CsaV3_2G034630 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G034630
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Glycine-rich RNA-binding protein 3
Location	chr2: 23021971 .. 23024105 (+)
RNA-Seq Expression	CsaV3_2G034630
Synteny	CsaV3_2G034630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATGATGTTTGTATTTGTAATAATAGCAAACACTCGATCACAAGCAATAACCAATGCAACGATGAGCAACACCAACACCTTCCTACTGCTTGCCAGAAAAGCACTAACCAATATCCAAACTCCATTTCTTGGCTTTCGTTGCTTCTGTTCTCAATCCACCTCCCCTCTCTCATCTTCTCCTTCTCCAAACAATAAGCTCTTCGTAGCAGGTTCACGTCTCCTCCTCAATCCAATCACACACCGATGCACCACCCACTTGATTCAGATGGCTTGTACGTTCATGAATTTGATCTTCTTTCTTCCTTTTCCTTCCAGGCTTGTCTTGGTCAATGGACGAGAGATCATTGAAAGATGCCTTTTCTTCCTTTGGGGAGGTTACTGAAGGTAATCGTGCATGTTGAGCTTAACCCTTTGATTTACGAGTTGTAGTCTACATGTTCGATGAAATGTCTAGTCGATTTCAGACCTCAGTTCAACACGTGTGCTTCTGGGTCGAAACATTTTGCTTCCTTGACATTCATGATTCCAAGGTTTTTCTTTTAAAACCAAATCTTGTTTCATTGAAGTTTCTTATTCTATAATTCTTGTAACGAGAATGAAAATGAGTTTTGAGATGTTTAGGATTTAGGAGCGTTTTGTTTTGTAGCGTTTTACTATGCTTTTGTGATTTTCTTGGAATATTGAGACAACAAAACAATGAGAAATATAGAGATTGAAGTAATAAAGAATTTGAGAGGCGGGAAACTAGAATTTATATATGAGTTCAAAGAAATTGATGTCCATTGGTAATCACTCTGGAACTTCACCAACAAAATAGCTTATGAGGATGGAGTTCATTTGATAAAGTTTAGATGAAATTGCATGACCATTTTGAAACTTCAGTGGTGATCACTAGTCTATAGGAACATTAATGTCCTGTGTCGATTGGTGATTAAAGATCAGTCTTAAAGACTGAAACTTTGCCAGCAAAATAACTTATGGTGGAGATGGAGTTCATTTGATCAATAAGATGAAACTGAATGGTCAATGTGAAACTCTCGTGGTGATCACTAAAGGAACTTTGATGCCCATTGGTGATCACTCTGAAAACGTCACCAGCAAATATCCTATGGGTTTCATTTGGTACAGTTGGGATAAAATCCAATGACCACTGAAACTCCAGTGATCATCACTTTACAAATTTTGATATCCAGTGGTGATCACTCTGAAACTTCATCAGAATTGCTTATTGAGTTGAGGTCTTATGTTAAGATTTGAATAGCTTATGTGTTTTCTTGACAGTTAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGTTTCGGATTTGTGAACTTCGCAAATGGAAATGATGCCCAGTGTGCAAAAGATGCAATGGACGGAAAGGCAAGTCATTAATTTATAAGAAGTAGTTTGATAAGGTTTAGTCTGTCAATCATAAATTACTCAAAATGAAAGTCATCACGTTACTTGCAGGCAGTATTAGGGCGGCCATTGAGAATAAGCTTTGCCCTTGACAAGGTCCGTGGAGAACCTGTTGTTGTTCCTCGACTTTCAAACATCAACAACCTTGTGGGTCGAAGGTCTTAAAGCTCTTGGTGTTCCATCTACATGTTGCATGAATCTCTAATCTTGAACTGTTCAATTCCTACTTCTAAATCTGATTTAGATCCTTGACTTGGTTTTCCAGGTATGGAAACCAACAGTATGAAGGAACCTCAAGTTAGTATTGTTTGATAATCGCAGAGAAATATGATATCAATTTCTTTATTTGTATGCTCCTATATCCAAATATTTGGAAGAGACGAGGGAACAAAATTCCTGTAGCAGTAATCATGATTTATTTTTTATCAAGTCATGATAGATAGTTCCCAATTTCTTTTATTAGAAATCTTGTTTTCTATCTTAGTAGTATCTTTGTCC

mRNA sequence

ATGATGTTTGTATTTGTAATAATAGCAAACACTCGATCACAAGCAATAACCAATGCAACGATGAGCAACACCAACACCTTCCTACTGCTTGCCAGAAAAGCACTAACCAATATCCAAACTCCATTTCTTGGCTTTCGTTGCTTCTGTTCTCAATCCACCTCCCCTCTCTCATCTTCTCCTTCTCCAAACAATAAGCTCTTCGTAGCAGGCTTGTCTTGGTCAATGGACGAGAGATCATTGAAAGATGCCTTTTCTTCCTTTGGGGAGGTTACTGAAGTTAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGTTTCGGATTTGTGAACTTCGCAAATGGAAATGATGCCCAGTGTGCAAAAGATGCAATGGACGGAAAGGCAGTATTAGGGCGGCCATTGAGAATAAGCTTTGCCCTTGACAAGGTCCGTGGAGAACCTGTTGTTGTTCCTCGACTTTCAAACATCAACAACCTTGTGGGTCGAAGGTATGGAAACCAACAGTATGAAGGAACCTCAAGTTAG

Coding sequence (CDS)

ATGATGTTTGTATTTGTAATAATAGCAAACACTCGATCACAAGCAATAACCAATGCAACGATGAGCAACACCAACACCTTCCTACTGCTTGCCAGAAAAGCACTAACCAATATCCAAACTCCATTTCTTGGCTTTCGTTGCTTCTGTTCTCAATCCACCTCCCCTCTCTCATCTTCTCCTTCTCCAAACAATAAGCTCTTCGTAGCAGGCTTGTCTTGGTCAATGGACGAGAGATCATTGAAAGATGCCTTTTCTTCCTTTGGGGAGGTTACTGAAGTTAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGTTTCGGATTTGTGAACTTCGCAAATGGAAATGATGCCCAGTGTGCAAAAGATGCAATGGACGGAAAGGCAGTATTAGGGCGGCCATTGAGAATAAGCTTTGCCCTTGACAAGGTCCGTGGAGAACCTGTTGTTGTTCCTCGACTTTCAAACATCAACAACCTTGTGGGTCGAAGGTATGGAAACCAACAGTATGAAGGAACCTCAAGTTAG

Protein sequence

MMFVFVIIANTRSQAITNATMSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPSPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRRYGNQQYEGTSS*

Homology

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BLAST of CsaV3_2G034630 vs. NCBI nr
Match: XP_031736490.1 (glycine-rich RNA-binding protein 4, mitochondrial [Cucumis sativus] >KAE8652277.1 hypothetical protein Csa_021792 [Cucumis sativus])

HSP 1 Score: 344.4 bits (882), Expect = 6.0e-91
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 1   MMFVFVIIANTRSQAITNATMSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSP 60
           MMFVFVIIANTRSQAITNATMSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSP
Sbjct: 1   MMFVFVIIANTRSQAITNATMSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSP 60

Query: 61  SPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQC 120
           SPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQC
Sbjct: 61  SPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQC 120

Query: 121 AKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRRYGNQQYEGTSS 176
           AKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRRYGNQQYEGTSS
Sbjct: 121 AKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRRYGNQQYEGTSS 175

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BLAST of CsaV3_2G034630 vs. NCBI nr
Match: XP_008455929.1 (PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Cucumis melo])

HSP 1 Score: 275.4 bits (703), Expect = 3.4e-70
Identity = 147/164 (89.63%), Postives = 152/164 (92.68%), Query Frame = 0


Query: 2   MFVFVIIANTRSQAITNATMSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPS 61
           M VFV I+ TRSQAITNA MSNTNT LLLARKALTNIQTP L FRCFCSQSTS LSSSPS
Sbjct: 1   MSVFV-ISKTRSQAITNAMMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPS 60

Query: 62  -PNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQC 121
            P+NKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFV+FAN NDAQC
Sbjct: 61  APSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQC 120

Query: 122 AKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRR 165
           AKDAMDGKAVLGRPL+ISFAL+KVRG PV VPRLSNINNLVGRR
Sbjct: 121 AKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRR 163

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BLAST of CsaV3_2G034630 vs. NCBI nr
Match: KAA0034781.1 (glycine-rich RNA-binding protein 3 [Cucumis melo var. makuwa] >TYK09579.1 glycine-rich RNA-binding protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 246.9 bits (629), Expect = 1.3e-61
Identity = 130/145 (89.66%), Postives = 134/145 (92.41%), Query Frame = 0


Query: 21  MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPS-PNNKLFVAGLSWSMDERS 80
           MSNTNT LLLARKALTNIQTP L FRCFCSQSTS LSSSPS P+NKLFVAGLSWSMDERS
Sbjct: 2   MSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDERS 61

Query: 81  LKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISF 140
           LKDAFSSFGEVTEVRIVYDKDSGRSRGFGFV+FAN NDAQCAKDAMDGKA   RPL+ISF
Sbjct: 62  LKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKA--RRPLKISF 121

Query: 141 ALDKVRGEPVVVPRLSNINNLVGRR 165
           AL+KVRG PV VPRLSNINNLVGRR
Sbjct: 122 ALEKVRGGPVAVPRLSNINNLVGRR 144

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BLAST of CsaV3_2G034630 vs. NCBI nr
Match: XP_022986397.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 241.5 bits (615), Expect = 5.5e-60
Identity = 123/149 (82.55%), Postives = 133/149 (89.26%), Query Frame = 0


Query: 21  MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPS-----PNNKLFVAGLSWSM 80
           MSN N  +LLAR+ALTNIQTP L FRCFCSQS+S  SS+PS     PNNKLFVAGLSWS+
Sbjct: 2   MSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWSL 61

Query: 81  DERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPL 140
           DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNF N +DAQ AKDAMDGKA+LGRPL
Sbjct: 62  DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRPL 121

Query: 141 RISFALDKVRGEPVVVPRLSNINNLVGRR 165
           RISFALDKVRG PVVVPRLSNINN++GRR
Sbjct: 122 RISFALDKVRGGPVVVPRLSNINNVLGRR 150

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BLAST of CsaV3_2G034630 vs. NCBI nr
Match: XP_023512965.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238.0 bits (606), Expect = 6.0e-59
Identity = 122/149 (81.88%), Postives = 132/149 (88.59%), Query Frame = 0


Query: 21  MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPS-----PNNKLFVAGLSWSM 80
           MSNTNT + L R+ALTNIQTP L FRCFCSQS+S  SS+PS     PNNKLFVAGLSWS+
Sbjct: 2   MSNTNTLMPLFRRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSWSL 61

Query: 81  DERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPL 140
           DERSLKDAFSS+GEVTEVRI+YDKDSGRSRGFGFVNF N +DAQ AKDAMDGKA+LGRPL
Sbjct: 62  DERSLKDAFSSYGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRPL 121

Query: 141 RISFALDKVRGEPVVVPRLSNINNLVGRR 165
           RISFALDKVRG PVVVPRLSNINN+ GRR
Sbjct: 122 RISFALDKVRGGPVVVPRLSNINNVFGRR 150

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BLAST of CsaV3_2G034630 vs. ExPASy Swiss-Prot
Match: Q9LIS2 (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.1e-18
Identity = 46/91 (50.55%), Postives = 64/91 (70.33%), Query Frame = 0


Query: 53  TSPLSSSPSPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNF 112
           TS L S    ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV+F
Sbjct: 24  TSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSF 83

Query: 113 ANGNDAQCAKDAMDGKAVLGRPLRISFALDK 144
           +  + A  A   MDGK + GR +R++ A ++
Sbjct: 84  SCEDSANNAIKEMDGKELNGRQIRVNLATER 114

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BLAST of CsaV3_2G034630 vs. ExPASy Swiss-Prot
Match: Q9SVM8 (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG2 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.7e-17
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 53  TSPLSSSPSPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNF 112
           TS L S    + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF
Sbjct: 24  TSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83

Query: 113 ANGNDAQCAKDAMDGKAVLGRPLRISFALDK 144
            +   A  A   MDGK + GR +R++ A D+
Sbjct: 84  NDEGAATAAISEMDGKELNGRHIRVNPANDR 114

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BLAST of CsaV3_2G034630 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.9e-17
Identity = 37/84 (44.05%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 63  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAK 122
           ++KLF+ G+++SMDE SL++AF+ +GEV + R++ D+++GRSRGFGFV F +   A  A 
Sbjct: 39  SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98

Query: 123 DAMDGKAVLGRPLRISFALDKVRG 147
            A+DG+ + GR +++++A D+  G
Sbjct: 99  QALDGRDLHGRVVKVNYANDRTSG 122

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BLAST of CsaV3_2G034630 vs. ExPASy Swiss-Prot
Match: W8E7I1 (RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2)

HSP 1 Score: 83.6 bits (205), Expect = 2.5e-15
Identity = 41/86 (47.67%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 61  SPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQC 120
           S   KLFV GL+++ DER+L+D FSSFG ++EV +V D+++ RSRGFGF+ F N   A  
Sbjct: 3   SEEGKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASN 62

Query: 121 AKDAMDGKAVLGRPLRISFALDKVRG 147
           A  AM+G+++ GR +R+  A    RG
Sbjct: 63  AMRAMNGESLDGRQIRVDHAGKSARG 88

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BLAST of CsaV3_2G034630 vs. ExPASy Swiss-Prot
Match: P98179 (RNA-binding protein 3 OS=Homo sapiens OX=9606 GN=RBM3 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.3e-15
Identity = 40/86 (46.51%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 61  SPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQC 120
           S   KLFV GL+++ DE++L+D FSSFG ++EV +V D+++ RSRGFGF+ F N   A  
Sbjct: 3   SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASV 62

Query: 121 AKDAMDGKAVLGRPLRISFALDKVRG 147
           A  AM+G+++ GR +R+  A    RG
Sbjct: 63  AMRAMNGESLDGRQIRVDHAGKSARG 88

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BLAST of CsaV3_2G034630 vs. ExPASy TrEMBL
Match: A0A0A0LQB7 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G416100 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 4.6e-81
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 21  MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPSPNNKLFVAGLSWSMDERSL 80
           MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPSPNNKLFVAGLSWSMDERSL
Sbjct: 1   MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPSPNNKLFVAGLSWSMDERSL 60

Query: 81  KDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFA 140
           KDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFA
Sbjct: 61  KDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFA 120

Query: 141 LDKVRGEPVVVPRLSNINNLVGRRYGNQQYEGTSS 176
           LDKVRGEPVVVPRLSNINNLVGRRYGNQQYEGTSS
Sbjct: 121 LDKVRGEPVVVPRLSNINNLVGRRYGNQQYEGTSS 155

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BLAST of CsaV3_2G034630 vs. ExPASy TrEMBL
Match: A0A1S3C2R4 (glycine-rich RNA-binding protein 3, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103495992 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.6e-70
Identity = 147/164 (89.63%), Postives = 152/164 (92.68%), Query Frame = 0


Query: 2   MFVFVIIANTRSQAITNATMSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPS 61
           M VFV I+ TRSQAITNA MSNTNT LLLARKALTNIQTP L FRCFCSQSTS LSSSPS
Sbjct: 1   MSVFV-ISKTRSQAITNAMMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPS 60

Query: 62  -PNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQC 121
            P+NKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFV+FAN NDAQC
Sbjct: 61  APSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQC 120

Query: 122 AKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRR 165
           AKDAMDGKAVLGRPL+ISFAL+KVRG PV VPRLSNINNLVGRR
Sbjct: 121 AKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRR 163

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BLAST of CsaV3_2G034630 vs. ExPASy TrEMBL
Match: A0A5D3CH06 (Glycine-rich RNA-binding protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold458G00050 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 6.3e-62
Identity = 130/145 (89.66%), Postives = 134/145 (92.41%), Query Frame = 0


Query: 21  MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPS-PNNKLFVAGLSWSMDERS 80
           MSNTNT LLLARKALTNIQTP L FRCFCSQSTS LSSSPS P+NKLFVAGLSWSMDERS
Sbjct: 2   MSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDERS 61

Query: 81  LKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISF 140
           LKDAFSSFGEVTEVRIVYDKDSGRSRGFGFV+FAN NDAQCAKDAMDGKA   RPL+ISF
Sbjct: 62  LKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKA--RRPLKISF 121

Query: 141 ALDKVRGEPVVVPRLSNINNLVGRR 165
           AL+KVRG PV VPRLSNINNLVGRR
Sbjct: 122 ALEKVRGGPVAVPRLSNINNLVGRR 144

[Close]

BLAST of CsaV3_2G034630 vs. ExPASy TrEMBL
Match: A0A6J1J7F1 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111484146 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.6e-60
Identity = 123/149 (82.55%), Postives = 133/149 (89.26%), Query Frame = 0


Query: 21  MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPS-----PNNKLFVAGLSWSM 80
           MSN N  +LLAR+ALTNIQTP L FRCFCSQS+S  SS+PS     PNNKLFVAGLSWS+
Sbjct: 2   MSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWSL 61

Query: 81  DERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPL 140
           DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNF N +DAQ AKDAMDGKA+LGRPL
Sbjct: 62  DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRPL 121

Query: 141 RISFALDKVRGEPVVVPRLSNINNLVGRR 165
           RISFALDKVRG PVVVPRLSNINN++GRR
Sbjct: 122 RISFALDKVRGGPVVVPRLSNINNVLGRR 150

[Close]

BLAST of CsaV3_2G034630 vs. ExPASy TrEMBL
Match: A0A6J1FYH8 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111448693 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 5.5e-58
Identity = 121/149 (81.21%), Postives = 131/149 (87.92%), Query Frame = 0


Query: 21  MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPS-----PNNKLFVAGLSWSM 80
           MSN N  +LLAR+ALTNIQTP L FRCFCSQS+S  SS+PS     PNNKLFVAGLSWS+
Sbjct: 2   MSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWSL 61

Query: 81  DERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPL 140
           DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNF N +DAQ AKDAMDGKA+LGRPL
Sbjct: 62  DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRPL 121

Query: 141 RISFALDKVRGEPVVVPRLSNINNLVGRR 165
           RISFALDKVRG PVV+PRLSNI N+ GRR
Sbjct: 122 RISFALDKVRGGPVVIPRLSNI-NMFGRR 149

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BLAST of CsaV3_2G034630 vs. TAIR 10
Match: AT3G08000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 155.6 bits (392), Expect = 3.7e-38
Identity = 77/98 (78.57%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 57  SSSPSPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGN 116
           SSS SP++KLF+ GLSWS+DE+SLKDAFSSFGEV EVRI YDK SGRSRGFGFV+FA   
Sbjct: 34  SSSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEG 93

Query: 117 DAQCAKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRL 155
           DA  AKDAMDGK +LGRPLRISFAL++VRG PVVVPRL
Sbjct: 94  DALSAKDAMDGKGLLGRPLRISFALERVRGGPVVVPRL 131

[Close]

BLAST of CsaV3_2G034630 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 93.2 bits (230), Expect = 2.2e-19
Identity = 46/91 (50.55%), Postives = 64/91 (70.33%), Query Frame = 0


Query: 53  TSPLSSSPSPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNF 112
           TS L S    ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV+F
Sbjct: 24  TSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSF 83

Query: 113 ANGNDAQCAKDAMDGKAVLGRPLRISFALDK 144
           +  + A  A   MDGK + GR +R++ A ++
Sbjct: 84  SCEDSANNAIKEMDGKELNGRQIRVNLATER 114

[Close]

BLAST of CsaV3_2G034630 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 93.2 bits (230), Expect = 2.2e-19
Identity = 46/91 (50.55%), Postives = 64/91 (70.33%), Query Frame = 0


Query: 53  TSPLSSSPSPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNF 112
           TS L S    ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV+F
Sbjct: 24  TSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSF 83

Query: 113 ANGNDAQCAKDAMDGKAVLGRPLRISFALDK 144
           +  + A  A   MDGK + GR +R++ A ++
Sbjct: 84  SCEDSANNAIKEMDGKELNGRQIRVNLATER 114

[Close]

BLAST of CsaV3_2G034630 vs. TAIR 10
Match: AT4G13850.4 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 91.3 bits (225), Expect = 8.5e-19
Identity = 44/94 (46.81%), Postives = 63/94 (67.02%), Query Frame = 0


Query: 53  TSPLSSSPSPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNF 112
           TS L S    + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF
Sbjct: 24  TSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83

Query: 113 ANGNDAQCAKDAMDGKAVLGRPLRISFALDKVRG 147
            +   A  A   MDGK + GR +R++ A D+  G
Sbjct: 84  NDEGAATAAISEMDGKELNGRHIRVNPANDRPSG 117

[Close]

BLAST of CsaV3_2G034630 vs. TAIR 10
Match: AT4G13850.1 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 90.1 bits (222), Expect = 1.9e-18
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 53  TSPLSSSPSPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNF 112
           TS L S    + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF
Sbjct: 24  TSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83

Query: 113 ANGNDAQCAKDAMDGKAVLGRPLRISFALDK 144
            +   A  A   MDGK + GR +R++ A D+
Sbjct: 84  NDEGAATAAISEMDGKELNGRHIRVNPANDR 114

The following BLAST results are available for this feature:

BLAST of CsaV3_2G034630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031736490.1	6.0e-91	100.00	glycine-rich RNA-binding protein 4, mitochondrial [Cucumis sativus] >KAE8652277....	[more]
XP_008455929.1	3.4e-70	89.63	PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Cucumis melo]	[more]
KAA0034781.1	1.3e-61	89.66	glycine-rich RNA-binding protein 3 [Cucumis melo var. makuwa] >TYK09579.1 glycin...	[more]
XP_022986397.1	5.5e-60	82.55	glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima]	[more]
XP_023512965.1	6.0e-59	81.88	glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pe...	[more]

BLAST of CsaV3_2G034630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LIS2	3.1e-18	50.55	Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9SVM8	2.7e-17	47.25	Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9FNR1	5.9e-17	44.05	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
W8E7I1	2.5e-15	47.67	RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2	[more]
P98179	4.3e-15	46.51	RNA-binding protein 3 OS=Homo sapiens OX=9606 GN=RBM3 PE=1 SV=1	[more]

BLAST of CsaV3_2G034630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQB7	4.6e-81	100.00	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G416100 PE=4 SV...	[more]
A0A1S3C2R4	1.6e-70	89.63	glycine-rich RNA-binding protein 3, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A5D3CH06	6.3e-62	89.66	Glycine-rich RNA-binding protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A6J1J7F1	2.6e-60	82.55	glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita maxima OX=36...	[more]
A0A6J1FYH8	5.5e-58	81.21	glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita moschata OX=...	[more]

BLAST of CsaV3_2G034630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08000.1	3.7e-38	78.57	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G23830.1	2.2e-19	50.55	glycine-rich RNA-binding protein 4	[more]
AT3G23830.2	2.2e-19	50.55	glycine-rich RNA-binding protein 4	[more]
AT4G13850.4	8.5e-19	46.81	glycine-rich RNA-binding protein 2	[more]
AT4G13850.1	1.9e-18	47.25	glycine-rich RNA-binding protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 65..138 e-value: 9.9E-26 score: 101.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 66..136 e-value: 1.1E-20 score: 73.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 64..142 score: 20.235266
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 50..175 e-value: 1.1E-30 score: 108.5
None	No IPR available	PANTHER	PTHR15241:SF334	GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL	coord: 28..158
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 28..158
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 48..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G034630.1	CsaV3_2G034630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding