CsaV3_2G034300 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G034300
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Coilin
Location	chr2: 22718271 .. 22720061 (+)
RNA-Seq Expression	CsaV3_2G034300
Synteny	CsaV3_2G034300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCCACCTTGTGAACAAGATGAGGACCATCAGAGGATCTACCATGTGATTCATATGGTATAAGTTGTCTGACACAGCTGGTGAAAGTAAAAAGGTTTGTATTTTATGGGAATTGTTTACTATTACTCTCATCATTATATGGCTGTTAAAAATTGTGGTTATTTGTTAGCAGTTTTTACCATTTTTAATTTTGATGTTAATTACACTTGTAGAATGTAGTTTTTTCCGTTTGGAATGACTGCTTGTACTTTGGATTAGTTATATACGTCAGTATAGTATCTTTAATTATGATAAATTTGCTTCTAAAAGATATATCAGATCTGATTCATTTTGATCTGTCAAAATTTTTGTGTTTTGTTTTTTTATTGCTGTTGCTGCTATCAAAGTATAGCTTTAGGCGAGTATAGAGAATGAAATAGAATTTCAGTTTCAACTTTGTTGTTTCATTTTGTTTGATTTTAGCAACAGAGAACGTAACGAAATACTTTGAAATTCATAACTAGATCCAAGGATTTTCAATCTTTTCAGATAGTTACTGTTTTCAATTGTTCTATTTTGGTGGCTGTGTTATCATTCATCTAACTTATTGTGCTTGTATTCTTTTCTTTCTTGTCAGGTTCCTAGTAGAAGTACTCGCCGTAAGAAGACAAAAAGGCGTTGGTTGAGGGAAAGAGCTCAAAATGAAGAGGTAAATTTATGTCCCAAATGGCAGTTTTTCATTTCAAATATGTGTATTGTGTCCTGGGGGTGGGTATAAATTTCTTCTTTGTTGAAAACAACTGTCATGTATCTATTATTTATTTTTATCATTTTGAACGTGTAAAGCTGAAGCTCTACTTGGTTTTATCATACATATAGTTCATGTGTATGTCCTACTGAATTGACAAAAATGCTCATGTATTATTAGAATAGCATTGGCAAATATGCTCATAACTCTCTTGAGGTGTAGATGCCTGATAACTATATTTTTTGCAGCAACAGCAACAGTTATTTGAAACAAGTTTAGAACAAGGGCCAAGTCCAAATGATGATGTTGATATGGATGATGACACTGTTCCTGTGGTAGTTAAGCCAGGTCACATTCGATTTGAGCCAGTTGGAAAAGGTTGGGTGATTTCTTTCTATTTTAGACTCGGTATGCTTTGGCATTGATAGGAACAGTTTTTAAGGTCCAAAAGGGGGTGGGATATCTTGTGTATGCTTTCTTGTTATATTTGTTTGATTTCAACTTTTACATGGATCACACAATTATGATTTTCATGATTGCCCTTATATTTCATTACAGTTGTGACGGATCAGGCTGGGCAGGAAAAGCAAAACCATTTCCTTAAGGTATCCGTGATGTTCCAATATGGCAATATCTTATTCTGTCTCTTGAAGTTCACTGAAGCCAATTATTGTTGATTTGTTGTGATTTAGGAAACATTGCATTGGAATGGCATCACCAACAAGAAGAAGGGCCAAAAATGGGGCAAAGAGAAAAGTCCATCTTGGAAGAGGAACAATTCTAACGATTGTAGCAGCGAACCTCTTCAATTACTTTCTGAAACTGAGCAACCTAAAACTCCGGTTCCTGTAGTTGGTTCAATACATTTTGATGAACTTCCACCGTACACTGGCTTGCCTCAGGTTTGGTTTGCACAGATAGCTTCCATTTGCTTTCTTAAGTGTTTAGTTGGGCATGCACGTTTTGCGAAGTGGAATAATCAAGTCACGTTAGCAGTTCTCATTAAATTACATTTTTCATTTCCCAAGTCCCAACTTATTCTTTATGGCCCAATTTCATAA

mRNA sequence

ATGGGTCCACCTTGTGAACAAGATGAGGACCATCAGAGGATCTACCATGTGATTCATATGGTTCCTAGTAGAAGTACTCGCCGTAAGAAGACAAAAAGGCGTTGGTTGAGGGAAAGAGCTCAAAATGAAGAGCAACAGCAACAGTTATTTGAAACAAGTTTAGAACAAGGGCCAAGTCCAAATGATGATGTTGATATGGATGATGACACTGTTCCTGTGGTAGTTAAGCCAGGTCACATTCGATTTGAGCCAGTTGGAAAAGTTGTGACGGATCAGGCTGGGCAGGAAAAGCAAAACCATTTCCTTAAGGAAACATTGCATTGGAATGGCATCACCAACAAGAAGAAGGGCCAAAAATGGGGCAAAGAGAAAAGTCCATCTTGGAAGAGGAACAATTCTAACGATTGTAGCAGCGAACCTCTTCAATTACTTTCTGAAACTGAGCAACCTAAAACTCCGGTTCCTGTAGTTGGTTCAATACATTTTGATGAACTTCCACCGTACACTGGCTTGCCTCAGGTTTGGTTTGCACAGATAGCTTCCATTTGCTTTCTTAAGTGTTTAGTTGGGCATGCACGTTTTGCGAAGTGGAATAATCAAGTCACGTTAGCAGTTCTCATTAAATTACATTTTTCATTTCCCAAGTCCCAACTTATTCTTTATGGCCCAATTTCATAA

Coding sequence (CDS)

ATGGGTCCACCTTGTGAACAAGATGAGGACCATCAGAGGATCTACCATGTGATTCATATGGTTCCTAGTAGAAGTACTCGCCGTAAGAAGACAAAAAGGCGTTGGTTGAGGGAAAGAGCTCAAAATGAAGAGCAACAGCAACAGTTATTTGAAACAAGTTTAGAACAAGGGCCAAGTCCAAATGATGATGTTGATATGGATGATGACACTGTTCCTGTGGTAGTTAAGCCAGGTCACATTCGATTTGAGCCAGTTGGAAAAGTTGTGACGGATCAGGCTGGGCAGGAAAAGCAAAACCATTTCCTTAAGGAAACATTGCATTGGAATGGCATCACCAACAAGAAGAAGGGCCAAAAATGGGGCAAAGAGAAAAGTCCATCTTGGAAGAGGAACAATTCTAACGATTGTAGCAGCGAACCTCTTCAATTACTTTCTGAAACTGAGCAACCTAAAACTCCGGTTCCTGTAGTTGGTTCAATACATTTTGATGAACTTCCACCGTACACTGGCTTGCCTCAGGTTTGGTTTGCACAGATAGCTTCCATTTGCTTTCTTAAGTGTTTAGTTGGGCATGCACGTTTTGCGAAGTGGAATAATCAAGTCACGTTAGCAGTTCTCATTAAATTACATTTTTCATTTCCCAAGTCCCAACTTATTCTTTATGGCCCAATTTCATAA

Protein sequence

MGPPCEQDEDHQRIYHVIHMVPSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDVDMDDDTVPVVVKPGHIRFEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQVWFAQIASICFLKCLVGHARFAKWNNQVTLAVLIKLHFSFPKSQLILYGPIS*

Homology

[Close]

BLAST of CsaV3_2G034300 vs. NCBI nr
Match: KAE8652266.1 (hypothetical protein Csa_022487 [Cucumis sativus])

HSP 1 Score: 463.8 bits (1192), Expect = 8.7e-127
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MGPPCEQDEDHQRIYHVIHMVPSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSP 60
           MGPPCEQDEDHQRIYHVIHMVPSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSP
Sbjct: 1   MGPPCEQDEDHQRIYHVIHMVPSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSP 60

Query: 61  NDDVDMDDDTVPVVVKPGHIRFEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKW 120
           NDDVDMDDDTVPVVVKPGHIRFEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKW
Sbjct: 61  NDDVDMDDDTVPVVVKPGHIRFEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKW 120

Query: 121 GKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQVWFAQIA 180
           GKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQVWFAQIA
Sbjct: 121 GKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQVWFAQIA 180

Query: 181 SICFLKCLVGHARFAKWNNQVTLAVLIKLHFSFPKSQLILYGPIS 226
           SICFLKCLVGHARFAKWNNQVTLAVLIKLHFSFPKSQLILYGPIS
Sbjct: 181 SICFLKCLVGHARFAKWNNQVTLAVLIKLHFSFPKSQLILYGPIS 225

[Close]

BLAST of CsaV3_2G034300 vs. NCBI nr
Match: XP_031736546.1 (coilin-like isoform X1 [Cucumis sativus] >XP_031736547.1 coilin-like isoform X1 [Cucumis sativus])

HSP 1 Score: 335.9 bits (860), Expect = 2.7e-88
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 66  MDDDTVPVVVKPGHIRFEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKS 125
           MDDDTVPVVVKPGHIRFEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKS
Sbjct: 1   MDDDTVPVVVKPGHIRFEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKS 60

Query: 126 PSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQVWFAQIASICFL 185
           PSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQVWFAQIASICFL
Sbjct: 61  PSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQVWFAQIASICFL 120

Query: 186 KCLVGHARFAKWNNQVTLAVLIKLHFSFPKSQLILYGPIS 226
           KCLVGHARFAKWNNQVTLAVLIKLHFSFPKSQLILYGPIS
Sbjct: 121 KCLVGHARFAKWNNQVTLAVLIKLHFSFPKSQLILYGPIS 160

[Close]

BLAST of CsaV3_2G034300 vs. NCBI nr
Match: XP_031741125.1 (coilin isoform X1 [Cucumis sativus] >KGN52354.2 hypothetical protein Csa_007787 [Cucumis sativus])

HSP 1 Score: 295.4 bits (755), Expect = 4.1e-76
Identity = 147/153 (96.08%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 21  VPSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDVDMDDDTVPVVVKPGHI 80
           VPSRSTRRKK KRRWLRERAQNEEQQQQLFETSLEQGPS NDDVDMDDDTVPVVVKPGHI
Sbjct: 273 VPSRSTRRKKAKRRWLRERAQNEEQQQQLFETSLEQGPSQNDDVDMDDDTVPVVVKPGHI 332

Query: 81  RFEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKRNNSNDCSSEP 140
           RFEPVGKVVTDQAGQEKQNHF KETLHWNGITNKKKGQKWGKEK+PSWKRNNSNDCSSEP
Sbjct: 333 RFEPVGKVVTDQAGQEKQNHFPKETLHWNGITNKKKGQKWGKEKTPSWKRNNSNDCSSEP 392

Query: 141 LQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ 174
           LQLLSETEQPKTPVPVVGSI+FDEL PYTGLPQ
Sbjct: 393 LQLLSETEQPKTPVPVVGSINFDELRPYTGLPQ 425

[Close]

BLAST of CsaV3_2G034300 vs. NCBI nr
Match: XP_031741126.1 (coilin isoform X2 [Cucumis sativus])

HSP 1 Score: 287.3 bits (734), Expect = 1.1e-73
Identity = 145/153 (94.77%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 21  VPSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDVDMDDDTVPVVVKPGHI 80
           VPSRSTRRKK KRRWLRERAQNEE  QQLFETSLEQGPS NDDVDMDDDTVPVVVKPGHI
Sbjct: 273 VPSRSTRRKKAKRRWLRERAQNEE--QQLFETSLEQGPSQNDDVDMDDDTVPVVVKPGHI 332

Query: 81  RFEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKRNNSNDCSSEP 140
           RFEPVGKVVTDQAGQEKQNHF KETLHWNGITNKKKGQKWGKEK+PSWKRNNSNDCSSEP
Sbjct: 333 RFEPVGKVVTDQAGQEKQNHFPKETLHWNGITNKKKGQKWGKEKTPSWKRNNSNDCSSEP 392

Query: 141 LQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ 174
           LQLLSETEQPKTPVPVVGSI+FDEL PYTGLPQ
Sbjct: 393 LQLLSETEQPKTPVPVVGSINFDELRPYTGLPQ 423

[Close]

BLAST of CsaV3_2G034300 vs. NCBI nr
Match: XP_008446142.1 (PREDICTED: coilin isoform X1 [Cucumis melo])

HSP 1 Score: 285.4 bits (729), Expect = 4.2e-73
Identity = 141/152 (92.76%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 22  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDVDMDDDTVPVVVKPGHIR 81
           PSRSTRRKK KRRWLRERAQNEEQQQQLFET+L+QGPS NDDVDMDDDTVPVVVKPGHIR
Sbjct: 274 PSRSTRRKKAKRRWLRERAQNEEQQQQLFETNLDQGPSQNDDVDMDDDTVPVVVKPGHIR 333

Query: 82  FEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKRNNSNDCSSEPL 141
           FEPVGKVVTDQAGQEK+NHF KETLHWNGITNKKKGQKWGKEK+PSWKRNNSN C+SEPL
Sbjct: 334 FEPVGKVVTDQAGQEKENHFPKETLHWNGITNKKKGQKWGKEKTPSWKRNNSNVCTSEPL 393

Query: 142 QLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ 174
           QLLSETEQPKTPVPVVGSI+FDEL PYTGLPQ
Sbjct: 394 QLLSETEQPKTPVPVVGSINFDELRPYTGLPQ 425

[Close]

BLAST of CsaV3_2G034300 vs. ExPASy Swiss-Prot
Match: Q8RWK8 (Coilin OS=Arabidopsis thaliana OX=3702 GN=COIL PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.8e-13
Identity = 62/177 (35.03%), Postives = 89/177 (50.28%), Query Frame = 0


Query: 22  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDVDMD-------------- 81
           PSRS RRKK KR+WLRE+ + E  +++L +T L   PS    + +D              
Sbjct: 257 PSRSARRKKAKRQWLREKTKLE--KEELLQTQLVVAPSQKPVITIDHQATKEKHCETLEN 316

Query: 82  -----------DDTVPVVVKPGHIRFEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKK 141
                      D+ VPV V+PGHIRF+P+    TD+A  + +   L E + WNG   KKK
Sbjct: 317 QQAEEVSDGFGDEVVPVEVRPGHIRFKPLAG--TDEASLDSEP--LVENVLWNGNMTKKK 376

Query: 142 GQKWGKEKSPSWKR---NNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTG 171
           GQKWG EKS   KR   + + D +++P +  +    P         I +++L  YTG
Sbjct: 377 GQKWGTEKSGFSKRYAQDFNEDATTQPAEAETLANCP---------IDYEQLVAYTG 418

[Close]

BLAST of CsaV3_2G034300 vs. ExPASy TrEMBL
Match: A0A5A7ST29 (Coilin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G002610 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 2.0e-73
Identity = 141/152 (92.76%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 22  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDVDMDDDTVPVVVKPGHIR 81
           PSRSTRRKK KRRWLRERAQNEEQQQQLFET+L+QGPS NDDVDMDDDTVPVVVKPGHIR
Sbjct: 275 PSRSTRRKKAKRRWLRERAQNEEQQQQLFETNLDQGPSQNDDVDMDDDTVPVVVKPGHIR 334

Query: 82  FEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKRNNSNDCSSEPL 141
           FEPVGKVVTDQAGQEK+NHF KETLHWNGITNKKKGQKWGKEK+PSWKRNNSN C+SEPL
Sbjct: 335 FEPVGKVVTDQAGQEKENHFPKETLHWNGITNKKKGQKWGKEKTPSWKRNNSNVCTSEPL 394

Query: 142 QLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ 174
           QLLSETEQPKTPVPVVGSI+FDEL PYTGLPQ
Sbjct: 395 QLLSETEQPKTPVPVVGSINFDELRPYTGLPQ 426

[Close]

BLAST of CsaV3_2G034300 vs. ExPASy TrEMBL
Match: A0A5D3CZQ0 (Coilin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001560 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 2.0e-73
Identity = 141/152 (92.76%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 22  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDVDMDDDTVPVVVKPGHIR 81
           PSRSTRRKK KRRWLRERAQNEEQQQQLFET+L+QGPS NDDVDMDDDTVPVVVKPGHIR
Sbjct: 274 PSRSTRRKKAKRRWLRERAQNEEQQQQLFETNLDQGPSQNDDVDMDDDTVPVVVKPGHIR 333

Query: 82  FEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKRNNSNDCSSEPL 141
           FEPVGKVVTDQAGQEK+NHF KETLHWNGITNKKKGQKWGKEK+PSWKRNNSN C+SEPL
Sbjct: 334 FEPVGKVVTDQAGQEKENHFPKETLHWNGITNKKKGQKWGKEKTPSWKRNNSNVCTSEPL 393

Query: 142 QLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ 174
           QLLSETEQPKTPVPVVGSI+FDEL PYTGLPQ
Sbjct: 394 QLLSETEQPKTPVPVVGSINFDELRPYTGLPQ 425

[Close]

BLAST of CsaV3_2G034300 vs. ExPASy TrEMBL
Match: A0A1S3BF15 (Coilin OS=Cucumis melo OX=3656 GN=LOC103488955 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 2.0e-73
Identity = 141/152 (92.76%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 22  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDVDMDDDTVPVVVKPGHIR 81
           PSRSTRRKK KRRWLRERAQNEEQQQQLFET+L+QGPS NDDVDMDDDTVPVVVKPGHIR
Sbjct: 274 PSRSTRRKKAKRRWLRERAQNEEQQQQLFETNLDQGPSQNDDVDMDDDTVPVVVKPGHIR 333

Query: 82  FEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKRNNSNDCSSEPL 141
           FEPVGKVVTDQAGQEK+NHF KETLHWNGITNKKKGQKWGKEK+PSWKRNNSN C+SEPL
Sbjct: 334 FEPVGKVVTDQAGQEKENHFPKETLHWNGITNKKKGQKWGKEKTPSWKRNNSNVCTSEPL 393

Query: 142 QLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ 174
           QLLSETEQPKTPVPVVGSI+FDEL PYTGLPQ
Sbjct: 394 QLLSETEQPKTPVPVVGSINFDELRPYTGLPQ 425

[Close]

BLAST of CsaV3_2G034300 vs. ExPASy TrEMBL
Match: A0A1S3BF70 (Coilin OS=Cucumis melo OX=3656 GN=LOC103488955 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 5.6e-71
Identity = 139/152 (91.45%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 22  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDVDMDDDTVPVVVKPGHIR 81
           PSRSTRRKK KRRWLRERAQNEE  QQLFET+L+QGPS NDDVDMDDDTVPVVVKPGHIR
Sbjct: 274 PSRSTRRKKAKRRWLRERAQNEE--QQLFETNLDQGPSQNDDVDMDDDTVPVVVKPGHIR 333

Query: 82  FEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKRNNSNDCSSEPL 141
           FEPVGKVVTDQAGQEK+NHF KETLHWNGITNKKKGQKWGKEK+PSWKRNNSN C+SEPL
Sbjct: 334 FEPVGKVVTDQAGQEKENHFPKETLHWNGITNKKKGQKWGKEKTPSWKRNNSNVCTSEPL 393

Query: 142 QLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ 174
           QLLSETEQPKTPVPVVGSI+FDEL PYTGLPQ
Sbjct: 394 QLLSETEQPKTPVPVVGSINFDELRPYTGLPQ 423

[Close]

BLAST of CsaV3_2G034300 vs. ExPASy TrEMBL
Match: A0A6J1H0F7 (Coilin OS=Cucurbita moschata OX=3662 GN=LOC111458457 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 7.8e-65
Identity = 129/153 (84.31%), Postives = 137/153 (89.54%), Query Frame = 0


Query: 22  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDVDMDDDTVPVVVKPGHIR 81
           PSRSTRRKK KR+WLRERAQ+EEQQQQLFETS+ QGPS NDDVDMD+DTVPVVVKPGHIR
Sbjct: 263 PSRSTRRKKAKRQWLRERAQSEEQQQQLFETSIYQGPSHNDDVDMDEDTVPVVVKPGHIR 322

Query: 82  FEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKRNNSNDCSSEPL 141
           FEPVGKV  D AGQ+KQNHF KETLHWNGITNKKKGQKWGKEK+PSWKRNNSN C+ EPL
Sbjct: 323 FEPVGKVAADPAGQQKQNHFPKETLHWNGITNKKKGQKWGKEKTPSWKRNNSNSCTDEPL 382

Query: 142 QL-LSETEQPKTPVPVVGSIHFDELPPYTGLPQ 174
           QL  SETEQP TP PVVG I+FDEL P TGLPQ
Sbjct: 383 QLPTSETEQPTTPAPVVGPINFDELRPCTGLPQ 415

[Close]

BLAST of CsaV3_2G034300 vs. TAIR 10
Match: AT1G13030.1 (sphere organelles protein-related )

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-14
Identity = 62/177 (35.03%), Postives = 89/177 (50.28%), Query Frame = 0


Query: 22  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDVDMD-------------- 81
           PSRS RRKK KR+WLRE+ + E  +++L +T L   PS    + +D              
Sbjct: 257 PSRSARRKKAKRQWLREKTKLE--KEELLQTQLVVAPSQKPVITIDHQATKEKHCETLEN 316

Query: 82  -----------DDTVPVVVKPGHIRFEPVGKVVTDQAGQEKQNHFLKETLHWNGITNKKK 141
                      D+ VPV V+PGHIRF+P+    TD+A  + +   L E + WNG   KKK
Sbjct: 317 QQAEEVSDGFGDEVVPVEVRPGHIRFKPLAG--TDEASLDSEP--LVENVLWNGNMTKKK 376

Query: 142 GQKWGKEKSPSWKR---NNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTG 171
           GQKWG EKS   KR   + + D +++P +  +    P         I +++L  YTG
Sbjct: 377 GQKWGTEKSGFSKRYAQDFNEDATTQPAEAETLANCP---------IDYEQLVAYTG 418

The following BLAST results are available for this feature:

BLAST of CsaV3_2G034300 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652266.1	8.7e-127	100.00	hypothetical protein Csa_022487 [Cucumis sativus]	[more]
XP_031736546.1	2.7e-88	100.00	coilin-like isoform X1 [Cucumis sativus] >XP_031736547.1 coilin-like isoform X1 ...	[more]
XP_031741125.1	4.1e-76	96.08	coilin isoform X1 [Cucumis sativus] >KGN52354.2 hypothetical protein Csa_007787 ...	[more]
XP_031741126.1	1.1e-73	94.77	coilin isoform X2 [Cucumis sativus]	[more]
XP_008446142.1	4.2e-73	92.76	PREDICTED: coilin isoform X1 [Cucumis melo]	[more]

BLAST of CsaV3_2G034300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWK8	1.8e-13	35.03	Coilin OS=Arabidopsis thaliana OX=3702 GN=COIL PE=1 SV=1	[more]

BLAST of CsaV3_2G034300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7ST29	2.0e-73	92.76	Coilin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G002610 PE=3 SV...	[more]
A0A5D3CZQ0	2.0e-73	92.76	Coilin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001560 PE=3 SV...	[more]
A0A1S3BF15	2.0e-73	92.76	Coilin OS=Cucumis melo OX=3656 GN=LOC103488955 PE=3 SV=1	[more]
A0A1S3BF70	5.6e-71	91.45	Coilin OS=Cucumis melo OX=3656 GN=LOC103488955 PE=3 SV=1	[more]
A0A6J1H0F7	7.8e-65	84.31	Coilin OS=Cucurbita moschata OX=3662 GN=LOC111458457 PE=3 SV=1	[more]

BLAST of CsaV3_2G034300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G13030.1	1.2e-14	35.03	sphere organelles protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..138
None	No IPR available	PANTHER	PTHR15197:SF0	COILIN	coord: 20..174
IPR024822	Coilin	PANTHER	PTHR15197	COILIN P80	coord: 20..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G034300.1	CsaV3_2G034300.1	mRNA