CsaV3_2G030230 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G030230
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionRibosomal RNA small subunit methyltransferase A
Locationchr2: 19830188 .. 19831408 (-)
RNA-Seq ExpressionCsaV3_2G030230
SyntenyCsaV3_2G030230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGTGGCATTTCCCCAACTCTCGTGGTGGTTATGGAGTGGGAAGCATAAAGAACCTCGAAGCTCGAATGGTGGGTCTGCTTTAAATGCTTCACTAGATACAGCCAACCGGGAAACGGACACTCTAAAATTTCCTTTAGTTAATGGGGCCAACTTATCATCCTCATCTAGAAGGGTGAAGAGGAAATGGCATAGTCGAGAAGAAAGAAAAATTGATAGGGAATACGACATTGTTCTTGTTCCATCTGATGGAGGATGTGTTTCAGGGTCTGAGTCTGATGATTCAGATTGGTCGATCGGATGGTCGGAGCCCCACGGACCTGGATTCCAGAGTGATGATGAATCAGATAACAGTTTTGCTGTGCTGGTTCCATGTTATGGACGCATTTACAATGATTTTGTGGACGAGACTAAGAATAGTATCTTAAGTGCCGTTGGGAACATTAACGACAGTTTTTCTGCTGGTAAGAGTTGTTTCTTCTCAAGCTTGCATATAGTTGGTGTTGCTTGTTAGTTATTGCTTTTGCCTACCAAAAGATTCTTCTAGTCCTCTTTCGTACATAGTGACTCGATAAACTTCGTTCATTTCCTATGTCAGGTTAATTTCATTGTTCACAATCTAACTTACACTGTAAATGTTGGAAATCAAATAAACGTATTTCCAAGAAGGAAAAACTTGCATGTAATTATGTCTCATATTCATAGACCCTTATTTATAGGAAGATGACGCTATTTTCTTTTATGAATCATGCTCAGCAGGAGGCGTTGTGAAACTTCATCTCTAAGAAATATTACTTGACACATTCTCAATAGGATAATGATGTATGAGAAAAAGATATCATGTACTAAAACTGAGCAAGCAAATAGGCTTACATGCTGATAGTGTAGAATGATAGGATCAAATTGAACTTGTTTCAATGTATAAACCTCCTAGCTCCCTTACAGATACTCTAAATAACCATAGTAGGACTTTAATAGAATTATATTCTGTTTGCTTTGGGCCTTTTCGGAAATATTTGGAGTTTCCCTGTTCTGATTGGCTTCATATTGTGTGAATGTTAAAGCCAATGCGAATAATACTAAAAATAAGTTACTACAATTGTAATTTTCTTTTGGTTTGCTTTACGTTTGTTTTAAGCTGATTATGTCTGCACTTCTCCATGGAACAGAGAGCAAGAAATATATGGAACAGTGGCTGTCCTCTCTTCAGAACTGCTAA

mRNA sequence

ATGTCTGTGGCATTTCCCCAACTCTCGTGGTGGTTATGGAGTGGGAAGCATAAAGAACCTCGAAGCTCGAATGGTGGGTCTGCTTTAAATGCTTCACTAGATACAGCCAACCGGGAAACGGACACTCTAAAATTTCCTTTAGTTAATGGGGCCAACTTATCATCCTCATCTAGAAGGGTGAAGAGGAAATGGCATAGTCGAGAAGAAAGAAAAATTGATAGGGAATACGACATTGTTCTTGTTCCATCTGATGGAGGATGTGTTTCAGGGTCTGAGTCTGATGATTCAGATTGGTCGATCGGATGGTCGGAGCCCCACGGACCTGGATTCCAGAGTGATGATGAATCAGATAACAGTTTTGCTGTGCTGGTTCCATGTTATGGACGCATTTACAATGATTTTGTGGACGAGACTAAGAATAGTATCTTAAGTGCCGTTGGGAACATTAACGACAGTTTTTCTGCTGAGAGCAAGAAATATATGGAACAGTGGCTGTCCTCTCTTCAGAACTGCTAA

Coding sequence (CDS)

ATGTCTGTGGCATTTCCCCAACTCTCGTGGTGGTTATGGAGTGGGAAGCATAAAGAACCTCGAAGCTCGAATGGTGGGTCTGCTTTAAATGCTTCACTAGATACAGCCAACCGGGAAACGGACACTCTAAAATTTCCTTTAGTTAATGGGGCCAACTTATCATCCTCATCTAGAAGGGTGAAGAGGAAATGGCATAGTCGAGAAGAAAGAAAAATTGATAGGGAATACGACATTGTTCTTGTTCCATCTGATGGAGGATGTGTTTCAGGGTCTGAGTCTGATGATTCAGATTGGTCGATCGGATGGTCGGAGCCCCACGGACCTGGATTCCAGAGTGATGATGAATCAGATAACAGTTTTGCTGTGCTGGTTCCATGTTATGGACGCATTTACAATGATTTTGTGGACGAGACTAAGAATAGTATCTTAAGTGCCGTTGGGAACATTAACGACAGTTTTTCTGCTGAGAGCAAGAAATATATGGAACAGTGGCTGTCCTCTCTTCAGAACTGCTAA

Protein sequence

MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC*
Homology
[Close]
BLAST of CsaV3_2G030230 vs. NCBI nr
Match: XP_004152600.1 (uncharacterized protein LOC101213956 [Cucumis sativus] >XP_031736756.1 uncharacterized protein LOC101213956 [Cucumis sativus] >XP_031736757.1 uncharacterized protein LOC101213956 [Cucumis sativus] >XP_031736758.1 uncharacterized protein LOC101213956 [Cucumis sativus] >KGN62990.2 hypothetical protein Csa_022594 [Cucumis sativus])

HSP 1 Score: 354.4 bits (908), Expect = 5.6e-94
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRV 60
           MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRV
Sbjct: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120

Query: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC 172
           AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC
Sbjct: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC 171

[Close]
BLAST of CsaV3_2G030230 vs. NCBI nr
Match: XP_038886443.1 (uncharacterized protein LOC120076637 [Benincasa hispida] >XP_038886444.1 uncharacterized protein LOC120076637 [Benincasa hispida] >XP_038886445.1 uncharacterized protein LOC120076637 [Benincasa hispida] >XP_038886446.1 uncharacterized protein LOC120076637 [Benincasa hispida])

HSP 1 Score: 353.6 bits (906), Expect = 9.6e-94
Identity = 170/171 (99.42%), Postives = 171/171 (100.00%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRV 60
           MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGAN+SSSSRRV
Sbjct: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120

Query: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC 172
           AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC
Sbjct: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC 171

[Close]
BLAST of CsaV3_2G030230 vs. NCBI nr
Match: XP_008444920.1 (PREDICTED: uncharacterized protein LOC103488121 [Cucumis melo] >XP_008444921.1 PREDICTED: uncharacterized protein LOC103488121 [Cucumis melo] >XP_016900065.1 PREDICTED: uncharacterized protein LOC103488121 [Cucumis melo])

HSP 1 Score: 352.8 bits (904), Expect = 1.6e-93
Identity = 168/171 (98.25%), Postives = 171/171 (100.00%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRV 60
           MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGAN+SSSSRRV
Sbjct: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120
           KRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF
Sbjct: 61  KRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120

Query: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC 172
           AVLVPCYGRIYNDFVDETKNSILSA+GNINDSFSAESKKYMEQWLSSLQNC
Sbjct: 121 AVLVPCYGRIYNDFVDETKNSILSAIGNINDSFSAESKKYMEQWLSSLQNC 171

[Close]
BLAST of CsaV3_2G030230 vs. NCBI nr
Match: XP_022997281.1 (uncharacterized protein LOC111492231 isoform X2 [Cucurbita maxima])

HSP 1 Score: 331.6 bits (849), Expect = 3.9e-87
Identity = 160/171 (93.57%), Postives = 166/171 (97.08%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRV 60
           MSVAFPQLSWWL SGKHKEP+SSNGGSALNASLDTANRETDTLKF LVNGAN+SSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSIGWSEPHGPGFQSDD+SDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC 172
           AVLVPCY RIYNDFVDETK S+LSAVGNI+DSFS ESKKYMEQWLSSLQNC
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSSLQNC 171

[Close]
BLAST of CsaV3_2G030230 vs. NCBI nr
Match: XP_023545352.1 (uncharacterized protein LOC111804795 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 331.3 bits (848), Expect = 5.1e-87
Identity = 159/171 (92.98%), Postives = 166/171 (97.08%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRV 60
           MSVAFPQLSWWL SGKHKEP+SSNGGS+LNASLDTANRETDTLKF LVNGAN+SSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSSLNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSIGWSEPHGPGFQSDD+SDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCISGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC 172
           AVLVPCY RIYNDFVDETK S+LSAVGNI+DSFS ESKKYMEQWLSSLQNC
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSSLQNC 171

[Close]
BLAST of CsaV3_2G030230 vs. ExPASy TrEMBL
Match: A0A1S3BB05 (uncharacterized protein LOC103488121 OS=Cucumis melo OX=3656 GN=LOC103488121 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 7.9e-94
Identity = 168/171 (98.25%), Postives = 171/171 (100.00%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRV 60
           MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGAN+SSSSRRV
Sbjct: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120
           KRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF
Sbjct: 61  KRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120

Query: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC 172
           AVLVPCYGRIYNDFVDETKNSILSA+GNINDSFSAESKKYMEQWLSSLQNC
Sbjct: 121 AVLVPCYGRIYNDFVDETKNSILSAIGNINDSFSAESKKYMEQWLSSLQNC 171

[Close]
BLAST of CsaV3_2G030230 vs. ExPASy TrEMBL
Match: A0A6J1K730 (uncharacterized protein LOC111492231 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492231 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 1.9e-87
Identity = 160/171 (93.57%), Postives = 166/171 (97.08%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRV 60
           MSVAFPQLSWWL SGKHKEP+SSNGGSALNASLDTANRETDTLKF LVNGAN+SSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSIGWSEPHGPGFQSDD+SDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC 172
           AVLVPCY RIYNDFVDETK S+LSAVGNI+DSFS ESKKYMEQWLSSLQNC
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSSLQNC 171

[Close]
BLAST of CsaV3_2G030230 vs. ExPASy TrEMBL
Match: A0A6J1HCV7 (uncharacterized protein LOC111462457 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462457 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 4.2e-87
Identity = 159/171 (92.98%), Postives = 166/171 (97.08%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRV 60
           MSVAFPQLSWWL SGKHKEP+SSNGGSALNASLDTANRETDTLKF LVNGAN+SSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSIGWSEPHGPGFQSDD+SDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC 172
           AVLVPCY RIYNDFVDETK S+LSAVGNI+DSFS ESKKYMEQWLS+LQNC
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC 171

[Close]
BLAST of CsaV3_2G030230 vs. ExPASy TrEMBL
Match: A0A6J1KDE3 (uncharacterized protein LOC111492231 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492231 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.6e-86
Identity = 161/172 (93.60%), Postives = 167/172 (97.09%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRV 60
           MSVAFPQLSWWL SGKHKEP+SSNGGSALNASLDTANRETDTLKF LVNGAN+SSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSIGWSEPHGPGFQSDD+SDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFS-AESKKYMEQWLSSLQNC 172
           AVLVPCY RIYNDFVDETK S+LSAVGNI+DSFS AESKKYMEQWLSSLQNC
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTAESKKYMEQWLSSLQNC 172

[Close]
BLAST of CsaV3_2G030230 vs. ExPASy TrEMBL
Match: A0A6J1HCV2 (uncharacterized protein LOC111462457 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462457 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 3.6e-86
Identity = 160/172 (93.02%), Postives = 167/172 (97.09%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRV 60
           MSVAFPQLSWWL SGKHKEP+SSNGGSALNASLDTANRETDTLKF LVNGAN+SSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSIGWSEPHGPGFQSDD+SDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFS-AESKKYMEQWLSSLQNC 172
           AVLVPCY RIYNDFVDETK S+LSAVGNI+DSFS AESKKYMEQWLS+LQNC
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTAESKKYMEQWLSALQNC 172

[Close]
BLAST of CsaV3_2G030230 vs. TAIR 10
Match: AT4G38060.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 87.8 bits (216), Expect = 9.2e-18
Identity = 55/133 (41.35%), Postives = 70/133 (52.63%), Query Frame = 0 

Query: 38  RETDTLKFPLVNGANLSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSD 97
           +ET+ LKFP       +  +R  KRK    E         + +V  DG           +
Sbjct: 20  KETEALKFP-------TKIARVNKRKELELESFGSSGSESVDVVAGDG----------PE 79

Query: 98  WSIGWSEPHGPGFQSDDE-SDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAE 157
           WS+GW+EPHGP FQSDDE +D  F VLVPCY R   +      N +LSAV N+ +    +
Sbjct: 80  WSVGWTEPHGPDFQSDDEGNDGGFLVLVPCY-RAVVEGSSNNNNQLLSAVKNLPNGLPPD 134

Query: 158 SKKYMEQWLSSLQ 170
            K YMEQWLSSLQ
Sbjct: 140 GKNYMEQWLSSLQ 134

[Close]
BLAST of CsaV3_2G030230 vs. TAIR 10
Match: AT5G65480.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38060.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 86.7 bits (213), Expect = 2.0e-17
Identity = 63/173 (36.42%), Postives = 88/173 (50.87%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLWSG---KHKEPRSS--NGGSALNASLDTANRETDTLKFPLVNGANLSS 60
           M+V+FP+L  WL  G   K +E + S   G S+L+ SL    ++T T K       + SS
Sbjct: 1   MAVSFPRLPRWLCGGSNTKDREKKESIPKGSSSLSPSL----KKTTTSK-----TGSSSS 60

Query: 61  SSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDE 120
           S ++ KR W  R       E D +      G V   E DD +WSIGW EPHGPGF+++D+
Sbjct: 61  SVKKTKRGWIGRGGSGSGGEEDKI------GNVVFPEPDDPEWSIGWVEPHGPGFKAEDD 120

Query: 121 SDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSL 169
               F VLVP Y ++ +   ++  N   S         +A   K MEQWLSS+
Sbjct: 121 DCGGFVVLVPLYKKVMDGSGNQIPNGFFSP--------AAPDGKNMEQWLSSM 150

[Close]
BLAST of CsaV3_2G030230 vs. TAIR 10
Match: AT4G38060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65480.1); Has 63 Blast hits to 63 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 3.7e-11
Identity = 44/113 (38.94%), Postives = 57/113 (50.44%), Query Frame = 0 

Query: 38  RETDTLKFPLVNGANLSSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSD 97
           +ET+ LKFP       +  +R  KRK    E         + +V  DG           +
Sbjct: 20  KETEALKFP-------TKIARVNKRKELELESFGSSGSESVDVVAGDG----------PE 79

Query: 98  WSIGWSEPHGPGFQSDDE-SDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNI 150
           WS+GW+EPHGP FQSDDE +D  F VLVPCY R   +      N +LSAV N+
Sbjct: 80  WSVGWTEPHGPDFQSDDEGNDGGFLVLVPCY-RAVVEGSSNNNNQLLSAVKNL 114

The following BLAST results are available for this feature:
BLAST of CsaV3_2G030230 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004152600.15.6e-94100.00uncharacterized protein LOC101213956 [Cucumis sativus] >XP_031736756.1 uncharact... [more]
XP_038886443.19.6e-9499.42uncharacterized protein LOC120076637 [Benincasa hispida] >XP_038886444.1 unchara... [more]
XP_008444920.11.6e-9398.25PREDICTED: uncharacterized protein LOC103488121 [Cucumis melo] >XP_008444921.1 P... [more]
XP_022997281.13.9e-8793.57uncharacterized protein LOC111492231 isoform X2 [Cucurbita maxima][more]
XP_023545352.15.1e-8792.98uncharacterized protein LOC111804795 isoform X2 [Cucurbita pepo subsp. pepo][more]
BLAST of CsaV3_2G030230 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G030230 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BB057.9e-9498.25uncharacterized protein LOC103488121 OS=Cucumis melo OX=3656 GN=LOC103488121 PE=... [more]
A0A6J1K7301.9e-8793.57uncharacterized protein LOC111492231 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1HCV74.2e-8792.98uncharacterized protein LOC111462457 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1KDE31.6e-8693.60uncharacterized protein LOC111492231 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1HCV23.6e-8693.02uncharacterized protein LOC111462457 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
BLAST of CsaV3_2G030230 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G38060.29.2e-1841.35unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G65480.12.0e-1736.42unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G38060.13.7e-1138.94unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34464:SF5SUBFAMILY NOT NAMEDcoord: 1..170
NoneNo IPR availablePANTHERPTHR34464OS09G0376300 PROTEINcoord: 1..170

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G030230.1CsaV3_2G030230.1mRNA