CsaV3_2G033190 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G033190
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2: 22043252 .. 22044453 (+)
RNA-Seq Expression	CsaV3_2G033190
Synteny	CsaV3_2G033190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCGGCAATCAAAAGACCTTGAAACCACCTGACAAGGAAGCTAGTGAATTAAGCAGAGAGGAAGAAGAAACAGAATTTGGAGCAAAGAGTTCCGAACTGAGCAAAAAACTCAATCGGTAACGAGTAGAAATGGGAGTTGACAGAGAAAAACGAGGAAAGCTCGGATGATTTTACTACAGCAAAGGCAGACTAGAGGAATGAAGAAGAATCGGAAAAACCACCGAATTCGGAAAGTTCGAGTCTTGGGCGGCGCGGCGGCCGAAAGGGACGAACAAATTGGCGGGGATTGTTTGCAAATGCTTTGGCCGGACAGTCCACTAGAGGATACCTCCTCTAGTCCTCTCTTTATTCTCTTAATATGGAAGTTCTTCTAAAAGGGGGAAATTAGAACAATCTTACTTTAGACTTTGAGTTTCTTTTAAATGAAATTTTTGTTTGTTTGTTTCAATTTAAAATTTTGACGTCAACCACTTCAAATAAAAATAAGTCATTTTAAAATTAACTCTTTAAACTCAAGCATAATTACAAATTTACTAATTATATTAAAAAACAACTAGATTCAAAATAATTAAATACATGCTAACATTTTAAAAGATGACAAACATTTTAAAAGATTTGCAAGTATAGCAAAATTTATCAAATTTCATAAATGATATAAGTTTATCATCCATAAACTATGTTGTAAATATTGGTCTATCAGTAATAGACTATACAAATCTAATTATCAGTCATAGATAATACAAGTCTAATCAAAGATAATTTTACTATATTTACAATTTATTTTAATTGTTCTTATATTTTTAATTATTATTTTTCAAAATCGTCTATTACTTACCATTACCTTTGAATTGAGGGTAGTTATAAATTTAACAATTAAATTCAAATTAATGAAGTATATAGCACAATTTTAAAAAATTTGTAAATATAGCCAAAATTTTCAAATTCTATCAATGATATAAGTCTATCACTGATGGACCATATTGCAAATATTGGTCTATCACTGATATAACATATGAAGTCTATCAGCGATACAAGTCTTATCGGTGATAGTTTTGCTATATTTGCAATTTTTTTAAAATATTGCTATATCATTCATTATTATTGCTAAAATAGTCATCAATTGCAATTTCCCTTGAATTTATAGCAAGAGCCCAGGAGCGGAGAAAAACGTCCAAGTTCGGGATTCGGAATGGGCTTAG

mRNA sequence

ATGCCCGGCAATCAAAAGACCTTGAAACCACCTGACAAGGAAGCTAGTGAATTAAGCAGAGAGGAAGAAGAAACAGAATTTGGAGCAAAGAGTTCCGAACTGAGCAAAAAACTCAATCGGCAGACTAGAGGAATGAAGAAGAATCGGAAAAACCACCGAATTCGGAAAGTTCGAGTCTTGGGCGGCGCGGCGGCCGAAAGGGACGAACAAATTGGCGGGGATTGTTTGCAAATGCTTTGGCCGGACAGTCCACTAGAGGATACCTCCTCTAGTCCTCTCTTTATTCTCTTAATATGGAACAAGAGCCCAGGAGCGGAGAAAAACGTCCAAGTTCGGGATTCGGAATGGGCTTAG

Coding sequence (CDS)

ATGCCCGGCAATCAAAAGACCTTGAAACCACCTGACAAGGAAGCTAGTGAATTAAGCAGAGAGGAAGAAGAAACAGAATTTGGAGCAAAGAGTTCCGAACTGAGCAAAAAACTCAATCGGCAGACTAGAGGAATGAAGAAGAATCGGAAAAACCACCGAATTCGGAAAGTTCGAGTCTTGGGCGGCGCGGCGGCCGAAAGGGACGAACAAATTGGCGGGGATTGTTTGCAAATGCTTTGGCCGGACAGTCCACTAGAGGATACCTCCTCTAGTCCTCTCTTTATTCTCTTAATATGGAACAAGAGCCCAGGAGCGGAGAAAAACGTCCAAGTTCGGGATTCGGAATGGGCTTAG

Protein sequence

MPGNQKTLKPPDKEASELSREEEETEFGAKSSELSKKLNRQTRGMKKNRKNHRIRKVRVLGGAAAERDEQIGGDCLQMLWPDSPLEDTSSSPLFILLIWNKSPGAEKNVQVRDSEWA*

Homology

[Close]

BLAST of CsaV3_2G033190 vs. NCBI nr
Match: KGN63072.1 (hypothetical protein Csa_022309 [Cucumis sativus])

HSP 1 Score: 230.7 bits (587), Expect = 6.5e-57
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MPGNQKTLKPPDKEASELSREEEETEFGAKSSELSKKLNRQTRGMKKNRKNHRIRKVRVL 60
           MPGNQKTLKPPDKEASELSREEEETEFGAKSSELSKKLNRQTRGMKKNRKNHRIRKVRVL
Sbjct: 1   MPGNQKTLKPPDKEASELSREEEETEFGAKSSELSKKLNRQTRGMKKNRKNHRIRKVRVL 60

Query: 61  GGAAAERDEQIGGDCLQMLWPDSPLEDTSSSPLFILLIWNKSPGAEKNVQVRDSEWA 118
           GGAAAERDEQIGGDCLQMLWPDSPLEDTSSSPLFILLIWNKSPGAEKNVQVRDSEWA
Sbjct: 61  GGAAAERDEQIGGDCLQMLWPDSPLEDTSSSPLFILLIWNKSPGAEKNVQVRDSEWA 117

[Close]

BLAST of CsaV3_2G033190 vs. ExPASy TrEMBL
Match: A0A0A0LQL4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G401320 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.1e-57
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MPGNQKTLKPPDKEASELSREEEETEFGAKSSELSKKLNRQTRGMKKNRKNHRIRKVRVL 60
           MPGNQKTLKPPDKEASELSREEEETEFGAKSSELSKKLNRQTRGMKKNRKNHRIRKVRVL
Sbjct: 1   MPGNQKTLKPPDKEASELSREEEETEFGAKSSELSKKLNRQTRGMKKNRKNHRIRKVRVL 60

Query: 61  GGAAAERDEQIGGDCLQMLWPDSPLEDTSSSPLFILLIWNKSPGAEKNVQVRDSEWA 118
           GGAAAERDEQIGGDCLQMLWPDSPLEDTSSSPLFILLIWNKSPGAEKNVQVRDSEWA
Sbjct: 61  GGAAAERDEQIGGDCLQMLWPDSPLEDTSSSPLFILLIWNKSPGAEKNVQVRDSEWA 117

The following BLAST results are available for this feature:

BLAST of CsaV3_2G033190 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63072.1	6.5e-57	100.00	hypothetical protein Csa_022309 [Cucumis sativus]	[more]

BLAST of CsaV3_2G033190 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G033190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQL4	3.1e-57	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G401320 PE=4 SV=1	[more]

BLAST of CsaV3_2G033190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G033190.1	CsaV3_2G033190.1	mRNA