CsaV3_2G029470 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G029470
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2: 19311270 .. 19312181 (+)
RNA-Seq Expression	CsaV3_2G029470
Synteny	CsaV3_2G029470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAATCCAGCCGTTTCGACGAGGCCAAAATCAAACGGAGCAAACAGCTTCGTCGTTCACGTGAAGGATGATCAAGATGATTACAGAGGAGGAAGTCCGGCCGAAAGAATCTCTCCGGCGAGGATTCTGAGCCGGATCCGCCGTGTTTTTATGCGATTCATATTCTATTTACCTTCTCGAGGTTCGGCGGCGGCGGCTGCGGCGGCGTTGAAGCAGAGAAATCTGGAGAAATTTGAACCGCCGAAGACTTCCTGCAGTTCGAGTTACTCGTCTTACTCGCATTACAATGAAGCCATTGCCGATTGTATTGAGTTCTTAAACAAATCGTCGCAGGATCAAATCGGCGTCGATGAAGGCCGAATTTCCGATGCAAATGCGATGGTATGAGATAACATTGAATATGATGATATAATGATGCACATACATGTACGTATACACAGGAAGCAGTAATTCGATGTTGAATAATCGTTTCGATTTCTGAATTTTGAGGTGTCAACGAACAAGTTTAATCGTCGAGTTCGATTTTAAATCTGTTTTTTCTTTACAAACTGCCTTGAGATTGAAACAGAGTATCATTGGTTGTTGCTTATTTCAGTTTCTAATTTCTTCTTCACATTTGGACGGAAGTTTTAGTTAATCTCTATTCTTGCACGAAATGATTTGACAATATGTTTAGACGTGAAAAAAAAAAAAAAACTTGGATGGATAATAATATGCACCAATCTCGTATTTACTACAGAAACAATCAAATGTGTGATAGAGAGATGATAAATATATGAGATAGAAATGTCACAAGATGCACCAAACAATATTACTTACATTTTTATGCCAAAAAAAACAATTTCACTTACAAGTCAGGGTCCAATATGGAAGCTTGAGGGGGAAAAAAAGTTTATGGCTGAAGTTTGA

mRNA sequence

ATGAAGAATCCAGCCGTTTCGACGAGGCCAAAATCAAACGGAGCAAACAGCTTCGTCGTTCACGTGAAGGATGATCAAGATGATTACAGAGGAGGAAGTCCGGCCGAAAGAATCTCTCCGGCGAGGATTCTGAGCCGGATCCGCCGTGTTTTTATGCGATTCATATTCTATTTACCTTCTCGAGGTTCGGCGGCGGCGGCTGCGGCGGCGTTGAAGCAGAGAAATCTGGAGAAATTTGAACCGCCGAAGACTTCCTGCAGTTCGAGTTACTCGTCTTACTCGCATTACAATGAAGCCATTGCCGATTGTATTGAGTTCTTAAACAAATCGTCGCAGGATCAAATCGGCGTCGATGAAGGCCGAATTTCCGATGCAAATGCGATGGGTCCAATATGGAAGCTTGAGGGGGAAAAAAAGTTTATGGCTGAAGTTTGA

Coding sequence (CDS)

ATGAAGAATCCAGCCGTTTCGACGAGGCCAAAATCAAACGGAGCAAACAGCTTCGTCGTTCACGTGAAGGATGATCAAGATGATTACAGAGGAGGAAGTCCGGCCGAAAGAATCTCTCCGGCGAGGATTCTGAGCCGGATCCGCCGTGTTTTTATGCGATTCATATTCTATTTACCTTCTCGAGGTTCGGCGGCGGCGGCTGCGGCGGCGTTGAAGCAGAGAAATCTGGAGAAATTTGAACCGCCGAAGACTTCCTGCAGTTCGAGTTACTCGTCTTACTCGCATTACAATGAAGCCATTGCCGATTGTATTGAGTTCTTAAACAAATCGTCGCAGGATCAAATCGGCGTCGATGAAGGCCGAATTTCCGATGCAAATGCGATGGGTCCAATATGGAAGCTTGAGGGGGAAAAAAAGTTTATGGCTGAAGTTTGA

Protein sequence

MKNPAVSTRPKSNGANSFVVHVKDDQDDYRGGSPAERISPARILSRIRRVFMRFIFYLPSRGSAAAAAAALKQRNLEKFEPPKTSCSSSYSSYSHYNEAIADCIEFLNKSSQDQIGVDEGRISDANAMGPIWKLEGEKKFMAEV*

Homology

[Close]

BLAST of CsaV3_2G029470 vs. NCBI nr
Match: KAE8652124.1 (hypothetical protein Csa_022629 [Cucumis sativus])

HSP 1 Score: 288.5 bits (737), Expect = 3.2e-74
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MKNPAVSTRPKSNGANSFVVHVKDDQDDYRGGSPAERISPARILSRIRRVFMRFIFYLPS 60
           MKNPAVSTRPKSNGANSFVVHVKDDQDDYRGGSPAERISPARILSRIRRVFMRFIFYLPS
Sbjct: 1   MKNPAVSTRPKSNGANSFVVHVKDDQDDYRGGSPAERISPARILSRIRRVFMRFIFYLPS 60

Query: 61  RGSAAAAAAALKQRNLEKFEPPKTSCSSSYSSYSHYNEAIADCIEFLNKSSQDQIGVDEG 120
           RGSAAAAAAALKQRNLEKFEPPKTSCSSSYSSYSHYNEAIADCIEFLNKSSQDQIGVDEG
Sbjct: 61  RGSAAAAAAALKQRNLEKFEPPKTSCSSSYSSYSHYNEAIADCIEFLNKSSQDQIGVDEG 120

Query: 121 RISDANAMGPIWKLEGEKKFMAEV 145
           RISDANAMGPIWKLEGEKKFMAEV
Sbjct: 121 RISDANAMGPIWKLEGEKKFMAEV 144

[Close]

BLAST of CsaV3_2G029470 vs. NCBI nr
Match: KAA0065168.1 (hypothetical protein E6C27_scaffold82G005050 [Cucumis melo var. makuwa])

HSP 1 Score: 236.9 bits (603), Expect = 1.1e-58
Identity = 120/133 (90.23%), Postives = 125/133 (93.98%), Query Frame = 0


Query: 1   MKNPAVSTRPKSNGANSFVVHVKDDQDDYRGGSPAERISPARILSRIRRVFMRFIFYLPS 60
           MKNPAVSTRPKSNGAN+FV+HVKDDQDDYRGGSPA RISPARI+SRIRRV MRFIFYLPS
Sbjct: 1   MKNPAVSTRPKSNGANTFVIHVKDDQDDYRGGSPAPRISPARIMSRIRRVLMRFIFYLPS 60

Query: 61  RGSAAAAAA-----ALKQRNLEKFEPPKTSCSSSYSSYSHYNEAIADCIEFLNKSSQDQI 120
           RGS+AAAAA     ALKQ+NLEKFEPPKTSCSSSYSSYSHYNEAIADCIEF NKSSQDQI
Sbjct: 61  RGSSAAAAAAGPFTALKQKNLEKFEPPKTSCSSSYSSYSHYNEAIADCIEFFNKSSQDQI 120

Query: 121 GVDEGRISDANAM 129
           GVDEGRISDANAM
Sbjct: 121 GVDEGRISDANAM 133

[Close]

BLAST of CsaV3_2G029470 vs. NCBI nr
Match: XP_022996993.1 (uncharacterized protein LOC111492057 [Cucurbita maxima])

HSP 1 Score: 194.1 bits (492), Expect = 8.2e-46
Identity = 97/130 (74.62%), Postives = 112/130 (86.15%), Query Frame = 0


Query: 2   KNPAVSTRPKSNGANSFVVHVKDDQDDYRGGSPAERISPARILSRIRRVFMRFIFYLPSR 61
           KNPAVS RPKSNGANSF+++V+DDQ+DYRGGSP   ISP R LSRIRR+ MRF+FY PSR
Sbjct: 3   KNPAVSIRPKSNGANSFIINVEDDQEDYRGGSPGVSISPVRFLSRIRRILMRFMFYFPSR 62

Query: 62  GSAAAAAAAL---KQRNLEKFEPPKTSCSSSYSSYSHYNEAIADCIEFLNKSSQDQIGVD 121
           GS+++ ++++   KQRNLEKFEPPKTSCSS+YSSYSHYNEAIADCIEF NKSSQDQIG  
Sbjct: 63  GSSSSPSSSIMASKQRNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSSQDQIG-- 122

Query: 122 EGRISDANAM 129
              ISDANAM
Sbjct: 123 ---ISDANAM 127

[Close]

BLAST of CsaV3_2G029470 vs. NCBI nr
Match: KAG7029433.1 (hypothetical protein SDJN02_07772, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193.0 bits (489), Expect = 1.8e-45
Identity = 98/135 (72.59%), Postives = 115/135 (85.19%), Query Frame = 0


Query: 2   KNPAVSTRPKSNGANSFVVHVKDDQDDYRGGSPAERISPARILSRIRRVFMRFIFYLPSR 61
           KNPAVS R KSNGANSF+++V+DDQ+DYRGGSP   ISPAR LSRIRR+ MRF+FY PSR
Sbjct: 3   KNPAVSIRQKSNGANSFIINVEDDQEDYRGGSPGVSISPARFLSRIRRILMRFMFYFPSR 62

Query: 62  GSAAAAAAAL---KQRNLEKFEPPKTSCSSSYSSYSHYNEAIADCIEFLNKSSQDQIGVD 121
           GS+ ++++++   K+RNLEKFEPPKTSCSS+YSSYSHYNEAIADCIEF NKSSQDQIG  
Sbjct: 63  GSSPSSSSSIMASKRRNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSSQDQIG-- 122

Query: 122 EGRISDANAMGPIWK 134
              ISDANAM  +WK
Sbjct: 123 ---ISDANAM-VLWK 131

[Close]

BLAST of CsaV3_2G029470 vs. NCBI nr
Match: KAG6598497.1 (hypothetical protein SDJN03_08275, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 193.0 bits (489), Expect = 1.8e-45
Identity = 98/135 (72.59%), Postives = 115/135 (85.19%), Query Frame = 0


Query: 2   KNPAVSTRPKSNGANSFVVHVKDDQDDYRGGSPAERISPARILSRIRRVFMRFIFYLPSR 61
           KNPAVS R KSNGANSF+++V+DDQ+D+RGGSP   ISPAR LSRIRR+ MRF+FY PSR
Sbjct: 3   KNPAVSIRQKSNGANSFIINVEDDQEDFRGGSPGVSISPARFLSRIRRILMRFMFYFPSR 62

Query: 62  GSAAAAAAAL---KQRNLEKFEPPKTSCSSSYSSYSHYNEAIADCIEFLNKSSQDQIGVD 121
           GS+ ++++++   KQRNLEKFEPPKTSCSS+YSSYSHYNEAIADCIEF NKSSQDQIG  
Sbjct: 63  GSSPSSSSSIMASKQRNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSSQDQIG-- 122

Query: 122 EGRISDANAMGPIWK 134
              ISDANAM  +WK
Sbjct: 123 ---ISDANAM-VLWK 131

[Close]

BLAST of CsaV3_2G029470 vs. ExPASy TrEMBL
Match: A0A0A0LPF9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G368240 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 4.2e-64
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MKNPAVSTRPKSNGANSFVVHVKDDQDDYRGGSPAERISPARILSRIRRVFMRFIFYLPS 60
           MKNPAVSTRPKSNGANSFVVHVKDDQDDYRGGSPAERISPARILSRIRRVFMRFIFYLPS
Sbjct: 1   MKNPAVSTRPKSNGANSFVVHVKDDQDDYRGGSPAERISPARILSRIRRVFMRFIFYLPS 60

Query: 61  RGSAAAAAAALKQRNLEKFEPPKTSCSSSYSSYSHYNEAIADCIEFLNKSSQDQIGVDEG 120
           RGSAAAAAAALKQRNLEKFEPPKTSCSSSYSSYSHYNEAIADCIEFLNKSSQDQIGVDEG
Sbjct: 61  RGSAAAAAAALKQRNLEKFEPPKTSCSSSYSSYSHYNEAIADCIEFLNKSSQDQIGVDEG 120

Query: 121 RISDANAM 129
           RISDANAM
Sbjct: 121 RISDANAM 128

[Close]

BLAST of CsaV3_2G029470 vs. ExPASy TrEMBL
Match: A0A5A7VC16 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005050 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 5.4e-59
Identity = 120/133 (90.23%), Postives = 125/133 (93.98%), Query Frame = 0


Query: 1   MKNPAVSTRPKSNGANSFVVHVKDDQDDYRGGSPAERISPARILSRIRRVFMRFIFYLPS 60
           MKNPAVSTRPKSNGAN+FV+HVKDDQDDYRGGSPA RISPARI+SRIRRV MRFIFYLPS
Sbjct: 1   MKNPAVSTRPKSNGANTFVIHVKDDQDDYRGGSPAPRISPARIMSRIRRVLMRFIFYLPS 60

Query: 61  RGSAAAAAA-----ALKQRNLEKFEPPKTSCSSSYSSYSHYNEAIADCIEFLNKSSQDQI 120
           RGS+AAAAA     ALKQ+NLEKFEPPKTSCSSSYSSYSHYNEAIADCIEF NKSSQDQI
Sbjct: 61  RGSSAAAAAAGPFTALKQKNLEKFEPPKTSCSSSYSSYSHYNEAIADCIEFFNKSSQDQI 120

Query: 121 GVDEGRISDANAM 129
           GVDEGRISDANAM
Sbjct: 121 GVDEGRISDANAM 133

[Close]

BLAST of CsaV3_2G029470 vs. ExPASy TrEMBL
Match: A0A6J1KCK5 (uncharacterized protein LOC111492057 OS=Cucurbita maxima OX=3661 GN=LOC111492057 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 4.0e-46
Identity = 97/130 (74.62%), Postives = 112/130 (86.15%), Query Frame = 0


Query: 2   KNPAVSTRPKSNGANSFVVHVKDDQDDYRGGSPAERISPARILSRIRRVFMRFIFYLPSR 61
           KNPAVS RPKSNGANSF+++V+DDQ+DYRGGSP   ISP R LSRIRR+ MRF+FY PSR
Sbjct: 3   KNPAVSIRPKSNGANSFIINVEDDQEDYRGGSPGVSISPVRFLSRIRRILMRFMFYFPSR 62

Query: 62  GSAAAAAAAL---KQRNLEKFEPPKTSCSSSYSSYSHYNEAIADCIEFLNKSSQDQIGVD 121
           GS+++ ++++   KQRNLEKFEPPKTSCSS+YSSYSHYNEAIADCIEF NKSSQDQIG  
Sbjct: 63  GSSSSPSSSIMASKQRNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSSQDQIG-- 122

Query: 122 EGRISDANAM 129
              ISDANAM
Sbjct: 123 ---ISDANAM 127

[Close]

BLAST of CsaV3_2G029470 vs. ExPASy TrEMBL
Match: A0A6J1CRC4 (uncharacterized protein LOC111014042 OS=Momordica charantia OX=3673 GN=LOC111014042 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 7.3e-40
Identity = 91/128 (71.09%), Postives = 105/128 (82.03%), Query Frame = 0


Query: 2   KNPAVSTRPKSNGANSFVVHVKDDQDDYRGGSPAERISPARILSRIRRVFMRFIFYLPSR 61
           +NP V    K NGA+ FV+HV+ DQ+DYRGGS    +SPARILSRIRR+FMRFIFY PSR
Sbjct: 5   ENPTVPISHKPNGADGFVIHVR-DQEDYRGGSSGVSLSPARILSRIRRMFMRFIFYFPSR 64

Query: 62  GSAAAAAAALKQRNLEKFEPPKTSCSSSYSSYSHYNEAIADCIEFLNKSS-QDQIGVDEG 121
           GS+++   A +QRNLEKFEPPKTSCSS+YSSYSHY+EAIADCIEF NKSS Q+QIGV  G
Sbjct: 65  GSSSSPIMASRQRNLEKFEPPKTSCSSNYSSYSHYSEAIADCIEFFNKSSLQEQIGVG-G 124

Query: 122 RISDANAM 129
           R SD NAM
Sbjct: 125 RNSDGNAM 130

[Close]

BLAST of CsaV3_2G029470 vs. ExPASy TrEMBL
Match: A0A6A1UVD7 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR8G002767 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 3.4e-21
Identity = 61/119 (51.26%), Postives = 82/119 (68.91%), Query Frame = 0


Query: 15  ANSFVVHVKDDQDDYRGGSPAE--------RISPARILSRIRRVFMRFIFYLPSRGSAAA 74
           A SFV+ V+  +   R  +P +          S  ++ +R R++ MR +F LPSRGS+AA
Sbjct: 8   AESFVIQVRGCEAVDRHQAPHQTSVDSSEFNFSAMKLFNRFRKILMRLLFSLPSRGSSAA 67

Query: 75  AA-AALKQRNLEKFEPPKTSCSSSYSSYSHYNEAIADCIEFLNKSSQDQIGVDEGRISD 125
           +   A +Q+N ++FEPPKTSCSS YSS+SHYNEAIADCIEF NKSS D+I +D+GR SD
Sbjct: 68  SGMTASRQKNCDRFEPPKTSCSSYYSSHSHYNEAIADCIEFFNKSSHDEI-LDDGRKSD 125

[Close]

BLAST of CsaV3_2G029470 vs. TAIR 10
Match: AT1G75717.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 61.6 bits (148), Expect = 5.9e-10
Identity = 35/82 (42.68%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 42  RILSRIRRVFMRFIFYLPSRGSAAAAAAALKQRNLEKFEPPKTSCSSS-YSSYSHYNEAI 101
           ++  ++ ++ MR I +     S        +  + E+FEPPK SCSSS YSS+ HY+EAI
Sbjct: 2   KLFHKLGKILMRLIDFTLHSSSRRQKKNNSRSGDGERFEPPKISCSSSYYSSHVHYSEAI 61

Query: 102 ADCIEFLNKSSQDQIGVDEGRI 123
           ADCIEF NKSS       E R+
Sbjct: 62  ADCIEFFNKSSAMSCEDHEARL 83

The following BLAST results are available for this feature:

BLAST of CsaV3_2G029470 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652124.1	3.2e-74	100.00	hypothetical protein Csa_022629 [Cucumis sativus]	[more]
KAA0065168.1	1.1e-58	90.23	hypothetical protein E6C27_scaffold82G005050 [Cucumis melo var. makuwa]	[more]
XP_022996993.1	8.2e-46	74.62	uncharacterized protein LOC111492057 [Cucurbita maxima]	[more]
KAG7029433.1	1.8e-45	72.59	hypothetical protein SDJN02_07772, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6598497.1	1.8e-45	72.59	hypothetical protein SDJN03_08275, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsaV3_2G029470 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G029470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPF9	4.2e-64	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G368240 PE=4 SV=1	[more]
A0A5A7VC16	5.4e-59	90.23	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1KCK5	4.0e-46	74.62	uncharacterized protein LOC111492057 OS=Cucurbita maxima OX=3661 GN=LOC111492057...	[more]
A0A6J1CRC4	7.3e-40	71.09	uncharacterized protein LOC111014042 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6A1UVD7	3.4e-21	51.26	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR8G002767 PE=4 SV=1	[more]

BLAST of CsaV3_2G029470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75717.1	5.9e-10	42.68	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35111:SF5	F10A5.9	coord: 15..125
None	No IPR available	PANTHER	PTHR35111	F10A5.9-RELATED	coord: 15..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G029470.1	CsaV3_2G029470.1	mRNA