGTTGAGGATTAAAGTGGTGATATCTCAGAAAGAGTTAAAACAGATATTGAAGAGTAGAGAGAATAATTCGTGTTCATTGGAGGAATTGATTGAGGAGTTGAAGGTGAAAGGCAGAGCGACGACGGTTTCTGCAGATGAAACTGGAAGCTGGAAGCCGGCTTTGGAATGTATTCCAGAAGGTGAATCTACATTAATGAATTGAAAGTTCTCTTGATCTGATCATCTCTTTAGTCGTTTTTGTTAGTAAATCTGTGAAATATTAGTGTAATTATTGTCTTGGTGTGTTATTTAATCACCAAAACTGTTACTGAATATCTGTGTGCATGTGATTCTTAGAAGGTGGAGTTGTGTGTTTTTTGAATAACAATATATAGGTGATAATGTATACTTAAGTAATTTTTGTAACAACCGTAGCTACAATTTTGAGATTGGAATAACAACTTGATATATGTTTATGGTTTTTTCCACCTTCGTCCATTAAAATATTTGACTACTACTCATACTCCCAATCTCCAAATTGGTATCACCGACACATTTTTTAGTATAGGCCTACGGCTTCAGTCTCCTTTACCTTCTCAACCTTATGCTATTGAAATAATAAATAGCTTTGATAAAATTATCTTTCAAACACTCTTTAGACCCAACTTCAAGCCACACCCTTTATGCAACAAAATTTTTGGATCTTCCATTCATTGTTATTATATTCTCTTCTCTCC

mRNA sequence

ATGGGGAATATCTGCTTTAAAAGCAACAAAGTTATGGCTCAAGACGACTCTTATGATGATTTTCCTCCTCATCACTTGATTGAACCTAAGAAAGTCCAGCAACAACCGCTTCCTGGATCCGCGATGGCCAAGCCAAAGAACGGAACCGGGGGTGCGGCTGGTAAGAAGGTAGTGAGGTTTAATTTACAAGAAGAAGAAAAAGACGAAGAGGGGAGAAATTCCGGGGACTCTGGACCCGGAGTGTTGAGGATTAAAGTGGTGATATCTCAGAAAGAGTTAAAACAGATATTGAAGAGTAGAGAGAATAATTCGTGTTCATTGGAGGAATTGATTGAGGAGTTGAAGGTGAAAGGCAGAGCGACGACGGTTTCTGCAGATGAAACTGGAAGCTGGAAGCCGGCTTTGGAATGTATTCCAGAAGGTGAATCTACATTAATGAATTGA

Coding sequence (CDS)

ATGGGGAATATCTGCTTTAAAAGCAACAAAGTTATGGCTCAAGACGACTCTTATGATGATTTTCCTCCTCATCACTTGATTGAACCTAAGAAAGTCCAGCAACAACCGCTTCCTGGATCCGCGATGGCCAAGCCAAAGAACGGAACCGGGGGTGCGGCTGGTAAGAAGGTAGTGAGGTTTAATTTACAAGAAGAAGAAAAAGACGAAGAGGGGAGAAATTCCGGGGACTCTGGACCCGGAGTGTTGAGGATTAAAGTGGTGATATCTCAGAAAGAGTTAAAACAGATATTGAAGAGTAGAGAGAATAATTCGTGTTCATTGGAGGAATTGATTGAGGAGTTGAAGGTGAAAGGCAGAGCGACGACGGTTTCTGCAGATGAAACTGGAAGCTGGAAGCCGGCTTTGGAATGTATTCCAGAAGGTGAATCTACATTAATGAATTGA

Protein sequence

MGNICFKSNKVMAQDDSYDDFPPHHLIEPKKVQQQPLPGSAMAKPKNGTGGAAGKKVVRFNLQEEEKDEEGRNSGDSGPGVLRIKVVISQKELKQILKSRENNSCSLEELIEELKVKGRATTVSADETGSWKPALECIPEGESTLMN*

Homology

[Close]

BLAST of CsaV3_2G034970 vs. NCBI nr
Match: KGN63254.1 (hypothetical protein Csa_022493 [Cucumis sativus])

HSP 1 Score: 297.4 bits (760), Expect = 7.0e-77
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MGNICFKSNKVMAQDDSYDDFPPHHLIEPKKVQQQPLPGSAMAKPKNGTGGAAGKKVVRF 60
           MGNICFKSNKVMAQDDSYDDFPPHHLIEPKKVQQQPLPGSAMAKPKNGTGGAAGKKVVRF
Sbjct: 1   MGNICFKSNKVMAQDDSYDDFPPHHLIEPKKVQQQPLPGSAMAKPKNGTGGAAGKKVVRF 60

Query: 61  NLQEEEKDEEGRNSGDSGPGVLRIKVVISQKELKQILKSRENNSCSLEELIEELKVKGRA 120
           NLQEEEKDEEGRNSGDSGPGVLRIKVVISQKELKQILKSRENNSCSLEELIEELKVKGRA
Sbjct: 61  NLQEEEKDEEGRNSGDSGPGVLRIKVVISQKELKQILKSRENNSCSLEELIEELKVKGRA 120

Query: 121 TTVSADETGSWKPALECIPEGESTLMN 148
           TTVSADETGSWKPALECIPEGESTLMN
Sbjct: 121 TTVSADETGSWKPALECIPEGESTLMN 147

[Close]

BLAST of CsaV3_2G034970 vs. NCBI nr
Match: TYK24218.1 (hypothetical protein E5676_scaffold27G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 238.8 bits (608), Expect = 3.0e-59
Identity = 124/147 (84.35%), Postives = 134/147 (91.16%), Query Frame = 0


Query: 1   MGNICFKSNKVMAQDDSYDDFPPHHLIEPKKVQQQPL-PGSAMAKPKNGTGGAAGKKVVR 60
           MGNICF++NKVMAQDDSYD+ PP   IE +KV++QPL PGSAMAKPKNGTGGAAGKKVVR
Sbjct: 1   MGNICFRTNKVMAQDDSYDNLPPDQFIEAEKVEEQPLRPGSAMAKPKNGTGGAAGKKVVR 60

Query: 61  FNLQEEEKDEEGRNSG-DSGPGVLRIKVVISQKELKQILKSRENNSCSLEELIEELKVKG 120
           FNLQEEE+D+E RNSG DSG GVLRIKVVISQKELK+ILK+RENNSCSLEELIEELKVKG
Sbjct: 61  FNLQEEEEDQEDRNSGDDSGAGVLRIKVVISQKELKEILKNRENNSCSLEELIEELKVKG 120

Query: 121 RATTVSADETGSWKPALECIPEGESTL 146
           RATTVS DE GSWKPALECIPEGE  L
Sbjct: 121 RATTVS-DEIGSWKPALECIPEGEGDL 146

[Close]

BLAST of CsaV3_2G034970 vs. NCBI nr
Match: XP_038902397.1 (uncharacterized protein LOC120089037 [Benincasa hispida])

HSP 1 Score: 164.9 bits (416), Expect = 5.5e-37
Identity = 99/150 (66.00%), Postives = 109/150 (72.67%), Query Frame = 0


Query: 1   MGNICFKSNKVMAQDDSYDDFPPHHLIEPKKVQQQPLPGSAMAKPKNGTG--GAAGKKVV 60
           MGN CFKSNKVMAQD+  D  PP   IE KKV+++P PGSAMAKPK      G A KKVV
Sbjct: 1   MGNNCFKSNKVMAQDEPEDLLPP---IEAKKVEEKPRPGSAMAKPKTAEARTGGASKKVV 60

Query: 61  RFNLQEEEKDEEGRNSGDSGPGVLRIKVVISQKELKQILKSRENNSCSLEELIEELKVKG 120
           RF LQEEE+    +NSGD   GVLRIKVV+SQKELKQ+LK RENNSC+LEELI ELKVKG
Sbjct: 61  RFKLQEEEE----KNSGDG--GVLRIKVVMSQKELKQMLKDRENNSCTLEELITELKVKG 120

Query: 121 RATTVS-------ADETGSWKPALECIPEG 142
           R TT+S        DE G WKP LE IPEG
Sbjct: 121 R-TTISDGRIDAVEDENGRWKPDLEGIPEG 140

[Close]

BLAST of CsaV3_2G034970 vs. NCBI nr
Match: KAG6570883.1 (hypothetical protein SDJN03_29798, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157.5 bits (397), Expect = 8.7e-35
Identity = 92/153 (60.13%), Postives = 107/153 (69.93%), Query Frame = 0


Query: 1   MGNICFKSNKVMAQDDS---YDDFPPHHLIEPKKVQQQPLPGSAMAKPKNG---TGGAAG 60
           MGN CFKSNKVMAQD+S     + PP   +E KKV+++P+ GSAMAKPK     +G AAG
Sbjct: 1   MGNSCFKSNKVMAQDESCLALSNSPP---VEAKKVEEKPVAGSAMAKPKTAEERSGAAAG 60

Query: 61  KKVVRFNLQEEEKDEEGRNSGDSGPGVLRIKVVISQKELKQILKSRENNSCSLEELIEEL 120
           KKVVRF LQEE+++  G        GVLRIKVV+SQ+ELKQILK  EN+S SLEELI E 
Sbjct: 61  KKVVRFKLQEEDENSGGSGGDGDRAGVLRIKVVMSQRELKQILKENENSSRSLEELIAEF 120

Query: 121 KVKGRATTVSA------DETGSWKPALECIPEG 142
           KVKGR T   A      DE GS +PALECIPEG
Sbjct: 121 KVKGRTTVSDAITDEVEDENGSRRPALECIPEG 150

[Close]

BLAST of CsaV3_2G034970 vs. NCBI nr
Match: XP_022140639.1 (uncharacterized protein LOC111011249 [Momordica charantia])

HSP 1 Score: 122.5 bits (306), Expect = 3.1e-24
Identity = 76/148 (51.35%), Postives = 95/148 (64.19%), Query Frame = 0


Query: 1   MGNICFKSNKVMAQDDSYDDFPPHHLIEPK-KVQQQPLPGSAMAKPKNGTG--GAAGKKV 60
           MGN C ++N+VMAQD++    P   L E   KV+ +P  GSA+A+PK       A  KKV
Sbjct: 43  MGN-CLRNNRVMAQDEACSPSPNSSLTETNYKVEDKPAAGSALARPKTEEARIAARRKKV 102

Query: 61  VRFNLQEEEKDEEGRNSGDSGPGVLRIKVVISQKELKQILKSRENNSCSLEELIEELKVK 120
           VRF  +E+E           G GVLRIKVV+SQKELKQILK RE+NS +LEEL+ ELK+K
Sbjct: 103 VRFQQREDE-------ISGGGGGVLRIKVVVSQKELKQILKDRESNSSTLEELLAELKMK 162

Query: 121 GRATTVS-----ADETGSWKPALECIPE 141
           GR  + +      DE GSW+PALE IPE
Sbjct: 163 GRTISDARADNEEDENGSWRPALESIPE 182

[Close]

BLAST of CsaV3_2G034970 vs. ExPASy TrEMBL
Match: A0A0A0LQE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418890 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.4e-77
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MGNICFKSNKVMAQDDSYDDFPPHHLIEPKKVQQQPLPGSAMAKPKNGTGGAAGKKVVRF 60
           MGNICFKSNKVMAQDDSYDDFPPHHLIEPKKVQQQPLPGSAMAKPKNGTGGAAGKKVVRF
Sbjct: 1   MGNICFKSNKVMAQDDSYDDFPPHHLIEPKKVQQQPLPGSAMAKPKNGTGGAAGKKVVRF 60

Query: 61  NLQEEEKDEEGRNSGDSGPGVLRIKVVISQKELKQILKSRENNSCSLEELIEELKVKGRA 120
           NLQEEEKDEEGRNSGDSGPGVLRIKVVISQKELKQILKSRENNSCSLEELIEELKVKGRA
Sbjct: 61  NLQEEEKDEEGRNSGDSGPGVLRIKVVISQKELKQILKSRENNSCSLEELIEELKVKGRA 120

Query: 121 TTVSADETGSWKPALECIPEGESTLMN 148
           TTVSADETGSWKPALECIPEGESTLMN
Sbjct: 121 TTVSADETGSWKPALECIPEGESTLMN 147

[Close]

BLAST of CsaV3_2G034970 vs. ExPASy TrEMBL
Match: A0A5D3DKZ8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00200 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.4e-59
Identity = 124/147 (84.35%), Postives = 134/147 (91.16%), Query Frame = 0


Query: 1   MGNICFKSNKVMAQDDSYDDFPPHHLIEPKKVQQQPL-PGSAMAKPKNGTGGAAGKKVVR 60
           MGNICF++NKVMAQDDSYD+ PP   IE +KV++QPL PGSAMAKPKNGTGGAAGKKVVR
Sbjct: 1   MGNICFRTNKVMAQDDSYDNLPPDQFIEAEKVEEQPLRPGSAMAKPKNGTGGAAGKKVVR 60

Query: 61  FNLQEEEKDEEGRNSG-DSGPGVLRIKVVISQKELKQILKSRENNSCSLEELIEELKVKG 120
           FNLQEEE+D+E RNSG DSG GVLRIKVVISQKELK+ILK+RENNSCSLEELIEELKVKG
Sbjct: 61  FNLQEEEEDQEDRNSGDDSGAGVLRIKVVISQKELKEILKNRENNSCSLEELIEELKVKG 120

Query: 121 RATTVSADETGSWKPALECIPEGESTL 146
           RATTVS DE GSWKPALECIPEGE  L
Sbjct: 121 RATTVS-DEIGSWKPALECIPEGEGDL 146

[Close]

BLAST of CsaV3_2G034970 vs. ExPASy TrEMBL
Match: A0A6J1CG85 (uncharacterized protein LOC111011249 OS=Momordica charantia OX=3673 GN=LOC111011249 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.5e-24
Identity = 76/148 (51.35%), Postives = 95/148 (64.19%), Query Frame = 0


Query: 1   MGNICFKSNKVMAQDDSYDDFPPHHLIEPK-KVQQQPLPGSAMAKPKNGTG--GAAGKKV 60
           MGN C ++N+VMAQD++    P   L E   KV+ +P  GSA+A+PK       A  KKV
Sbjct: 43  MGN-CLRNNRVMAQDEACSPSPNSSLTETNYKVEDKPAAGSALARPKTEEARIAARRKKV 102

Query: 61  VRFNLQEEEKDEEGRNSGDSGPGVLRIKVVISQKELKQILKSRENNSCSLEELIEELKVK 120
           VRF  +E+E           G GVLRIKVV+SQKELKQILK RE+NS +LEEL+ ELK+K
Sbjct: 103 VRFQQREDE-------ISGGGGGVLRIKVVVSQKELKQILKDRESNSSTLEELLAELKMK 162

Query: 121 GRATTVS-----ADETGSWKPALECIPE 141
           GR  + +      DE GSW+PALE IPE
Sbjct: 163 GRTISDARADNEEDENGSWRPALESIPE 182

[Close]

BLAST of CsaV3_2G034970 vs. ExPASy TrEMBL
Match: A0A0D2SHC7 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G149800 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.0e-12
Identity = 59/152 (38.82%), Postives = 86/152 (56.58%), Query Frame = 0


Query: 1   MGNICFKSNKVMAQDDSYDDF---PPHHLIEPK-KVQQQPLPGSAMAKPKNGTG-----G 60
           MGN CF SNK++A++D         P+ LI+    V      G+A     N         
Sbjct: 1   MGN-CFTSNKILAENDDLQGCSCNQPNQLIKDMGDVTVSKSEGAADGVKTNNNNMEKKTN 60

Query: 61  AAGKKVVRFNLQEEEK-DEEGRNSGDSGPGVLRIKVVISQKELKQILKSREN-NSCSLEE 120
              KKVVRFNL EE   D+     G+S  GV+RI++V++Q+ELKQIL S+++    S+E+
Sbjct: 61  KKKKKVVRFNLNEENSGDDRSGKQGESKNGVVRIRLVVTQEELKQILSSKKDLRQSSMEQ 120

Query: 121 LIEELKVKG-RATTVSADETGSWKPALECIPE 141
           LI+ +K++G R +       G+W+PALE IPE
Sbjct: 121 LIKAVKLRGVRVSEDGRTSDGAWRPALESIPE 151

[Close]

BLAST of CsaV3_2G034970 vs. ExPASy TrEMBL
Match: A0A7J8UDX0 (Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_016289 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.0e-12
Identity = 59/152 (38.82%), Postives = 86/152 (56.58%), Query Frame = 0


Query: 1   MGNICFKSNKVMAQDDSYDDF---PPHHLIEPK-KVQQQPLPGSAMAKPKNGTG-----G 60
           MGN CF SNK++A++D         P+ LI+    V      G+A     N         
Sbjct: 1   MGN-CFTSNKILAENDDLQGCSCNQPNQLIKDMGDVTVSKSEGAADGVKTNNNNMENETN 60

Query: 61  AAGKKVVRFNLQEEEK-DEEGRNSGDSGPGVLRIKVVISQKELKQILKSREN-NSCSLEE 120
              KKVVRFNL EE   D+     G+S  GV+RI++V++Q+ELKQIL S+++    S+E+
Sbjct: 61  KKKKKVVRFNLNEENSGDDRSGKQGESKNGVVRIRLVVTQEELKQILSSKKDLRQSSMEQ 120

Query: 121 LIEELKVKG-RATTVSADETGSWKPALECIPE 141
           LI+ +K++G R +       G+W+PALE IPE
Sbjct: 121 LIKAVKLRGVRVSEDGRTSDGAWRPALESIPE 151

[Close]

BLAST of CsaV3_2G034970 vs. TAIR 10
Match: AT3G21680.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.8 bits (120), Expect = 1.1e-06
Identity = 30/80 (37.50%), Postives = 48/80 (60.00%), Query Frame = 0


Query: 68  DEEGRNSGDSGPGVLRIKVVISQKELKQILKSRENNSCSLEELIEELKVKGRATTVSADE 127
           +EE   S +    V+RIKVV+++KEL+QIL   +N   S+++L+  LK  GR  ++++ E
Sbjct: 38  EEESERSTEEESKVVRIKVVVTKKELRQIL-GHKNGINSIQQLVHVLKDSGRNISMASYE 97

Query: 128 TG-------SWKPALECIPE 141
                    +W+P LE IPE
Sbjct: 98  EDEKEEGDENWRPTLESIPE 116

The following BLAST results are available for this feature:

BLAST of CsaV3_2G034970 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63254.1	7.0e-77	100.00	hypothetical protein Csa_022493 [Cucumis sativus]	[more]
TYK24218.1	3.0e-59	84.35	hypothetical protein E5676_scaffold27G00200 [Cucumis melo var. makuwa]	[more]
XP_038902397.1	5.5e-37	66.00	uncharacterized protein LOC120089037 [Benincasa hispida]	[more]
KAG6570883.1	8.7e-35	60.13	hypothetical protein SDJN03_29798, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022140639.1	3.1e-24	51.35	uncharacterized protein LOC111011249 [Momordica charantia]	[more]

BLAST of CsaV3_2G034970 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G034970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQE9	3.4e-77	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418890 PE=4 SV=1	[more]
A0A5D3DKZ8	1.4e-59	84.35	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1CG85	1.5e-24	51.35	uncharacterized protein LOC111011249 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A0D2SHC7	1.0e-12	38.82	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G149800 PE=4 ...	[more]
A0A7J8UDX0	1.0e-12	38.82	Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_016289 PE=4...	[more]

BLAST of CsaV3_2G034970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G21680.1	1.1e-06	37.50	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..55
None	No IPR available	PANTHER	PTHR33148	PLASTID MOVEMENT IMPAIRED PROTEIN-RELATED	coord: 1..141
None	No IPR available	PANTHER	PTHR33148:SF55	OS01G0219300 PROTEIN	coord: 1..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G034970.1	CsaV3_2G034970.1	mRNA