CsaV3_2G028700 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G028700
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	SANT domain-containing protein
Location	chr2: 18834373 .. 18837134 (-)
RNA-Seq Expression	CsaV3_2G028700
Synteny	CsaV3_2G028700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGAGGGAGAGAGGGTGGAGATTCAGCCGGTAATGGAGGAGGAGGAGGCTGCGACGTACGCCACACATAGTAGATGTTCGGGTGGTGGAGGAGAAGGTTATTGCAACCACAAATGGTGAGATGGTAGAGATTAAGGTGACGGAGGATGTTATTAATTTTTTAAAAAATAGTTTTGTAAATTTTTATGTGTAATCATAATTATATTATACTGTCCCATTTATGTAAATTCATTAAAATAATATATAGTTTTTTTTTTTATTATTGAAATAAGTGGATATGACTTAAAGAGAAAAACTATGGTGAAAAATGCAACATTAATTAATTAGAATCCAATTTAATGGAATTGAAAGTTTTAGAATAAAAATCAACAATGTGGCAACAAAATACATATATATATATATATACCAAAGTTTGGTTATATATAAATCATTTCCAACTTTAAGAGACATGGCCAAGAAAAAGAGAATATATTTGGAATCACTTTTATAAAATGTATCACTATTTCAATATATATATCTTTTAGATATATGAGATATGGAATCAAGCCAACTTGAGGGACTATTTTTGGCAAATGATTGTTTTGAATTTTTTTTTCCTTTTTTCTTTTTCGTTGAATTCATTCATTATTATAAAATGATATCGAAAAAACTTTTAAATCTTAATTGTTGATATATGCCTTTGATATCAACAAAAGATTAGTTTAACTGATATCTGTGTGTACTCTTATCTCTAAGTTTGTGTTCGGTAATTGATAGAAATGACATTACTACAAGAAAACAAACATGATAGTGGAAAATTGTCGTCAAACATTATATTCAATATTTTCGTGAAAGATATCTTTATAAAAAAAAAAAAAGAAAGGTTAGATTCTTGAAAGGTTATTTTGTAAGTGAAAGCATTTGATCAAAGGAAAGCAAAGGAAGAAGAATCTTAGAAGTGATTTTGGGTTTGATTCCACATAAAAAAGAAAGGCAGAAGAGTACTAGTTGAGAAAAGGCTAAGCATTGCATCTTCAACCAGCTCATATCTAAAAGTGAGATCTGACCCACATTGCATTCAACTTGCCATTCAACCAATACCCTTCTTTCTTACTTACATATAAGTGCTTGTTTCATGTGCTTTTGAAGGTATAACGAATTTTACTCCCTTTTTAATCTCTATATTTTGCCTATTATTGTTGTTGTTATTATGTGTGTTGTTTTTATTTTAAATGATCGCTATCAAATAGACAGGAAAATGATTTTGGAAAACAACTCGAAAAAGATAAAAGAGGGGAAATTCTCATCCCGACGAACGTGGAATGATAAGGATTCCGAAATATATACAAAATCCCTTTTGTTTGTGATTCTCTTTCAAATTCCTTATTGACTTTGACTCCTCCAATTCTGGAAAACAATATAAGTTTTTCTCATTAATTAATACTTCTTCCTAAACTCAAAACTCAAACTCATTCATTCTTAATGCTTTACCTAAAACATTACTATATTTTTTTGGAGGATAAATTTTTTTATCTCTAAAATATTATTAAAGGGTATTTTTAAAAAATAGCAAAATATTAAAACTATTTTAAAAGTATAATATTAAAATTCTTCAATTTCTTTAGTTTCTTTTGTATATTTTGTAAATAGTTCATTTTTATATATTTGAATTAATGCTTTGAAAAATAAAGTAAATTTTACAAAATTATTTTCTAAGAAAACATTTCCAAATATAGTAAGGAAATTTAAAATATCTTAAATTAAAAGAAAAAACCATTAAATCCTCTGTGGTTTTCAATTATTTGTTATTTATCACAATTCATCCTTTTAAAATTCCCTTTTTTTTTCTTTGAATTAATTGTTTTTAAAAAATAAAGTCAATATAAGGCTTTAACGTTGTTTTTTATTTTAGTACAATCAAAATAAAGAGACTAAAATCACTTCGTGGACAACACAAACAAATGCAAATGTCAATTGAATTGCTAACTGTGCTTTTTTTTTCTTCCAACTTTTTATTGACTTTAAAACGTTGGAGTTTAGATATCCTGATCATTTCGAGGATATACAAATTTGATTGATTTTTGGTTCACAAAAAGGTTTGCTTCATATCAAAATTACCAATTTTGTATAGCTATTTTTACATAAACTCTCAGGTTGATATATAAACTGCCATTTTATGCCAACTCATACTAAAAATGCAATACAATATCAAATCTAAATCCAAGATTTAATTTCATAATAACAATAATCAAAGATTTTTTTAAAAAAAAAATTGGTGGATATCCATTAATTTTGACCCAGAGGCAACTTGCCAAGGAAAAAGGTGGTGGAAGAAAAGAATGTATTTTGAAGAATAACTTTATGTCACATTTCAAAAGAAAAAAAAAAACACTTAAGTTTGTTTTTAATTAATATTACTCTATGTTGTCTATAAATAGAGAAGCAATGAGAACAAAGATACACATAGAATAACTAAAATGGCATCATCTACTACTTCTTCTTCTTCATCTTCATCTTCAAGCTGGAGTTCAAAGCAAAACAAAATGTTTGAAAATGCCCTTACAGTGTACGACAAGGACTCGCCCGACCGGTGGCAGAAGCTGGCAAGAGCAGTCGGCGGGAAGACGGCAGACGAGGTGAAGAGACACTATGAGATGCTGGTTGAGGACGTCCATAATATTGAGACTGGCAAAGTTCCTTTGCCTAATTACTCTAAACATTATTCTTACAACAACAACTTTGTTGATGAAGAACAAAGGCAATCTCTCTTTCACTTTTAA

mRNA sequence

ATGGTTGAGGGAGAGAGGGTGGAGATTCAGCCGGTAATGGAGGAGGAGGAGGCTGCGACGTACGCCACACATAGTAGATGTTCGGGTGGTGGAGGAGAAGTGTACGACAAGGACTCGCCCGACCGGTGGCAGAAGCTGGCAAGAGCAGTCGGCGGGAAGACGGCAGACGAGGTGAAGAGACACTATGAGATGCTGGTTGAGGACGTCCATAATATTGAGACTGGCAAAGTTCCTTTGCCTAATTACTCTAAACATTATTCTTACAACAACAACTTTGTTGATGAAGAACAAAGGCAATCTCTCTTTCACTTTTAA

Coding sequence (CDS)

ATGGTTGAGGGAGAGAGGGTGGAGATTCAGCCGGTAATGGAGGAGGAGGAGGCTGCGACGTACGCCACACATAGTAGATGTTCGGGTGGTGGAGGAGAAGTGTACGACAAGGACTCGCCCGACCGGTGGCAGAAGCTGGCAAGAGCAGTCGGCGGGAAGACGGCAGACGAGGTGAAGAGACACTATGAGATGCTGGTTGAGGACGTCCATAATATTGAGACTGGCAAAGTTCCTTTGCCTAATTACTCTAAACATTATTCTTACAACAACAACTTTGTTGATGAAGAACAAAGGCAATCTCTCTTTCACTTTTAA

Protein sequence

MVEGERVEIQPVMEEEEAATYATHSRCSGGGGEVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQRQSLFHF*

Homology

[Close]

BLAST of CsaV3_2G028700 vs. NCBI nr
Match: KAE8652106.1 (hypothetical protein Csa_022050 [Cucumis sativus])

HSP 1 Score: 216.9 bits (551), Expect = 8.6e-53
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MVEGERVEIQPVMEEEEAATYATHSRCSGGGGEVYDKDSPDRWQKLARAVGGKTADEVKR 60
           MVEGERVEIQPVMEEEEAATYATHSRCSGGGGEVYDKDSPDRWQKLARAVGGKTADEVKR
Sbjct: 1   MVEGERVEIQPVMEEEEAATYATHSRCSGGGGEVYDKDSPDRWQKLARAVGGKTADEVKR 60

Query: 61  HYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQRQSLFHF 105
           HYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQRQSLFHF
Sbjct: 61  HYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQRQSLFHF 104

[Close]

BLAST of CsaV3_2G028700 vs. NCBI nr
Match: XP_031737271.1 (protein RADIALIS-like 4 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 7.8e-30
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 34 VYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFV 93
          VYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFV
Sbjct: 30 VYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFV 89

Query: 94 DEEQR 99
          DEEQR
Sbjct: 90 DEEQR 94

[Close]

BLAST of CsaV3_2G028700 vs. NCBI nr
Match: KAA0065236.1 (protein RADIALIS-like 4 [Cucumis melo var. makuwa])

HSP 1 Score: 137.9 bits (346), Expect = 5.1e-29
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 34  VYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFV 93
           VYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSY NNF+
Sbjct: 8   VYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSY-NNFL 67

Query: 94  DEEQRQSL 102
           DEEQRQSL
Sbjct: 68  DEEQRQSL 74

[Close]

BLAST of CsaV3_2G028700 vs. NCBI nr
Match: XP_008444713.1 (PREDICTED: protein RADIALIS-like 4 [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 2.1e-27
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 34 VYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFV 93
          VYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSY NNF+
Sbjct: 30 VYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSY-NNFL 89

Query: 94 DEEQR 99
          DEEQR
Sbjct: 90 DEEQR 93

[Close]

BLAST of CsaV3_2G028700 vs. NCBI nr
Match: XP_038886301.1 (protein RADIALIS-like 3 [Benincasa hispida])

HSP 1 Score: 123.6 bits (309), Expect = 9.9e-25
Identity = 57/65 (87.69%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 34 VYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFV 93
          VYDKDSPDRWQKLA A+GGKTA+EVK HY+MLVEDVHNIETG+VPLPNYSKHYSY NNF+
Sbjct: 29 VYDKDSPDRWQKLASAIGGKTAEEVKTHYDMLVEDVHNIETGRVPLPNYSKHYSY-NNFL 88

Query: 94 DEEQR 99
          DEEQR
Sbjct: 89 DEEQR 92

[Close]

BLAST of CsaV3_2G028700 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.7e-17
Identity = 40/66 (60.61%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 34  VYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFV 93
           VYDKD+PDRW  +A+AVGGKT +EVKRHY++LVED+ NIETG+VPLPNY    S + +  
Sbjct: 26  VYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRVPLPNYKTFESNSRSIN 85

Query: 94  DEEQRQ 100
           D + R+
Sbjct: 86  DFDTRK 91

[Close]

BLAST of CsaV3_2G028700 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 9.6e-15
Identity = 33/65 (50.77%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 35  YDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVD 94
           YD+D+P+RWQ +A+ VGGKT +EVKRHYE+LV+D+++IE G VP PNY       N  + 
Sbjct: 29  YDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINSIENGHVPFPNYRTSGGCTNGRLS 88

Query: 95  EEQRQ 100
           +E+++
Sbjct: 89  QEEKR 93

[Close]

BLAST of CsaV3_2G028700 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.1e-14
Identity = 34/49 (69.39%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 34 VYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY 83
          VYDKD+PDRW  +ARAV G+T +EVK+HYE+LVED+  IE+GKVP PNY
Sbjct: 25 VYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPFPNY 73

[Close]

BLAST of CsaV3_2G028700 vs. ExPASy Swiss-Prot
Match: Q1G3C4 (Protein RADIALIS-like 4 OS=Arabidopsis thaliana OX=3702 GN=RL4 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.7e-14
Identity = 32/48 (66.67%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 35 YDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY 83
          +DKD+PDRWQK+ARAVGGK+ +EVKRHYE+L+ DV++IE+G+ P P Y
Sbjct: 26 FDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRDVNDIESGRYPQPRY 73

[Close]

BLAST of CsaV3_2G028700 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.2e-14
Identity = 34/49 (69.39%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 34 VYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY 83
          VYDKD+PDRWQ +A+AVG K+A+EVKRHY++LVED+ NIE   VPLP Y
Sbjct: 26 VYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMNIEQDLVPLPKY 74

[Close]

BLAST of CsaV3_2G028700 vs. ExPASy TrEMBL
Match: A0A0A0LNL9 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361640 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 7.4e-34
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 34  VYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFV 93
           VYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFV
Sbjct: 30  VYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFV 89

Query: 94  DEEQRQSLFHF 105
           DEEQRQSLFHF
Sbjct: 90  DEEQRQSLFHF 100

[Close]

BLAST of CsaV3_2G028700 vs. ExPASy TrEMBL
Match: A0A5A7VFX7 (Protein RADIALIS-like 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005770 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.5e-29
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 34  VYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFV 93
           VYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSY NNF+
Sbjct: 8   VYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSY-NNFL 67

Query: 94  DEEQRQSL 102
           DEEQRQSL
Sbjct: 68  DEEQRQSL 74

[Close]

BLAST of CsaV3_2G028700 vs. ExPASy TrEMBL
Match: A0A1S3BBR2 (protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487968 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.0e-27
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 34 VYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFV 93
          VYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSY NNF+
Sbjct: 30 VYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSY-NNFL 89

Query: 94 DEEQR 99
          DEEQR
Sbjct: 90 DEEQR 93

[Close]

BLAST of CsaV3_2G028700 vs. ExPASy TrEMBL
Match: A0A6J1K580 (protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111492400 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.5e-22
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 34 VYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSK--HYSYNNN 93
          VYDKDSPDRWQKLA +VGGKTA+EVKRHYEMLVEDVHNIETG+VPLPNYSK   +  +N 
Sbjct: 27 VYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPSKHCSSNT 86

Query: 94 FVDEEQR 99
          F+DEEQR
Sbjct: 87 FLDEEQR 93

[Close]

BLAST of CsaV3_2G028700 vs. ExPASy TrEMBL
Match: A0A6J1KQS6 (protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111496369 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.5e-21
Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 34 VYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYS-KHYSYNNNF 93
          VYDKDSPDRWQKLA AVGGKTA+EVKRHYEMLVEDVHNIE G++PLPNYS     Y +NF
Sbjct: 28 VYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSKQYYSNF 87

Query: 94 VDEEQR 99
          +DEEQR
Sbjct: 88 LDEEQR 93

[Close]

BLAST of CsaV3_2G028700 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 89.4 bits (220), Expect = 1.9e-18
Identity = 40/66 (60.61%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 34  VYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFV 93
           VYDKD+PDRW  +A+AVGGKT +EVKRHY++LVED+ NIETG+VPLPNY    S + +  
Sbjct: 26  VYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRVPLPNYKTFESNSRSIN 85

Query: 94  DEEQRQ 100
           D + R+
Sbjct: 86  DFDTRK 91

[Close]

BLAST of CsaV3_2G028700 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 89.0 bits (219), Expect = 2.5e-18
Identity = 40/65 (61.54%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 34 VYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFV 93
          VYDKD+PDRW  +A+AVGGKT +EVKRHY++LVED+ NIETG+VPLPNY    S + +  
Sbjct: 26 VYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRVPLPNYKTFESNSRSIN 85

Query: 94 DEEQR 99
          D + R
Sbjct: 86 DFDTR 90

[Close]

BLAST of CsaV3_2G028700 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 80.9 bits (198), Expect = 6.8e-16
Identity = 33/65 (50.77%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 35  YDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVD 94
           YD+D+P+RWQ +A+ VGGKT +EVKRHYE+LV+D+++IE G VP PNY       N  + 
Sbjct: 29  YDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINSIENGHVPFPNYRTSGGCTNGRLS 88

Query: 95  EEQRQ 100
           +E+++
Sbjct: 89  QEEKR 93

[Close]

BLAST of CsaV3_2G028700 vs. TAIR 10
Match: AT2G18328.1 (RAD-like 4 )

HSP 1 Score: 79.0 bits (193), Expect = 2.6e-15
Identity = 32/48 (66.67%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 35 YDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY 83
          +DKD+PDRWQK+ARAVGGK+ +EVKRHYE+L+ DV++IE+G+ P P Y
Sbjct: 26 FDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRDVNDIESGRYPQPRY 73

[Close]

BLAST of CsaV3_2G028700 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 78.2 bits (191), Expect = 4.4e-15
Identity = 34/49 (69.39%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 34 VYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY 83
          VYDKD+PDRWQ +A+AVG K+A+EVKRHY++LVED+ NIE   VPLP Y
Sbjct: 26 VYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMNIEQDLVPLPKY 74

The following BLAST results are available for this feature:

BLAST of CsaV3_2G028700 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652106.1	8.6e-53	100.00	hypothetical protein Csa_022050 [Cucumis sativus]	[more]
XP_031737271.1	7.8e-30	100.00	protein RADIALIS-like 4 [Cucumis sativus]	[more]
KAA0065236.1	5.1e-29	97.06	protein RADIALIS-like 4 [Cucumis melo var. makuwa]	[more]
XP_008444713.1	2.1e-27	96.92	PREDICTED: protein RADIALIS-like 4 [Cucumis melo]	[more]
XP_038886301.1	9.9e-25	87.69	protein RADIALIS-like 3 [Benincasa hispida]	[more]

BLAST of CsaV3_2G028700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1A173	2.7e-17	60.61	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
F4JVB8	9.6e-15	50.77	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q58FS3	2.1e-14	69.39	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q1G3C4	3.7e-14	66.67	Protein RADIALIS-like 4 OS=Arabidopsis thaliana OX=3702 GN=RL4 PE=2 SV=1	[more]
Q8GW75	6.2e-14	69.39	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]

BLAST of CsaV3_2G028700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNL9	7.4e-34	100.00	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361640 PE=4 S...	[more]
A0A5A7VFX7	2.5e-29	97.06	Protein RADIALIS-like 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3BBR2	1.0e-27	96.92	protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487968 PE=4 SV=1	[more]
A0A6J1K580	6.5e-22	80.60	protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111492400 PE=4 SV=1	[more]
A0A6J1KQS6	2.5e-21	80.30	protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111496369 PE=4 SV=1	[more]

BLAST of CsaV3_2G028700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75250.2	1.9e-18	60.61	RAD-like 6	[more]
AT1G75250.1	2.5e-18	61.54	RAD-like 6	[more]
AT4G39250.1	6.8e-16	50.77	RAD-like 1	[more]
AT2G18328.1	2.6e-15	66.67	RAD-like 4	[more]
AT1G19510.1	4.4e-15	69.39	RAD-like 5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.10.60		coord: 14..79 e-value: 1.9E-14 score: 55.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..39
None	No IPR available	PANTHER	PTHR43952:SF52	MYB FAMILY TRANSCRIPTION FACTOR	coord: 34..100
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 34..100
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 40..66 e-value: 0.00281736 score: 31.3918
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 34..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G028700.1	CsaV3_2G028700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003700	DNA-binding transcription factor activity