CsaV3_2G033900 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G033900
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	zf-RVT domain-containing protein
Location	chr2: 22466936 .. 22467808 (-)
RNA-Seq Expression	CsaV3_2G033900
Synteny	CsaV3_2G033900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAGACCAAGGGTGCCTCCCAAAGTCAAGTTGTCAATGTGGAAGACTGCTACTAACTCCCTCCCTACTCTCAGTAATATCACCAAAAGGGGAATCATTACCAATCCTTTGTGTTTATTTTGCAGGAAGTCTGTGGAGGATGCGAGTCACATGTTTTGGGGATGCAAAATTTTTAGGCGTGTTTTGCTCTCTCTTTTTCCTTCCTTATATTCCTTTTTGTCGGGTTTCAAGAGCTATCGAAGCTTAATGGATCGTTGGAAAGGAACTACCGAGGCACTAAAAGGGTTGAATCAGTAAGTCAATGCTATATACTTCAATGGGAAGTGTGGAATTACAGAAACCAACTAAAGCACAAAGGGTCCCGATCAGACTGTGTTATGTCGACTAATAGGGTACTCGTGCGCGGTTGGAGGAGTTAGTGGGTGTTTACTCACTTGAGGCTCCAGTTTTGTGGGAAAAGTTCCAGGTGATATGGAGTTGTGGGTGTCGTTGCCTTCTAGGTTCTGGAAGCTCAATTCGAATGCGTCTTGATTGGATCATGAAGGGGTTGGGGGCATTAGTTGAGTGGTTCTTGACTCCTCCTTGCTGGATGCGGGAGAGTTTGCCTTGGCTTGTTCAAACCCTTGAAGCTTTGGTGATGCTAGCTCAACCCTTGAAGCTTTGGTGATGCTAGCTCTTTATTTGACTATTTTGCTTGTGGTTGGGTCAGACTCTAATGAACTCATTTATGCTATTCTGCCCAAGAGTCTTGACTGGTATATGGCTCGTCCAACCGATGTTTGTGGTGATTGGTCCGGCTTTTTGTTGCCAACTTTTATTGCTCTGAAGTTGTGGTTGGACTTCAATGTGATATCTAGTGAATCAATTTAA

mRNA sequence

ATGTGGAGACCAAGGGTGCCTCCCAAAGTCAAGTTGTCAATGTGGAAGACTGCTACTAACTCCCTCCCTACTCTCAGTAATATCACCAAAAGGGGAATCATTACCAATCCTTTGTGTTTATTTTGCAGGAAGTCTGTGGAGGATGCGAAGCTATCGAAGCTTAATGGATCGTTGGAAAGGAACTACCGAGGCACTAAAAGGGTTGAATCAGGTACTCGTGCGCGGTTGGAGGAGTTAGTGGGTGTTTACTCACTTGAGGCTCCAGTTTTGTGGGAAAAGTTCCAGGTGATATGGAGTTGTGGGTGTCGTTGCCTTCTAGGTTCTGGAAGCTCAATTCGAATGCGTCTTGATTGGATCATGAAGGGGTTGGGGGCATTAGTTGAGTGGTTCTTGACTCCTCCTTGCTGGATGCGGGAGAGTTTGCCTTGGCTTGTTCAAACCCTTGAAGCTTTGAGTCTTGACTGGTATATGGCTCGTCCAACCGATGTTTGTGGTGATTGGTCCGGCTTTTTGTTGCCAACTTTTATTGCTCTGAAGTTGTGGTTGGACTTCAATGTGATATCTAGTGAATCAATTTAA

Coding sequence (CDS)

ATGTGGAGACCAAGGGTGCCTCCCAAAGTCAAGTTGTCAATGTGGAAGACTGCTACTAACTCCCTCCCTACTCTCAGTAATATCACCAAAAGGGGAATCATTACCAATCCTTTGTGTTTATTTTGCAGGAAGTCTGTGGAGGATGCGAAGCTATCGAAGCTTAATGGATCGTTGGAAAGGAACTACCGAGGCACTAAAAGGGTTGAATCAGGTACTCGTGCGCGGTTGGAGGAGTTAGTGGGTGTTTACTCACTTGAGGCTCCAGTTTTGTGGGAAAAGTTCCAGGTGATATGGAGTTGTGGGTGTCGTTGCCTTCTAGGTTCTGGAAGCTCAATTCGAATGCGTCTTGATTGGATCATGAAGGGGTTGGGGGCATTAGTTGAGTGGTTCTTGACTCCTCCTTGCTGGATGCGGGAGAGTTTGCCTTGGCTTGTTCAAACCCTTGAAGCTTTGAGTCTTGACTGGTATATGGCTCGTCCAACCGATGTTTGTGGTGATTGGTCCGGCTTTTTGTTGCCAACTTTTATTGCTCTGAAGTTGTGGTTGGACTTCAATGTGATATCTAGTGAATCAATTTAA

Protein sequence

MWRPRVPPKVKLSMWKTATNSLPTLSNITKRGIITNPLCLFCRKSVEDAKLSKLNGSLERNYRGTKRVESGTRARLEELVGVYSLEAPVLWEKFQVIWSCGCRCLLGSGSSIRMRLDWIMKGLGALVEWFLTPPCWMRESLPWLVQTLEALSLDWYMARPTDVCGDWSGFLLPTFIALKLWLDFNVISSESI*

Homology

[Close]

BLAST of CsaV3_2G033900 vs. NCBI nr
Match: KGN63144.1 (hypothetical protein Csa_022313 [Cucumis sativus])

HSP 1 Score: 405.6 bits (1041), Expect = 2.4e-109
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MWRPRVPPKVKLSMWKTATNSLPTLSNITKRGIITNPLCLFCRKSVEDAKLSKLNGSLER 60
           MWRPRVPPKVKLSMWKTATNSLPTLSNITKRGIITNPLCLFCRKSVEDAKLSKLNGSLER
Sbjct: 1   MWRPRVPPKVKLSMWKTATNSLPTLSNITKRGIITNPLCLFCRKSVEDAKLSKLNGSLER 60

Query: 61  NYRGTKRVESGTRARLEELVGVYSLEAPVLWEKFQVIWSCGCRCLLGSGSSIRMRLDWIM 120
           NYRGTKRVESGTRARLEELVGVYSLEAPVLWEKFQVIWSCGCRCLLGSGSSIRMRLDWIM
Sbjct: 61  NYRGTKRVESGTRARLEELVGVYSLEAPVLWEKFQVIWSCGCRCLLGSGSSIRMRLDWIM 120

Query: 121 KGLGALVEWFLTPPCWMRESLPWLVQTLEALSLDWYMARPTDVCGDWSGFLLPTFIALKL 180
           KGLGALVEWFLTPPCWMRESLPWLVQTLEALSLDWYMARPTDVCGDWSGFLLPTFIALKL
Sbjct: 121 KGLGALVEWFLTPPCWMRESLPWLVQTLEALSLDWYMARPTDVCGDWSGFLLPTFIALKL 180

Query: 181 WLDFNVISSESI 193
           WLDFNVISSESI
Sbjct: 181 WLDFNVISSESI 192

[Close]

BLAST of CsaV3_2G033900 vs. NCBI nr
Match: CAB4267113.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 56.2 bits (134), Expect = 3.6e-04
Identity = 25/50 (50.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 1   MWRPRVPPKVKLSMWKTATNSLPTLSNITKRGIITNPLCLFCRKSVEDAK 51
           +W  +V PK+KL  W+  TNSLPTL N+  R I  NP+C FC  S E A+
Sbjct: 132 IWNMKVIPKIKLFFWRALTNSLPTLRNLFHRRIRANPVCSFCNSSDESAE 181

[Close]

BLAST of CsaV3_2G033900 vs. ExPASy TrEMBL
Match: A0A0A0LQ43 (zf-RVT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G404950 PE=4 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 1.2e-109
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MWRPRVPPKVKLSMWKTATNSLPTLSNITKRGIITNPLCLFCRKSVEDAKLSKLNGSLER 60
           MWRPRVPPKVKLSMWKTATNSLPTLSNITKRGIITNPLCLFCRKSVEDAKLSKLNGSLER
Sbjct: 1   MWRPRVPPKVKLSMWKTATNSLPTLSNITKRGIITNPLCLFCRKSVEDAKLSKLNGSLER 60

Query: 61  NYRGTKRVESGTRARLEELVGVYSLEAPVLWEKFQVIWSCGCRCLLGSGSSIRMRLDWIM 120
           NYRGTKRVESGTRARLEELVGVYSLEAPVLWEKFQVIWSCGCRCLLGSGSSIRMRLDWIM
Sbjct: 61  NYRGTKRVESGTRARLEELVGVYSLEAPVLWEKFQVIWSCGCRCLLGSGSSIRMRLDWIM 120

Query: 121 KGLGALVEWFLTPPCWMRESLPWLVQTLEALSLDWYMARPTDVCGDWSGFLLPTFIALKL 180
           KGLGALVEWFLTPPCWMRESLPWLVQTLEALSLDWYMARPTDVCGDWSGFLLPTFIALKL
Sbjct: 121 KGLGALVEWFLTPPCWMRESLPWLVQTLEALSLDWYMARPTDVCGDWSGFLLPTFIALKL 180

Query: 181 WLDFNVISSESI 193
           WLDFNVISSESI
Sbjct: 181 WLDFNVISSESI 192

[Close]

BLAST of CsaV3_2G033900 vs. ExPASy TrEMBL
Match: A0A6J5TTA1 (RNase H domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS9686 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-04
Identity = 25/50 (50.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 1   MWRPRVPPKVKLSMWKTATNSLPTLSNITKRGIITNPLCLFCRKSVEDAK 51
           +W  +V PK+KL  W+  TNSLPTL N+  R I  NP+C FC  S E A+
Sbjct: 132 IWNMKVIPKIKLFFWRALTNSLPTLRNLFHRRIRANPVCSFCNSSDESAE 181

[Close]

BLAST of CsaV3_2G033900 vs. ExPASy TrEMBL
Match: A0A5A7V9E5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003320 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.0e-04
Identity = 29/63 (46.03%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 4   PRVPPKVKLSMWKTATNSLPTLSNITKRGIITNPLCLFCR-----KSVEDAKLSKLNGSL 62
           P   PKVKL+MWK A ++L TL NI K+GI+ NP+CLFCR        +D    KL+G++
Sbjct: 143 PGGAPKVKLTMWK-AISALATLDNICKKGIVANPICLFCRVCWSLGDYKDRNSLKLSGAV 202

[Close]

BLAST of CsaV3_2G033900 vs. ExPASy TrEMBL
Match: A0A2N9HS90 (RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42403 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.6e-04
Identity = 22/49 (44.90%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 1    MWRPRVPPKVKLSMWKTATNSLPTLSNITKRGIITNPLCLFCRKSVEDA 50
            +WR RVP K+K  +W+ + +SLPT S + +R + +NPLC  CR+  ED+
Sbjct: 1295 IWRARVPAKIKTFLWRASHDSLPTKSGLFRRQVTSNPLCDTCREQSEDS 1343

[Close]

BLAST of CsaV3_2G033900 vs. ExPASy TrEMBL
Match: A0A2N9EVW3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10818 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.6e-04
Identity = 22/49 (44.90%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 1    MWRPRVPPKVKLSMWKTATNSLPTLSNITKRGIITNPLCLFCRKSVEDA 50
            +WR RVP K+K  +W+ + +SLPT S + +R + +NPLC  CR+  ED+
Sbjct: 1265 IWRARVPAKIKTFLWRASHDSLPTKSGLFRRQVTSNPLCDTCREQSEDS 1313

The following BLAST results are available for this feature:

BLAST of CsaV3_2G033900 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63144.1	2.4e-109	100.00	hypothetical protein Csa_022313 [Cucumis sativus]	[more]
CAB4267113.1	3.6e-04	50.00	unnamed protein product [Prunus armeniaca]	[more]

BLAST of CsaV3_2G033900 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G033900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ43	1.2e-109	100.00	zf-RVT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G404950 PE=4...	[more]
A0A6J5TTA1	1.7e-04	50.00	RNase H domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS96...	[more]
A0A5A7V9E5	5.0e-04	46.03	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A2N9HS90	6.6e-04	44.90	RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42403 ...	[more]
A0A2N9EVW3	6.6e-04	44.90	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10818 PE=3 SV=1	[more]

BLAST of CsaV3_2G033900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 1..50 e-value: 5.6E-10 score: 39.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G033900.1	CsaV3_2G033900.1	mRNA