CsaV3_2G030940 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G030940
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Descriptionserine/threonine-protein phosphatase 7 long form homolog
Locationchr2: 20354259 .. 20354822 (+)
RNA-Seq ExpressionCsaV3_2G030940
SyntenyCsaV3_2G030940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATACAACAAATCCTTGAACCTTGTGACACAGGTGCCCGATTGCATTCACTTGATTTACATGGTCGACACGACAGTGATTGGGTTAACTATTTGGCTCCTCAAATTTTACTTTGGGAAGATCGAAATAACTTTATTGCAAGTGTGCCTCAAATCAAGGATGACATATATAGATGTTGCGCCTGTATACATGCAATGGTACACCAATATTAGTCGGCGATACATCACAAAGGCAAGAGCATCATACCATTTTTTGGTAAGGGTTTATTATTTAATTGAATCAATTAAAAATTGTTTAGTTGCATAGTCTAATTGTAATTGTATGGACTGTAGGAAAGGTTTGCACAGTTGGAAATATCTAGTATATCATCAAATGCAGTGGCTAGAACGGTAAAACTTGCTTTGCGTAATTTGACATCCATATATAGACTAAGATATTTTGAATGCGACGTTTCTGATGAAAAACAAGGTGATCCAGCTAGACATGAGGATTTTCCCTCTCAACTTGATTTTCAAAATCAGTATGCAACATTCCGATTGATCATTTCACCAATACTCCCATGA

mRNA sequence

ATGATACAACAAATCCTTGAACCTTGTGACACAGGTGCCCGATTGCATTCACTTGATTTACATGGTCGACACGACAGTGATTGGGTTAACTATTTGGCTCCTCAAATTTTACTTTGGGAAGATCGAAATAACTTTATTGCAAGTGTGCCTCAAATCAAGGATGACATATATAGATGTTGCGCCTGTATACATGCAATGGAAAGGTTTGCACAGTTGGAAATATCTAGTATATCATCAAATGCAGTGGCTAGAACGGTAAAACTTGCTTTGCGTAATTTGACATCCATATATAGACTAAGATATTTTGAATGCGACGTTTCTGATGAAAAACAAGGTGATCCAGCTAGACATGAGGATTTTCCCTCTCAACTTGATTTTCAAAATCAGTATGCAACATTCCGATTGATCATTTCACCAATACTCCCATGA

Coding sequence (CDS)

ATGATACAACAAATCCTTGAACCTTGTGACACAGGTGCCCGATTGCATTCACTTGATTTACATGGTCGACACGACAGTGATTGGGTTAACTATTTGGCTCCTCAAATTTTACTTTGGGAAGATCGAAATAACTTTATTGCAAGTGTGCCTCAAATCAAGGATGACATATATAGATGTTGCGCCTGTATACATGCAATGGAAAGGTTTGCACAGTTGGAAATATCTAGTATATCATCAAATGCAGTGGCTAGAACGGTAAAACTTGCTTTGCGTAATTTGACATCCATATATAGACTAAGATATTTTGAATGCGACGTTTCTGATGAAAAACAAGGTGATCCAGCTAGACATGAGGATTTTCCCTCTCAACTTGATTTTCAAAATCAGTATGCAACATTCCGATTGATCATTTCACCAATACTCCCATGA

Protein sequence

MIQQILEPCDTGARLHSLDLHGRHDSDWVNYLAPQILLWEDRNNFIASVPQIKDDIYRCCACIHAMERFAQLEISSISSNAVARTVKLALRNLTSIYRLRYFECDVSDEKQGDPARHEDFPSQLDFQNQYATFRLIISPILP*
Homology
[Close]
BLAST of CsaV3_2G030940 vs. NCBI nr
Match: KAE8652165.1 (hypothetical protein Csa_021938 [Cucumis sativus])

HSP 1 Score: 297.4 bits (760), Expect = 6.8e-77
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MIQQILEPCDTGARLHSLDLHGRHDSDWVNYLAPQILLWEDRNNFIASVPQIKDDIYRCC 60
           MIQQILEPCDTGARLHSLDLHGRHDSDWVNYLAPQILLWEDRNNFIASVPQIKDDIYRCC
Sbjct: 1   MIQQILEPCDTGARLHSLDLHGRHDSDWVNYLAPQILLWEDRNNFIASVPQIKDDIYRCC 60

Query: 61  ACIHAMERFAQLEISSISSNAVARTVKLALRNLTSIYRLRYFECDVSDEKQGDPARHEDF 120
           ACIHAMERFAQLEISSISSNAVARTVKLALRNLTSIYRLRYFECDVSDEKQGDPARHEDF
Sbjct: 61  ACIHAMERFAQLEISSISSNAVARTVKLALRNLTSIYRLRYFECDVSDEKQGDPARHEDF 120

Query: 121 PSQLDFQNQYATFRLIISPILP 143
           PSQLDFQNQYATFRLIISPILP
Sbjct: 121 PSQLDFQNQYATFRLIISPILP 142

[Close]
BLAST of CsaV3_2G030940 vs. NCBI nr
Match: KAA0037364.1 (hypothetical protein E6C27_scaffold278G00620 [Cucumis melo var. makuwa] >TYJ97542.1 hypothetical protein E5676_scaffold85G00600 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-15
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 0 

Query: 64  HAMERFAQLEISSISSNAVARTVKLALRNLTSIYRLRYFECDVSDEKQGDPARHEDFPSQ 123
           ++ E+FAQL IS+ SSNAVART KLAL NL SIY +RYFE +V  ++QGD ARHED P Q
Sbjct: 92  YSFEKFAQLGISTASSNAVARTTKLALLNLISIYIVRYFEGNVPYKEQGDLARHEDVPFQ 151

Query: 124 LDFQNQYATFR---LIISPILP 143
           LDFQNQYAT +      +PI+P
Sbjct: 152 LDFQNQYATSQADHFTNTPIMP 173

[Close]
BLAST of CsaV3_2G030940 vs. NCBI nr
Match: XP_038891623.1 (serine/threonine-protein phosphatase 7 long form homolog [Benincasa hispida])

HSP 1 Score: 92.4 bits (228), Expect = 3.3e-15
Identity = 50/126 (39.68%), Postives = 75/126 (59.52%), Query Frame = 0 

Query: 1   MIQQILEPCDTGARLHSLDLHGRHDSDWVNYLAPQILLWEDRNNFIASVPQIKDDI---- 60
           M+QQI +PC+  ARL S DL G+H+ DW+ YLAPQI +WE+R+  + + P I + +    
Sbjct: 169 MLQQIPQPCNMEARLLSHDLRGKHERDWIAYLAPQITIWENRHCLVVNGPPINNGVGTEP 228

Query: 61  -----YRCCACIHAMERFAQLEISSISSNAVARTVKLALRNLTSIYRLRYFECDVSDEKQ 118
                Y   + ++  +  A   + +   N    T ++ LR LTSIYR+RYF+ DV  E+Q
Sbjct: 229 GYIEWYSTVSRLYITKAEASYHLLAELPNLSISTQRV-LRRLTSIYRVRYFDGDVPMEEQ 288

[Close]
BLAST of CsaV3_2G030940 vs. NCBI nr
Match: XP_022159786.1 (serine/threonine-protein phosphatase 7 long form homolog [Momordica charantia] >XP_022159787.1 serine/threonine-protein phosphatase 7 long form homolog [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 6.3e-06
Identity = 42/129 (32.56%), Postives = 61/129 (47.29%), Query Frame = 0 

Query: 2   IQQILEPCDTGARLHSLDLHGRHDSDWVNYLAPQILLWEDRNNFIASVPQIKDD-----I 61
           +Q I   C+T  +LH+ DL GRH+  WV++LAPQI  WE+R+N I     I  D      
Sbjct: 55  MQHIPAQCNTDMQLHTYDLRGRHERSWVSHLAPQITEWENRHNVIIQGQHINRDEDVEPR 114

Query: 62  YRCCACIHAMERFAQLEISSISSNAVARTVKL---ALRNLTSIYRLRYFECDVSDEKQGD 121
           Y C           +   S    N +     L   +L+NLT+ YR+R+ +     EK   
Sbjct: 115 YYCWYYSITRRYITRAGASYNYLNNLPNMTDLGRRSLQNLTNAYRVRHLDGPERREK--- 174

Query: 122 PARHEDFPS 123
             RH+  P+
Sbjct: 175 --RHQRGPN 178

[Close]
BLAST of CsaV3_2G030940 vs. NCBI nr
Match: XP_008460604.1 (PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo] >XP_008460605.1 PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo] >XP_008460606.1 PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo] >XP_008460608.1 PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo] >XP_016902570.1 PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo] >KAA0054119.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 2.0e-04
Identity = 23/46 (50.00%), Postives = 29/46 (63.04%), Query Frame = 0 

Query: 3   QQILEPCDTGARLHSLDLHGRHDSDWVNYLAPQILLWEDRNNFIAS 49
           Q+I +PCDTG +LH +D  G+H  DW  Y    I LWE R N IA+
Sbjct: 519 QEIPQPCDTGTKLHMIDRRGKHHYDWKAYHGQYIKLWEARENSIAT 564

[Close]
BLAST of CsaV3_2G030940 vs. ExPASy TrEMBL
Match: A0A5D3BCJ3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold85G00600 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.5e-16
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 0 

Query: 64  HAMERFAQLEISSISSNAVARTVKLALRNLTSIYRLRYFECDVSDEKQGDPARHEDFPSQ 123
           ++ E+FAQL IS+ SSNAVART KLAL NL SIY +RYFE +V  ++QGD ARHED P Q
Sbjct: 92  YSFEKFAQLGISTASSNAVARTTKLALLNLISIYIVRYFEGNVPYKEQGDLARHEDVPFQ 151

Query: 124 LDFQNQYATFR---LIISPILP 143
           LDFQNQYAT +      +PI+P
Sbjct: 152 LDFQNQYATSQADHFTNTPIMP 173

[Close]
BLAST of CsaV3_2G030940 vs. ExPASy TrEMBL
Match: A0A6J1E501 (serine/threonine-protein phosphatase 7 long form homolog OS=Momordica charantia OX=3673 GN=LOC111026102 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.0e-06
Identity = 42/129 (32.56%), Postives = 61/129 (47.29%), Query Frame = 0 

Query: 2   IQQILEPCDTGARLHSLDLHGRHDSDWVNYLAPQILLWEDRNNFIASVPQIKDD-----I 61
           +Q I   C+T  +LH+ DL GRH+  WV++LAPQI  WE+R+N I     I  D      
Sbjct: 55  MQHIPAQCNTDMQLHTYDLRGRHERSWVSHLAPQITEWENRHNVIIQGQHINRDEDVEPR 114

Query: 62  YRCCACIHAMERFAQLEISSISSNAVARTVKL---ALRNLTSIYRLRYFECDVSDEKQGD 121
           Y C           +   S    N +     L   +L+NLT+ YR+R+ +     EK   
Sbjct: 115 YYCWYYSITRRYITRAGASYNYLNNLPNMTDLGRRSLQNLTNAYRVRHLDGPERREK--- 174

Query: 122 PARHEDFPS 123
             RH+  P+
Sbjct: 175 --RHQRGPN 178

[Close]
BLAST of CsaV3_2G030940 vs. ExPASy TrEMBL
Match: A0A1S3CE15 (serine/threonine-protein phosphatase 7 long form homolog OS=Cucumis melo OX=3656 GN=LOC103499383 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 9.8e-05
Identity = 23/46 (50.00%), Postives = 29/46 (63.04%), Query Frame = 0 

Query: 3   QQILEPCDTGARLHSLDLHGRHDSDWVNYLAPQILLWEDRNNFIAS 49
           Q+I +PCDTG +LH +D  G+H  DW  Y    I LWE R N IA+
Sbjct: 519 QEIPQPCDTGTKLHMIDRRGKHHYDWKAYHGQYIKLWEARENSIAT 564

[Close]
BLAST of CsaV3_2G030940 vs. ExPASy TrEMBL
Match: A0A5A7UKT4 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00310 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 9.8e-05
Identity = 23/46 (50.00%), Postives = 29/46 (63.04%), Query Frame = 0 

Query: 3   QQILEPCDTGARLHSLDLHGRHDSDWVNYLAPQILLWEDRNNFIAS 49
           Q+I +PCDTG +LH +D  G+H  DW  Y    I LWE R N IA+
Sbjct: 519 QEIPQPCDTGTKLHMIDRRGKHHYDWKAYHGQYIKLWEARENSIAT 564

The following BLAST results are available for this feature:
BLAST of CsaV3_2G030940 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8652165.16.8e-77100.00hypothetical protein Csa_021938 [Cucumis sativus][more]
KAA0037364.11.1e-1562.20hypothetical protein E6C27_scaffold278G00620 [Cucumis melo var. makuwa] >TYJ9754... [more]
XP_038891623.13.3e-1539.68serine/threonine-protein phosphatase 7 long form homolog [Benincasa hispida][more]
XP_022159786.16.3e-0632.56serine/threonine-protein phosphatase 7 long form homolog [Momordica charantia] >... [more]
XP_008460604.12.0e-0450.00PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis mel... [more]
BLAST of CsaV3_2G030940 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G030940 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BCJ35.5e-1662.20Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1E5013.0e-0632.56serine/threonine-protein phosphatase 7 long form homolog OS=Momordica charantia ... [more]
A0A1S3CE159.8e-0550.00serine/threonine-protein phosphatase 7 long form homolog OS=Cucumis melo OX=3656... [more]
A0A5A7UKT49.8e-0550.00Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
BLAST of CsaV3_2G030940 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G030940.1CsaV3_2G030940.1mRNA