CsaV3_2G033370 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G033370
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionTranscription initiation factor IIA subunit 2
Locationchr2: 22149995 .. 22154206 (-)
RNA-Seq ExpressionCsaV3_2G033370
SyntenyCsaV3_2G033370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAATATTTAGATTTATAACAAAATATTTTGAATTTTAATTTGATAAAGGATTACGAAAAAATATATAAAAAATACATACATATACTATTACAACTTTCATTATTTTGTGAATTTTGTTTTAAGAAAGGAAGAAAGCAAAAAGAAAAGAAAAAAGGAAAAGAAAAAAGAGAAAAAAAGGAATGTAGAAAGCCCTAACAAAATTAATTCTCCCTCTCTTTTGCGTGGAACAGCCCCCACTTTGAACTTTCAGCCGGCCAAGAAATCCTCTCTCCGATGACGATTCGCAGCGACTACTAATGACCGAACCACTCTCCGGCATCCCATTTCTGCCTTCATCAACCACGCGAGATTCGTAGTTCCAGCGACGGCGGCGCTTACATCCTCCAGTGGCGGTGACCATCGACACCCTGGAAATCCACGCGGTCTGAACACCCTGGAAGCGACGCTTTCCTCCCTTTCGTCAAGGTTAGATACTTACCCATTGTTTCAAGGCTGGATTTAAGTTACCCACTTCTTAAGGGATCGTTATATACAGGTATTCGACCACCAACAAACACGGATTTGGGTTGTTTTGAGTAAAAATTAGCGGGTAAACACTCTAAATTTATTTTCTAACTAGTTCAAGGTTCGTTAGATTAGTTTCTAATTCTTGGAAGTCATTTTGTACGTTTGAAATAGTTTAGTAACTATTTTATCACCTTGCAGCAAGGACTCAAGTCTGTTGTCTTGTTGAGTTTTAGTAGTTAGAACTCCGTTTAGAGCCTTTTCAATTGAATTTGTGTAGATGTTTGAATATATGTATGATTAATGTTAGAGAACATAACACATAAGCATAAAACATATCATAGAGTTTAGAATGGAAAGTATTAGAATTATTGAGAATGTCGATGGCCCTTTGTGGAGTTAGTCAGTTAGGCCCACGTTGACTGAGAGATCGGTGGCCTTGGATAATATCAGTTGGAGCCGGAAAAGAGGTCGTTGGCCTTGGATATATCAGTTAGGGTCAATGGAGATCGTTGGTAGCGTTGGATGAAGTCAACAAAGTTGATGGAGAGTGTTGATGATAATGGATAAATCATGTCGGTGCGCCTGGGCACGATTAGCTGGGGTCAACGTGTTTGAGGTATTCATTCAGAATTTTTTGTGAGAGTTAAGCTGGAATGTTTACTGAAGTTGTATTAATTTTCTATTGGATCCCATTCAGAATTTTTTGTGCGAGTTAAGCTGGAATGTTTATTGAAGTTGTATTCATTTTCTATTGGATTCTGTCGTCACTTATCCAATAGGGAAACGACGACAATGGTTTCCTTTCTTTGCTCGATGAGTGTGACTTTTAGGAGGGATGTGTTTGGAAGCCCAATCCTTTGAAGGCTTCTCTTGTAAATCTTTCTTCAAATTGTTGTTAGGCCCCTCCCATGGTTGCATATTGGTTTTTGGCGCGGTTTGGAGGATAAAGATTCCACAGAAAATCTAGTTTTTTATCTAGCAGGTTTTGATAGGTTGCAAGAACACCTTGGATGGGCTTGCTAAGAAGATGCCTACGCTTATGGGACCGTCCTGTTGTATTCTTTTTTGGAAGGAAGAGGAAACCTTAACCACCTGCTTTGGGACTGTTAATATGTGAGGCTTGTGTGGTCTTGTTTCTTTCAGAAGTTTGGTTTCCAGATTGCTGGACAGAGAAAGATCTGTACCATGATCAAAAGGAGTATATCTTGTATCGTCCGCCTTTCAAAGAGAAAGGTCGGTTTTTGTTGCTTTCCAGAGTGTACGCCATAGTTTGGGGTTTTGGGGGTGAAAGGAACGAGAGAGTTTTTAGACTTTAGAGGTTTAGAGAAGGACCCTTCTATGTTTGGTCCTCGGTGAGGTTCCATATTTCTCTGTGGGATTCCATTGGTAACATTTTATTAAGTTGGAAGTCTTTCTTGTAGAAGGCTTGTTTTTTGATGGCCTGGTTTTGTTTGCTCTTGTATTCTTTTCATTCATTTTCAATGAAAGTTGACCATTTTTTTAAGAAAAAAAAAAGCAAAACTAGAGTTTCTATCTTAGCTAAAGAGCTTCAATATTTTGCAGATCTTGATTTCTGAAGAAGAATGGCAACCTTTGAACTCTACCGCAGATCAACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTTCAGAACGGTACTCTTAGTCCCGAGCTTGCTATTCAGGTTCTTGTCCAGTTCGATAAGGTATAGCCGAAGCTGTTAGGAGATGCGGTATACTTTTTATTTGTGTTTAGAATTTAGGTCTTGTTTGATTTAATTTGTTACTGCATTTGCAGTCGATGACTGAGGCTCTGGAATCACAAGTGAAAAGCAAGGTGACTGTCAAGGTATTTTTTTTTGGCTTGACAATCTTTAATGCTATAAATTTATGTTGCTAAATAAAGTCAACGTTATAAATTTGAAACATATTTTTACTGATAAGAGGAATCGGTTGTGTTTGCCTTGCTCGTAGATTTCTCTGTTTGTGCTCTAGTGCATGTCTAGAACTCGAGCCAAATTATTTTGTCAATAACACATTACACATTTATATGTCGAATGGTGAGAATGAGATGATCAATGTGGTACTTAAGTGACTTGGCTCTTCCACCCCAATAGCTGACTTTTGGTGTGTGGTTTCTCAAGGTGCTTAAGTACCAAACAATTGTATCACAGCTGGTTGTCAACGTTTTGGAGTAGAGTCGCCTGAGGGTGCTGACCATGTATGGCTGAGTGAAGTATTACTGGATTAGCCACTTGGATGTCGGCTTTTTGGGGACAAGGTATTGTTAGGAGCCAATGTAGTGTGGGGCGCCGTTGCCCCACATTGGTTAGAATAGTTGACCAATGTGATACTTAAGTGGCTTGACTCTTCCACCCAAAAGCCAGCTTTTGGGATGTAGTTCTCCAAGGTGCTTAAGTACCTAAAGTATAGTGGATATTCTCCCGGTCTTTTGGTTGCCATGTAGTGAATAGAACCATGATATAGGAATGAAACAGTGTACGGTATTAAACCATTTGTATTGAGAGATGGTAGTGTTTCTTTGGTGGAACTTTTGATTTCTAGGTGATTCGGTTGGTATTGTTCATTCTATTCCTTGCTTCGATGTTTCTTGATTTTAGAAATGTTTTTCCCTATGAAATATTGCTCCTTGGAAAAGTTTATCTGGAATAAACTTTGTAGTTCTGTGTTTTTGGAATCTGGGGACAAAGTCATCCCTGTTGTTAGAGAGGTGGCCATATCAGATTCTACAATGAGTCTTCGTGAGTCCACAGCTATTGCTTTCAAGTTCTATGTTCAATTCTATGGATGTTGGATTTTCTAACGATACTCAGTTGAAAGTTCATCACACACACACACACAGATTGTACGAGGACCATTGCTCTGAAAGAAATTATGAAATCATAATCACACAACAATGTTTTAGCAGTATAGTTAACGTATGCATGACATTTTGTTTGTCTTGAACACTTTCTTTCTGGTGATTTCTAAATTTCTTTGTCCTCGTACTGTCTTGTCATGCAACAGGGACATCTACACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCGTCGTTTAAAAATGAGGATTCCAGTGAGAATGTTGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTGTCACAGTAAGCTCTCATACATCAGGTTTATTCAATGAAATTTGCATAGTTATTTGCTGACGATGGAGCGAAGAACATTCACGGTGAGGAGGAAATGACCATCCAGGAAGAGATTCAAACGTGATTCTCTAAAGTCATCAACCCAAACAGCAAAAAGTTGCATTGACCATACATAGACTGTAACTGGCTTCTAAAGTTGATTGCATAACAATTACACGACCCGGCTTCTAGTTTAACGATAAAATAAAACATGATATGTGTTTCAATACTATGCTATTAATTTCCTTTGAATCTACTTTCTGTACATTAGAAGAATTCAAATTACCACTTCGAAAGGAATAAACTTCATTGGAACTGTTTTCTTATTATTCATTATTTCAGTATCATTGATGTTAGGTTTGGGAGCAAACATTATTGAATAATAAGAAAGAATCAAACATTTTCCACATCTTTTTTTATAGCAAACCTCTTCAAAATTCATTTCCTAGGGGAATCATCATGATTCATGTCAACTCCCTTTTACTATCTATGACAACACCC

mRNA sequence

ATGGCAACCTTTGAACTCTACCGCAGATCAACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTTCAGAACGGTACTCTTAGTCCCGAGCTTGCTATTCAGGTTCTTGTCCAGTTCGATAAGTCGATGACTGAGGCTCTGGAATCACAAGTGAAAAGCAAGGTGACTGTCAAGGGACATCTACACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCGTCGTTTAAAAATGAGGATTCCAGTGAGAATGTTGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTGTCACAGTAA

Coding sequence (CDS)

ATGGCAACCTTTGAACTCTACCGCAGATCAACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTTCAGAACGGTACTCTTAGTCCCGAGCTTGCTATTCAGGTTCTTGTCCAGTTCGATAAGTCGATGACTGAGGCTCTGGAATCACAAGTGAAAAGCAAGGTGACTGTCAAGGGACATCTACACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCGTCGTTTAAAAATGAGGATTCCAGTGAGAATGTTGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTGTCACAGTAA

Protein sequence

MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ*
Homology
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BLAST of CsaV3_2G033370 vs. NCBI nr
Match: XP_004138655.1 (transcription initiation factor IIA subunit 2 [Cucumis sativus] >XP_011649891.1 transcription initiation factor IIA subunit 2 [Cucumis sativus] >KGN63090.1 hypothetical protein Csa_022522 [Cucumis sativus])

HSP 1 Score: 212.2 bits (539), Expect = 2.2e-51
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 106

[Close]
BLAST of CsaV3_2G033370 vs. NCBI nr
Match: XP_038897043.1 (transcription initiation factor IIA subunit 2 [Benincasa hispida])

HSP 1 Score: 208.8 bits (530), Expect = 2.4e-50
Identity = 103/106 (97.17%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVT+K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA+FKNEDSSE+VGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSSESVGRIKIVACDSKLLSQ 106

[Close]
BLAST of CsaV3_2G033370 vs. NCBI nr
Match: XP_008441202.1 (PREDICTED: transcription initiation factor IIA subunit 2 [Cucumis melo] >XP_008441203.1 PREDICTED: transcription initiation factor IIA subunit 2 [Cucumis melo])

HSP 1 Score: 208.4 bits (529), Expect = 3.1e-50
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKVT+K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDASFKNEDSSE VGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 106

[Close]
BLAST of CsaV3_2G033370 vs. NCBI nr
Match: XP_022133819.1 (transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133827.1 transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133836.1 transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133845.1 transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133853.1 transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133862.1 transcription initiation factor IIA subunit 2 [Momordica charantia])

HSP 1 Score: 207.6 bits (527), Expect = 5.3e-50
Identity = 102/106 (96.23%), Postives = 105/106 (99.06%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA+FKNEDS ENVGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ 106

[Close]
BLAST of CsaV3_2G033370 vs. NCBI nr
Match: KAG7031763.1 (Transcription initiation factor IIA subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 206.1 bits (523), Expect = 1.5e-49
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA+FKNEDS E VGRIKIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]
BLAST of CsaV3_2G033370 vs. ExPASy Swiss-Prot
Match: Q39236 (Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana OX=3702 GN=TFIIA-S PE=3 SV=2)

HSP 1 Score: 194.9 bits (494), Expect = 4.7e-49
Identity = 94/106 (88.68%), Postives = 102/106 (96.23%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA FK++D  ENV R+KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

[Close]
BLAST of CsaV3_2G033370 vs. ExPASy Swiss-Prot
Match: A2XZI2 (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica OX=39946 GN=TFIIAy PE=3 SV=2)

HSP 1 Score: 193.7 bits (491), Expect = 1.0e-48
Identity = 93/106 (87.74%), Postives = 103/106 (97.17%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFIL +ASFKNE+++E VG++KIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106

[Close]
BLAST of CsaV3_2G033370 vs. ExPASy Swiss-Prot
Match: Q0DLD3 (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TFIIAy PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.0e-48
Identity = 93/106 (87.74%), Postives = 103/106 (97.17%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFIL +ASFKNE+++E VG++KIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106

[Close]
BLAST of CsaV3_2G033370 vs. ExPASy Swiss-Prot
Match: O74948 (Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=toa2 PE=3 SV=2)

HSP 1 Score: 120.9 bits (302), Expect = 8.6e-27
Identity = 53/99 (53.54%), Postives = 79/99 (79.80%), Query Frame = 0 

Query: 4   FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHL 63
           +ELYRRS+IG+ LT+ LD+++  G +SP+LA++VL  FDKSMTEAL  +V+S++T KGHL
Sbjct: 5   YELYRRSSIGISLTDALDDLISQGKISPQLAMKVLFNFDKSMTEALAEKVRSRLTFKGHL 64

Query: 64  HTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSK 103
            TYRFCD VWTFI+++ SF+ ++ +    +I+IVAC ++
Sbjct: 65  DTYRFCDEVWTFIIKNPSFRFDNETVTSNKIRIVACATR 103

[Close]
BLAST of CsaV3_2G033370 vs. ExPASy Swiss-Prot
Match: Q54ND1 (Transcription initiation factor IIA subunit 2 OS=Dictyostelium discoideum OX=44689 GN=gtf2a2 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.7e-25
Identity = 56/101 (55.45%), Postives = 76/101 (75.25%), Query Frame = 0 

Query: 4   FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHL 63
           +ELYR+STIG  LT+TL+E++ N  +S  L  ++L QFDK++ EAL + VK+K T KG L
Sbjct: 8   YELYRKSTIGEALTDTLEELLINQYISNSLYQKILTQFDKTINEALSNTVKAKTTFKGSL 67

Query: 64  HTYRFCDNVWTFILQDASFKNE-DSSENVGRIKIVACDSKL 104
           HTYRFCD+VWTFIL++A FK E +    V R+KIVACD+ +
Sbjct: 68  HTYRFCDSVWTFILENAQFKTEANEIVKVDRVKIVACDANV 108

[Close]
BLAST of CsaV3_2G033370 vs. ExPASy TrEMBL
Match: A0A0A0LMF8 (Transcription initiation factor IIA subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_2G401990 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.0e-51
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 106

[Close]
BLAST of CsaV3_2G033370 vs. ExPASy TrEMBL
Match: A0A1S3B2F6 (Transcription initiation factor IIA subunit 2 OS=Cucumis melo OX=3656 GN=LOC103485407 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.5e-50
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKVT+K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDASFKNEDSSE VGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 106

[Close]
BLAST of CsaV3_2G033370 vs. ExPASy TrEMBL
Match: A0A6J1BWA2 (Transcription initiation factor IIA subunit 2 OS=Momordica charantia OX=3673 GN=LOC111006284 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.6e-50
Identity = 102/106 (96.23%), Postives = 105/106 (99.06%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA+FKNEDS ENVGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ 106

[Close]
BLAST of CsaV3_2G033370 vs. ExPASy TrEMBL
Match: A0A6J1J100 (Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111480333 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 9.8e-50
Identity = 101/106 (95.28%), Postives = 104/106 (98.11%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVT+K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA+FKNEDS E VGRIKIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]
BLAST of CsaV3_2G033370 vs. ExPASy TrEMBL
Match: A0A6J1FTM1 (Transcription initiation factor IIA subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111446721 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 9.8e-50
Identity = 101/106 (95.28%), Postives = 104/106 (98.11%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVT+K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA+FKNEDS E VGRIKIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]
BLAST of CsaV3_2G033370 vs. TAIR 10
Match: AT4G24440.1 (transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) )

HSP 1 Score: 194.9 bits (494), Expect = 3.3e-50
Identity = 94/106 (88.68%), Postives = 102/106 (96.23%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA FK++D  ENV R+KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

[Close]
BLAST of CsaV3_2G033370 vs. TAIR 10
Match: AT4G24440.2 (transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) )

HSP 1 Score: 194.9 bits (494), Expect = 3.3e-50
Identity = 94/106 (88.68%), Postives = 102/106 (96.23%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA FK++D  ENV R+KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

The following BLAST results are available for this feature:
BLAST of CsaV3_2G033370 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004138655.12.2e-51100.00transcription initiation factor IIA subunit 2 [Cucumis sativus] >XP_011649891.1 ... [more]
XP_038897043.12.4e-5097.17transcription initiation factor IIA subunit 2 [Benincasa hispida][more]
XP_008441202.13.1e-5097.17PREDICTED: transcription initiation factor IIA subunit 2 [Cucumis melo] >XP_0084... [more]
XP_022133819.15.3e-5096.23transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_02213382... [more]
KAG7031763.11.5e-4996.23Transcription initiation factor IIA subunit 2 [Cucurbita argyrosperma subsp. arg... [more]
BLAST of CsaV3_2G033370 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q392364.7e-4988.68Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana OX=3702 GN... [more]
A2XZI21.0e-4887.74Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica OX=3... [more]
Q0DLD31.0e-4887.74Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica OX... [more]
O749488.6e-2753.54Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (stra... [more]
Q54ND14.7e-2555.45Transcription initiation factor IIA subunit 2 OS=Dictyostelium discoideum OX=446... [more]
BLAST of CsaV3_2G033370 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMF81.0e-51100.00Transcription initiation factor IIA subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_... [more]
A0A1S3B2F61.5e-5097.17Transcription initiation factor IIA subunit 2 OS=Cucumis melo OX=3656 GN=LOC1034... [more]
A0A6J1BWA22.6e-5096.23Transcription initiation factor IIA subunit 2 OS=Momordica charantia OX=3673 GN=... [more]
A0A6J1J1009.8e-5095.28Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1FTM19.8e-5095.28Transcription initiation factor IIA subunit 2 OS=Cucurbita moschata OX=3662 GN=L... [more]
BLAST of CsaV3_2G033370 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G24440.13.3e-5088.68transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) [more]
AT4G24440.23.3e-5088.68transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003194Transcription initiation factor IIA, gamma subunitPIRSFPIRSF009415TFIIA_gamma_humcoord: 1..106
e-value: 1.8E-49
score: 164.4
IPR003194Transcription initiation factor IIA, gamma subunitPANTHERPTHR10966TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2coord: 1..106
IPR009088Transcription factor IIA, beta-barrelGENE3D2.30.18.10coord: 55..105
e-value: 1.2E-23
score: 84.6
IPR009088Transcription factor IIA, beta-barrelSUPERFAMILY50784Transcription factor IIA (TFIIA), beta-barrel domaincoord: 52..102
IPR009083Transcription factor IIA, alpha-helical domainGENE3D1.10.287.190coord: 3..54
e-value: 3.1E-24
score: 86.6
IPR015871Transcription initiation factor IIA, gamma subunit, C-terminalPFAMPF02751TFIIA_gamma_Ccoord: 60..101
e-value: 1.8E-21
score: 76.0
IPR015871Transcription initiation factor IIA, gamma subunit, C-terminalCDDcd10014TFIIA_gamma_Ccoord: 57..102
e-value: 8.35397E-23
score: 81.1399
IPR015872Transcription initiation factor IIA, gamma subunit, N-terminalPFAMPF02268TFIIA_gamma_Ncoord: 4..49
e-value: 1.1E-22
score: 79.8
IPR015872Transcription initiation factor IIA, gamma subunit, N-terminalCDDcd10145TFIIA_gamma_Ncoord: 4..49
e-value: 1.22968E-22
score: 81.0728
NoneNo IPR availablePANTHERPTHR10966:SF8TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2coord: 1..106
NoneNo IPR availableSUPERFAMILY47396Transcription factor IIA (TFIIA), alpha-helical domaincoord: 4..54

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G033370.1CsaV3_2G033370.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
cellular_component GO:0005672 transcription factor TFIIA complex