CsaV3_2G029490 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G029490
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Gibberellin-regulated family protein
Location	chr2: 19316627 .. 19317559 (-)
RNA-Seq Expression	CsaV3_2G029490
Synteny	CsaV3_2G029490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGATTGAACTCAAATTCCATTTCCCTTTGCACATAACATGTCATATCCTGCACCAGTTCTCACCCACTCCTGTGTTCACTTAACCACACAGCTTCAGATTTTTTTGCTATAAAACCAACCCTTTCTATCACTGATCTCTCCAAAATATTATCCCATTCCAATTCAAAAATCCCCTAAAAAACCATGTTCATCCTCACCAAACCTCTCTTTGCTTCCCTCCTTCTCTCTCTCCTCTTCCTCCACTTTGTAAATTTTATCTAACACCACTTTCTTTTTCTCTTTTCTAAAAATTTAATTACTTTACTAATTAATTTCTCCATTGAAGTTACTTGTAGGTGGAATCCAACGGCGTGGGTTTACTCCCTCCAAATCCTCGGAGAATGGGTGATTATAATTTTTAAAAATTTGTTCCTTCAGATTAAATTAATTTTTATCGTAATTTATGGGCTTAACTCAAGCTTTTACAGATTGCCGCGGGGCTTGTACGAGAAGGTGCACCTTGTCGTCGAGGCCGAGGCTGTGCAATAGAGCGTGTGGGACATGCTGTCAGCGATGCAACTGCGTTCCGCCAGGAACTTCCGGCAACCACCATCTCTGCCCTTGCTACGCCGCCATGACCACCCACGGCGGCCGCCTCAAGTGCCCTTGAATTAACCCGTTGACTGCCTCAAC

mRNA sequence

ATGGATTGCCGCGGGGCTTGTACGAGAAGGTGCACCTTGTCGTCGAGGCCGAGGCTGTGCAATAGAGCGTGTGGGACATGCTGTCAGCGATGCAACTGCGTTCCGCCAGGAACTTCCGGCAACCACCATCTCTGCCCTTGCTACGCCGCCATGACCACCCACGGCGGCCGCCTCAAGTGCCCTTGA

Coding sequence (CDS)

ATGGATTGCCGCGGGGCTTGTACGAGAAGGTGCACCTTGTCGTCGAGGCCGAGGCTGTGCAATAGAGCGTGTGGGACATGCTGTCAGCGATGCAACTGCGTTCCGCCAGGAACTTCCGGCAACCACCATCTCTGCCCTTGCTACGCCGCCATGACCACCCACGGCGGCCGCCTCAAGTGCCCTTGA

Protein sequence

MDCRGACTRRCTLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP*

Homology

[Close]

BLAST of CsaV3_2G029490 vs. NCBI nr
Match: KAE8652125.1 (hypothetical protein Csa_021849 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 1.6e-30
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MDCRGACTRRCTLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC 60
          MDCRGACTRRCTLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC
Sbjct: 1  MDCRGACTRRCTLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC 60

Query: 61 P 62
          P
Sbjct: 61 P 61

[Close]

BLAST of CsaV3_2G029490 vs. NCBI nr
Match: XP_031736573.1 (snakin-2 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 1.6e-30
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MDCRGACTRRCTLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC 60
          MDCRGACTRRCTLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC
Sbjct: 37 MDCRGACTRRCTLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC 96

Query: 61 P 62
          P
Sbjct: 97 P 97

[Close]

BLAST of CsaV3_2G029490 vs. NCBI nr
Match: XP_008444802.1 (PREDICTED: snakin-2-like [Cucumis melo])

HSP 1 Score: 140.6 bits (353), Expect = 4.6e-30
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MDCRGACTRRCTLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC 60
          MDCRGACTRRC+LSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC
Sbjct: 37 MDCRGACTRRCSLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC 96

Query: 61 P 62
          P
Sbjct: 97 P 97

[Close]

BLAST of CsaV3_2G029490 vs. NCBI nr
Match: XP_022144284.1 (snakin-2-like [Momordica charantia])

HSP 1 Score: 129.8 bits (325), Expect = 8.1e-27
Identity = 56/61 (91.80%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   MDCRGACTRRCTLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC 60
           MDC GAC  RC LSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGR KC
Sbjct: 49  MDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRPKC 108

Query: 61  P 62
           P
Sbjct: 109 P 109

[Close]

BLAST of CsaV3_2G029490 vs. NCBI nr
Match: XP_023002563.1 (snakin-2-like [Cucurbita maxima])

HSP 1 Score: 128.6 bits (322), Expect = 1.8e-26
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  MDCRGACTRRCTLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC 60
          MDC GAC  RC LSSRPRLC+RACGTCCQRCNCVPPGTSGNHHLCPCYA++TTHGGRLKC
Sbjct: 37 MDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHLCPCYASLTTHGGRLKC 96

Query: 61 P 62
          P
Sbjct: 97 P 97

[Close]

BLAST of CsaV3_2G029490 vs. ExPASy Swiss-Prot
Match: Q93X17 (Snakin-2 OS=Solanum tuberosum OX=4113 GN=SN2 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.3e-24
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 1   MDCRGACTRRCTLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC 60
           +DC GAC  RC LSSRPRLCNRACGTCC RCNCVPPGTSGN   CPCYA++TTHG + KC
Sbjct: 44  IDCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKC 103

Query: 61  P 62
           P
Sbjct: 104 P 104

[Close]

BLAST of CsaV3_2G029490 vs. ExPASy Swiss-Prot
Match: P46687 (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana OX=3702 GN=GASA3 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.5e-23
Identity = 45/61 (73.77%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 1  MDCRGACTRRCTLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC 60
          +DC G C  RC+ SSRP LC RAC +CC RCNCVPPGT+GNHHLCPCYA++TT GGRLKC
Sbjct: 39 IDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKC 98

Query: 61 P 62
          P
Sbjct: 99 P 99

[Close]

BLAST of CsaV3_2G029490 vs. ExPASy Swiss-Prot
Match: P46688 (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana OX=3702 GN=GASA2 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 7.4e-23
Identity = 45/61 (73.77%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 1  MDCRGACTRRCTLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC 60
          +DC G C  RC+ SSR +LC RAC +CC RCNCVPPGTSGN HLCPCYA++TTHGGRLKC
Sbjct: 39 IDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKC 98

Query: 61 P 62
          P
Sbjct: 99 P 99

[Close]

BLAST of CsaV3_2G029490 vs. ExPASy Swiss-Prot
Match: F4IQJ4 (Gibberellin-regulated protein 11 OS=Arabidopsis thaliana OX=3702 GN=GASA11 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.8e-22
Identity = 43/61 (70.49%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 1  MDCRGACTRRCTLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC 60
          +DC   C  RC+LSSRP LC+RACGTCC RCNCV PGTSGN+  CPCY ++TTHGGR KC
Sbjct: 34 IDCNSRCQERCSLSSRPNLCHRACGTCCARCNCVAPGTSGNYDKCPCYGSLTTHGGRRKC 93

Query: 61 P 62
          P
Sbjct: 94 P 94

[Close]

BLAST of CsaV3_2G029490 vs. ExPASy Swiss-Prot
Match: P46689 (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana OX=3702 GN=GASA1 PE=2 SV=2)

HSP 1 Score: 104.8 bits (260), Expect = 3.7e-22
Identity = 44/61 (72.13%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 1  MDCRGACTRRCTLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC 60
          +DC  AC  RC LS RPRLC+RACGTCC RCNCVPPGT GN+  C CYA++TTHGGR KC
Sbjct: 38 IDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKC 97

Query: 61 P 62
          P
Sbjct: 98 P 98

[Close]

BLAST of CsaV3_2G029490 vs. ExPASy TrEMBL
Match: A0A0A0LNS5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G368260 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 7.7e-31
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MDCRGACTRRCTLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC 60
          MDCRGACTRRCTLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC
Sbjct: 37 MDCRGACTRRCTLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC 96

Query: 61 P 62
          P
Sbjct: 97 P 97

[Close]

BLAST of CsaV3_2G029490 vs. ExPASy TrEMBL
Match: A0A1S3BBY7 (snakin-2-like OS=Cucumis melo OX=3656 GN=LOC103488041 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.2e-30
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MDCRGACTRRCTLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC 60
          MDCRGACTRRC+LSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC
Sbjct: 37 MDCRGACTRRCSLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC 96

Query: 61 P 62
          P
Sbjct: 97 P 97

[Close]

BLAST of CsaV3_2G029490 vs. ExPASy TrEMBL
Match: A0A6J1CRW3 (snakin-2-like OS=Momordica charantia OX=3673 GN=LOC111014004 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 3.9e-27
Identity = 56/61 (91.80%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   MDCRGACTRRCTLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC 60
           MDC GAC  RC LSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGR KC
Sbjct: 49  MDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRPKC 108

Query: 61  P 62
           P
Sbjct: 109 P 109

[Close]

BLAST of CsaV3_2G029490 vs. ExPASy TrEMBL
Match: A0A6J1KTY1 (snakin-2-like OS=Cucurbita maxima OX=3661 GN=LOC111496372 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 8.8e-27
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  MDCRGACTRRCTLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC 60
          MDC GAC  RC LSSRPRLC+RACGTCCQRCNCVPPGTSGNHHLCPCYA++TTHGGRLKC
Sbjct: 37 MDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHLCPCYASLTTHGGRLKC 96

Query: 61 P 62
          P
Sbjct: 97 P 97

[Close]

BLAST of CsaV3_2G029490 vs. ExPASy TrEMBL
Match: A0A6J1GJ50 (snakin-2-like OS=Cucurbita moschata OX=3662 GN=LOC111454338 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.5e-26
Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  MDCRGACTRRCTLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC 60
          MDC GAC  RC LSSRPRLC+RACGTCCQRCNCVPPGTSGNHH+CPCYA++TTHGGRLKC
Sbjct: 37 MDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKC 96

Query: 61 P 62
          P
Sbjct: 97 P 97

[Close]

BLAST of CsaV3_2G029490 vs. TAIR 10
Match: AT4G09600.1 (GAST1 protein homolog 3 )

HSP 1 Score: 108.6 bits (270), Expect = 1.8e-24
Identity = 45/61 (73.77%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 1  MDCRGACTRRCTLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC 60
          +DC G C  RC+ SSRP LC RAC +CC RCNCVPPGT+GNHHLCPCYA++TT GGRLKC
Sbjct: 39 IDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKC 98

Query: 61 P 62
          P
Sbjct: 99 P 99

[Close]

BLAST of CsaV3_2G029490 vs. TAIR 10
Match: AT4G09610.1 (GAST1 protein homolog 2 )

HSP 1 Score: 107.1 bits (266), Expect = 5.3e-24
Identity = 45/61 (73.77%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 1  MDCRGACTRRCTLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC 60
          +DC G C  RC+ SSR +LC RAC +CC RCNCVPPGTSGN HLCPCYA++TTHGGRLKC
Sbjct: 39 IDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKC 98

Query: 61 P 62
          P
Sbjct: 99 P 99

[Close]

BLAST of CsaV3_2G029490 vs. TAIR 10
Match: AT2G18420.1 (Gibberellin-regulated family protein )

HSP 1 Score: 105.1 bits (261), Expect = 2.0e-23
Identity = 43/61 (70.49%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 1  MDCRGACTRRCTLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC 60
          +DC   C  RC+LSSRP LC+RACGTCC RCNCV PGTSGN+  CPCY ++TTHGGR KC
Sbjct: 34 IDCNSRCQERCSLSSRPNLCHRACGTCCARCNCVAPGTSGNYDKCPCYGSLTTHGGRRKC 93

Query: 61 P 62
          P
Sbjct: 94 P 94

[Close]

BLAST of CsaV3_2G029490 vs. TAIR 10
Match: AT1G75750.1 (GAST1 protein homolog 1 )

HSP 1 Score: 104.8 bits (260), Expect = 2.6e-23
Identity = 44/61 (72.13%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 1  MDCRGACTRRCTLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC 60
          +DC  AC  RC LS RPRLC+RACGTCC RCNCVPPGT GN+  C CYA++TTHGGR KC
Sbjct: 38 IDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKC 97

Query: 61 P 62
          P
Sbjct: 98 P 98

[Close]

BLAST of CsaV3_2G029490 vs. TAIR 10
Match: AT1G75750.2 (GAST1 protein homolog 1 )

HSP 1 Score: 104.8 bits (260), Expect = 2.6e-23
Identity = 44/61 (72.13%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 1  MDCRGACTRRCTLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC 60
          +DC  AC  RC LS RPRLC+RACGTCC RCNCVPPGT GN+  C CYA++TTHGGR KC
Sbjct: 37 IDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKC 96

Query: 61 P 62
          P
Sbjct: 97 P 97

The following BLAST results are available for this feature:

BLAST of CsaV3_2G029490 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652125.1	1.6e-30	100.00	hypothetical protein Csa_021849 [Cucumis sativus]	[more]
XP_031736573.1	1.6e-30	100.00	snakin-2 [Cucumis sativus]	[more]
XP_008444802.1	4.6e-30	98.36	PREDICTED: snakin-2-like [Cucumis melo]	[more]
XP_022144284.1	8.1e-27	91.80	snakin-2-like [Momordica charantia]	[more]
XP_023002563.1	1.8e-26	88.52	snakin-2-like [Cucurbita maxima]	[more]

BLAST of CsaV3_2G029490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93X17	2.3e-24	77.05	Snakin-2 OS=Solanum tuberosum OX=4113 GN=SN2 PE=1 SV=1	[more]
P46687	2.5e-23	73.77	Gibberellin-regulated protein 3 OS=Arabidopsis thaliana OX=3702 GN=GASA3 PE=2 SV...	[more]
P46688	7.4e-23	73.77	Gibberellin-regulated protein 2 OS=Arabidopsis thaliana OX=3702 GN=GASA2 PE=2 SV...	[more]
F4IQJ4	2.8e-22	70.49	Gibberellin-regulated protein 11 OS=Arabidopsis thaliana OX=3702 GN=GASA11 PE=3 ...	[more]
P46689	3.7e-22	72.13	Gibberellin-regulated protein 1 OS=Arabidopsis thaliana OX=3702 GN=GASA1 PE=2 SV...	[more]

BLAST of CsaV3_2G029490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNS5	7.7e-31	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G368260 PE=3 SV=1	[more]
A0A1S3BBY7	2.2e-30	98.36	snakin-2-like OS=Cucumis melo OX=3656 GN=LOC103488041 PE=3 SV=1	[more]
A0A6J1CRW3	3.9e-27	91.80	snakin-2-like OS=Momordica charantia OX=3673 GN=LOC111014004 PE=3 SV=1	[more]
A0A6J1KTY1	8.8e-27	88.52	snakin-2-like OS=Cucurbita maxima OX=3661 GN=LOC111496372 PE=3 SV=1	[more]
A0A6J1GJ50	1.5e-26	86.89	snakin-2-like OS=Cucurbita moschata OX=3662 GN=LOC111454338 PE=3 SV=1	[more]

BLAST of CsaV3_2G029490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09600.1	1.8e-24	73.77	GAST1 protein homolog 3	[more]
AT4G09610.1	5.3e-24	73.77	GAST1 protein homolog 2	[more]
AT2G18420.1	2.0e-23	70.49	Gibberellin-regulated family protein	[more]
AT1G75750.1	2.6e-23	72.13	GAST1 protein homolog 1	[more]
AT1G75750.2	2.6e-23	72.13	GAST1 protein homolog 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003854	Gibberellin regulated protein	PFAM	PF02704	GASA	coord: 2..61 e-value: 1.2E-22 score: 79.8
None	No IPR available	PANTHER	PTHR23201:SF67	SNAKIN-2-LIKE	coord: 1..61
None	No IPR available	PANTHER	PTHR23201	EXTENSIN, PROLINE-RICH PROTEIN	coord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G029490.1	CsaV3_2G029490.1	mRNA