CsaV3_2G027790 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G027790
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	chr2: 18395695 .. 18397045 (+)
RNA-Seq Expression	CsaV3_2G027790
Synteny	CsaV3_2G027790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTTTCATTTTCAGCAGCCACTGCCTTACATCTCCACCCTTCTTCTTCATCTTACACTCCCTTATTCAACCCTAGCCAGTTCCTCCGCCTCCGATCCCCTTCCCGCCGCACACTATTAATAGCTCATGCCCAATCGGAGCACCGTCAAACATGGCTTCCCGGCCTCGACCCGCCACCGCATCTCGACGGAACCCTTGCTGGGGATTTTGGATTCGACCCACTTGGGCTTGGCGAGGACCCACAAAGCTTGAAGTGGTACGTTCAAGCAGAGCTTGTTCATTGCCGCTTTGCCATGCTCGGCGTTTCTGGAGTTCTTCTCACTGATGTCTGTAACCAATTAGTCTTACATTACCACTCGATAATTGCACAAAACTGGAAACCTTAATTTAAAGATTGATGTTCTTTGTGTTGTGGCAGTTGCTTCGTGTTACAGGGATCAGTGAATTGCCAGTTTGGTATAATGCCGGTGCCGTTGAATATGGTTTTGCCAACAAACGAACTCTTTTCATTGTTCAGCTGCTTTTGATGGGGTTCTAATTCTTCCTTATCCTCCATTTCCTTTCTTTAGGTGTGGCTGTATTCATCACCTTATCTGGTTTTACTTGGCTTTGAAGGTTTGTGGAAACTAAAAGGTATATGGATTTCAAAAGCCCTGGATCTCAAGCACAAGAAGGAACTTTCTTTGGATTAGAAGCTGCCTTTAAAGGTCTCGAGCCCGGGTAATTTACATTTCTCTTGAAATTCTTAGAATGTTAGATAAAATATTGCAACGAAACAGAGTTCCGAAGCTACCTGTAAATTCTATACGAAGGCACCGTCTTACTATTCTGAGTCTCAATTTTTGTGTAACATTCAATTAAAACTCATACTTCAAAGGTAGTTTTGAAATGGTCATAAAAAGTGGAAGGAAGGAGTATGATTTTTTTTTAAAATTAAAGGATCTGAAGTTTATAGGATGCTCTCTTGATCATTTTACCAACTAGAATGCCCTAGAATATGAACAGTTTTGACTTTGAGGGATGATTACCTTGCAGATACCCTGGGGGTCCTCTGTTGAATCCTCTTGGCATTGCTAAAGATATCAAGAATGCTCATGACTGGAAACTCAAGGAGATTAAGAATGGTTAAATTTTCCACTCACATTCTCATCAAATTTTTCGTCTATCGTTTTCCCGGATTAATCTTTGTTCATTCAAATTACAGGACGGCTTGCAATGGTAGCCATGCTTGGGATCTTTGTGCAAGCTTATGTTACTCATACAGGGCCAATAGATAACCTTGTGGAGCACCTTTCTAATCCATGGCACAAGACTATTATCCAGACACTTTCAAGCTCAAGTCCTTAA

mRNA sequence

ATGGCGGTTTCATTTTCAGCAGCCACTGCCTTACATCTCCACCCTTCTTCTTCATCTTACACTCCCTTATTCAACCCTAGCCAGTTCCTCCGCCTCCGATCCCCTTCCCGCCGCACACTATTAATAGCTCATGCCCAATCGGAGCACCGTCAAACATGGCTTCCCGGCCTCGACCCGCCACCGCATCTCGACGGAACCCTTGCTGGGGATTTTGGATTCGACCCACTTGGGCTTGGCGAGGACCCACAAAGCTTGAAGTGGTACGTTCAAGCAGAGCTTGTTCATTGCCGCTTTGCCATGCTCGGCGTTTCTGGAGTTCTTCTCACTGATTTGCTTCGTGTTACAGGGATCAGTGAATTGCCAGTTTGGTATAATGCCGGTGCCGTTGAATATGGTTTTGCCAACAAACGAACTCTTTTCATTGTTCAGCTGCTTTTGATGGGGTTTGTGGAAACTAAAAGGTATATGGATTTCAAAAGCCCTGGATCTCAAGCACAAGAAGGAACTTTCTTTGGATTAGAAGCTGCCTTTAAAGGTCTCGAGCCCGGATACCCTGGGGGTCCTCTGTTGAATCCTCTTGGCATTGCTAAAGATATCAAGAATGCTCATGACTGGAAACTCAAGGAGATTAAGAATGGACGGCTTGCAATGGTAGCCATGCTTGGGATCTTTGTGCAAGCTTATGTTACTCATACAGGGCCAATAGATAACCTTGTGGAGCACCTTTCTAATCCATGGCACAAGACTATTATCCAGACACTTTCAAGCTCAAGTCCTTAA

Coding sequence (CDS)

ATGGCGGTTTCATTTTCAGCAGCCACTGCCTTACATCTCCACCCTTCTTCTTCATCTTACACTCCCTTATTCAACCCTAGCCAGTTCCTCCGCCTCCGATCCCCTTCCCGCCGCACACTATTAATAGCTCATGCCCAATCGGAGCACCGTCAAACATGGCTTCCCGGCCTCGACCCGCCACCGCATCTCGACGGAACCCTTGCTGGGGATTTTGGATTCGACCCACTTGGGCTTGGCGAGGACCCACAAAGCTTGAAGTGGTACGTTCAAGCAGAGCTTGTTCATTGCCGCTTTGCCATGCTCGGCGTTTCTGGAGTTCTTCTCACTGATTTGCTTCGTGTTACAGGGATCAGTGAATTGCCAGTTTGGTATAATGCCGGTGCCGTTGAATATGGTTTTGCCAACAAACGAACTCTTTTCATTGTTCAGCTGCTTTTGATGGGGTTTGTGGAAACTAAAAGGTATATGGATTTCAAAAGCCCTGGATCTCAAGCACAAGAAGGAACTTTCTTTGGATTAGAAGCTGCCTTTAAAGGTCTCGAGCCCGGATACCCTGGGGGTCCTCTGTTGAATCCTCTTGGCATTGCTAAAGATATCAAGAATGCTCATGACTGGAAACTCAAGGAGATTAAGAATGGACGGCTTGCAATGGTAGCCATGCTTGGGATCTTTGTGCAAGCTTATGTTACTCATACAGGGCCAATAGATAACCTTGTGGAGCACCTTTCTAATCCATGGCACAAGACTATTATCCAGACACTTTCAAGCTCAAGTCCTTAA

Protein sequence

MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP*

Homology

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BLAST of CsaV3_2G027790 vs. NCBI nr
Match: XP_004150882.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucumis sativus] >KGN62506.1 hypothetical protein Csa_022315 [Cucumis sativus])

HSP 1 Score: 534.6 bits (1376), Expect = 4.6e-148
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0


Query: 1   MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPP 60
           MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPP
Sbjct: 1   MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPP 60

Query: 61  PHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISEL 120
           PHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISEL
Sbjct: 61  PHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISEL 120

Query: 121 PVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGL 180
           PVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGL
Sbjct: 121 PVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGL 180

Query: 181 EPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVE 240
           EPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVE
Sbjct: 181 EPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVE 240

Query: 241 HLSNPWHKTIIQTLSSSSP 260
           HLSNPWHKTIIQTLSSSSP
Sbjct: 241 HLSNPWHKTIIQTLSSSSP 259

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BLAST of CsaV3_2G027790 vs. NCBI nr
Match: XP_008444623.1 (PREDICTED: photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucumis melo] >KAA0060903.1 photosystem I chlorophyll a/b-binding protein 5 [Cucumis melo var. makuwa])

HSP 1 Score: 506.9 bits (1304), Expect = 1.0e-139
Identity = 245/260 (94.23%), Postives = 253/260 (97.31%), Query Frame = 0


Query: 1   MAVSFSAATALHLHPSSSSYTPLFNP-SQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDP 60
           MAVS SAAT  HLHPSSSS+TPLFNP +QF+RLRSPSR +LLIAHAQSEHRQTWLPGLDP
Sbjct: 1   MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLIAHAQSEHRQTWLPGLDP 60

Query: 61  PPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISE 120
           PP+LDGTL GDFGFDPLGLGEDP SLKWYVQAELVHCRFAMLGV+GVLLTDLLRVTGISE
Sbjct: 61  PPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVTGISE 120

Query: 121 LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKG 180
           LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAF+G
Sbjct: 121 LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFEG 180

Query: 181 LEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV 240
           LEPGYPGGPLLNPLGIAKD+KNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV
Sbjct: 181 LEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV 240

Query: 241 EHLSNPWHKTIIQTLSSSSP 260
           EHLSNPWHKTIIQTLSSSSP
Sbjct: 241 EHLSNPWHKTIIQTLSSSSP 260

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BLAST of CsaV3_2G027790 vs. NCBI nr
Match: XP_038886221.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Benincasa hispida])

HSP 1 Score: 490.0 bits (1260), Expect = 1.3e-134
Identity = 243/262 (92.75%), Postives = 247/262 (94.27%), Query Frame = 0


Query: 1   MAVSFSA----ATALHLHP--SSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWL 60
           MAVS SA    ATA HL P  SSSSYTP FNP+Q LRLRSPSRRTLLIA AQSEHRQTWL
Sbjct: 1   MAVSVSAATARATAFHLQPSSSSSSYTPSFNPNQSLRLRSPSRRTLLIAQAQSEHRQTWL 60

Query: 61  PGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRV 120
           PGLDPPPHLDGTLAGDFGFDPLGLGEDP SLKWYVQAELVH RFAMLGVSG+LLTDLLRV
Sbjct: 61  PGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWYVQAELVHSRFAMLGVSGILLTDLLRV 120

Query: 121 TGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLE 180
           TGISELPVWYNAGAVEYGFANK TLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLE
Sbjct: 121 TGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLE 180

Query: 181 AAFKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGP 240
           AAF+GLEPGYPGGPLLNPLGIAKDIKNAH+WKLKEIKNGRLAMVAMLGIFVQAYVTHTGP
Sbjct: 181 AAFEGLEPGYPGGPLLNPLGIAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVTHTGP 240

Query: 241 IDNLVEHLSNPWHKTIIQTLSS 257
           IDNLVEHLSNPWHKTIIQTLSS
Sbjct: 241 IDNLVEHLSNPWHKTIIQTLSS 262

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BLAST of CsaV3_2G027790 vs. NCBI nr
Match: XP_023001834.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita maxima])

HSP 1 Score: 456.8 bits (1174), Expect = 1.2e-124
Identity = 226/260 (86.92%), Postives = 237/260 (91.15%), Query Frame = 0


Query: 1   MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLI-AHAQSEHRQTWLPGLDP 60
           MAVS SAAT  HL PSSS Y+   +  Q L LRSPSRRT+   A +QS+ RQTWLPGLDP
Sbjct: 1   MAVSLSAATPFHLLPSSSLYSSSLSSKQHL-LRSPSRRTVTAQAQSQSQPRQTWLPGLDP 60

Query: 61  PPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISE 120
           PPHLDGTLAGDFGFDPLGLGEDP SLKW+VQAELVH RFAMLGVSG+LLTDLLRVTGISE
Sbjct: 61  PPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGISE 120

Query: 121 LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKG 180
           LPVWYNAGAVEYGFANK TLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLE+AF+G
Sbjct: 121 LPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESAFEG 180

Query: 181 LEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV 240
           LEPGYPGGPLLNPLG+AKDIKNAH+WKLKEIKNGRLAMVAMLGIFVQAYVT TGPIDNLV
Sbjct: 181 LEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLV 240

Query: 241 EHLSNPWHKTIIQTLSSSSP 260
           EHLSNPWH TII TLSSSSP
Sbjct: 241 EHLSNPWHNTIIHTLSSSSP 259

[Close]

BLAST of CsaV3_2G027790 vs. NCBI nr
Match: XP_022951251.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita moschata] >KAG6585667.1 Photosystem I chlorophyll a/b-binding protein 5, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020573.1 Photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 456.1 bits (1172), Expect = 2.1e-124
Identity = 224/257 (87.16%), Postives = 236/257 (91.83%), Query Frame = 0


Query: 1   MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLI-AHAQSEHRQTWLPGLDP 60
           MAVS SAAT+ HL PSSS Y+   +P Q L LRSPSRRT+   A +QS+ RQTWLPGLDP
Sbjct: 1   MAVSLSAATSFHLLPSSSFYSSSLSPKQHL-LRSPSRRTVTAQAQSQSQPRQTWLPGLDP 60

Query: 61  PPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISE 120
           PPHLDGTLAGDFGFDPLGLGEDP SLKW+VQAELVH RFAMLGVSG+LLTDLLRVTGISE
Sbjct: 61  PPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGISE 120

Query: 121 LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKG 180
           LPVWYNAGAVEYGFANK TLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLE+AF+G
Sbjct: 121 LPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESAFEG 180

Query: 181 LEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV 240
           LEPGYPGGPLLNPLG+AKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVT TGPIDNLV
Sbjct: 181 LEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLV 240

Query: 241 EHLSNPWHKTIIQTLSS 257
           EHLSNPWH T+I TLSS
Sbjct: 241 EHLSNPWHNTVIHTLSS 256

[Close]

BLAST of CsaV3_2G027790 vs. ExPASy Swiss-Prot
Match: Q9C639 (Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA5 PE=1 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 2.0e-101
Identity = 171/210 (81.43%), Postives = 191/210 (90.95%), Query Frame = 0


Query: 50  RQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLT 109
           R TWLPGL+PPP+LDG LAGD+GFDPLGLGEDP+SLKWYVQAELVH RFAMLGV+G+L T
Sbjct: 46  RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFT 105

Query: 110 DLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGT 169
           DLLR TGI  LPVWY AGAV++ FA+ +TL +VQ LLMGF ETKRYMDF SPGSQA+EG+
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGS 165

Query: 170 -FFGLEAAFKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAY 229
            FFGLEAA +GLEPGYPGGPLLNPLG+AKD++NAHDWKLKEIKNGRLAM+AMLG FVQA 
Sbjct: 166 FFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQAS 225

Query: 230 VTHTGPIDNLVEHLSNPWHKTIIQTLSSSS 259
           VTHTGPIDNLVEHLSNPWHKTIIQTL +S+
Sbjct: 226 VTHTGPIDNLVEHLSNPWHKTIIQTLFTST 255

[Close]

BLAST of CsaV3_2G027790 vs. ExPASy Swiss-Prot
Match: Q9SQL2 (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 4.4e-53
Identity = 106/207 (51.21%), Postives = 141/207 (68.12%), Query Frame = 0


Query: 53  WLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLL 112
           WLPGL  P +L G+L GD GFDPLGL EDP++L+W+VQAELV+ R+AMLGV+G+LL ++ 
Sbjct: 56  WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVF 115

Query: 113 RVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTF-- 172
              GI  +P WY AG  EY FA+  TLF+++ +L  +VE +R+ D K+PGS  Q+  F  
Sbjct: 116 TSIGIINVPKWYAAGKEEY-FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQ 175

Query: 173 FGLEAAFKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVT 232
           + L A     E GYPGG + NPL  A  +    + K KEI NGRLAM+A LG  +Q  VT
Sbjct: 176 YSLPAG----EVGYPGG-IFNPLNFAPTL----EAKEKEIANGRLAMLAFLGFIIQHNVT 235

Query: 233 HTGPIDNLVEHLSNPWHKTIIQTLSSS 258
             GP DNL++H+S+PWH TI+QTL  +
Sbjct: 236 GKGPFDNLLQHISDPWHNTIVQTLGGN 252

[Close]

BLAST of CsaV3_2G027790 vs. ExPASy Swiss-Prot
Match: P27521 (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA4 PE=1 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 9.9e-53
Identity = 114/253 (45.06%), Postives = 159/253 (62.85%), Query Frame = 0


Query: 14  HPSSSSYTPLFNPSQFL-----RLRSPSRRTLLIAHAQSE------HRQTWLPGLDPPPH 73
           H S+S + P  +  +FL     RL      T + + A++        +  WLPGL  P +
Sbjct: 7   HASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDY 66

Query: 74  LDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISELPV 133
           L G+LAGD GFDPLGL EDP++LKW+VQAELV+ R+AMLGV+G+LL ++    GI  +P 
Sbjct: 67  LTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPE 126

Query: 134 WYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGLEP 193
           WY+AG  +Y FA+  TLF+++ +L  +VE +R+ D K+PGS  Q+  F   + +    E 
Sbjct: 127 WYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF--KQYSLPKGEV 186

Query: 194 GYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVEHL 253
           GYPGG + NPL  A       + K KE+ NGRLAM+A LG  VQ  VT  GP +NL++HL
Sbjct: 187 GYPGG-IFNPLNFAP----TQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHL 246

Query: 254 SNPWHKTIIQTLS 256
           S+PWH TI+QT +
Sbjct: 247 SDPWHNTIVQTFN 251

[Close]

BLAST of CsaV3_2G027790 vs. ExPASy Swiss-Prot
Match: P10708 (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB7 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 3.2e-51
Identity = 104/221 (47.06%), Postives = 132/221 (59.73%), Query Frame = 0


Query: 36  SRRTLLIAHAQSEHRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVH 95
           +R    +  A    R  W PG  PPP LDG+L GDFGFDPLGL  DP+SL+W  QAELVH
Sbjct: 51  ARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVH 110

Query: 96  CRFAMLGVSGVLLTDLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRY 155
           CR+AMLG +G+ + +LL   GI   P WY AG  EY F +  TLFIV+L+L+G+ E +R+
Sbjct: 111 CRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEY-FTDTTTLFIVELVLIGWAEGRRW 170

Query: 156 MDFKSPGSQAQEGTFFGLEAAFKGLEPGYPGGPLLNPLGIAK-DIKNAHDWKLKEIKNGR 215
            D   PG    +  F        G + GYPGG   +PLG          + + KEIKNGR
Sbjct: 171 ADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGR 230

Query: 216 LAMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLS 256
           LAM+A++G + Q   T TGPIDNL  HL++P H TI    S
Sbjct: 231 LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268

[Close]

BLAST of CsaV3_2G027790 vs. ExPASy Swiss-Prot
Match: Q9SYW8 (Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA2 PE=1 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 4.2e-51
Identity = 103/209 (49.28%), Postives = 129/209 (61.72%), Query Frame = 0


Query: 43  AHAQSEHRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLG 102
           A A    R  W PG  PP  LDG+L GDFGFDPLGL  DP SLKW VQAE+VHCR+AMLG
Sbjct: 45  AVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLG 104

Query: 103 VSGVLLTDLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPG 162
            +G+ + + L   GI   P WY AG  EY F +K TLF+V+L+L+G+ E +R+ D   PG
Sbjct: 105 AAGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADIIKPG 164

Query: 163 SQAQEGTFFGLEAAFKGLEPGYPGGPLLNPLGIAK-DIKNAHDWKLKEIKNGRLAMVAML 222
           S   +  F        G + GYPGG   +PLG          + + KEIKNGRLAM+A++
Sbjct: 165 SVNTDPVF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVM 224

Query: 223 GIFVQAYVTHTGPIDNLVEHLSNPWHKTI 251
           G + Q   T TGPIDNL  HL++P H TI
Sbjct: 225 GAWFQHIYTGTGPIDNLFAHLADPGHATI 250

[Close]

BLAST of CsaV3_2G027790 vs. ExPASy TrEMBL
Match: A0A0A0LRB4 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_2G357290 PE=3 SV=1)

HSP 1 Score: 534.6 bits (1376), Expect = 2.2e-148
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0


Query: 1   MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPP 60
           MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPP
Sbjct: 1   MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPP 60

Query: 61  PHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISEL 120
           PHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISEL
Sbjct: 61  PHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISEL 120

Query: 121 PVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGL 180
           PVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGL
Sbjct: 121 PVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGL 180

Query: 181 EPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVE 240
           EPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVE
Sbjct: 181 EPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVE 240

Query: 241 HLSNPWHKTIIQTLSSSSP 260
           HLSNPWHKTIIQTLSSSSP
Sbjct: 241 HLSNPWHKTIIQTLSSSSP 259

[Close]

BLAST of CsaV3_2G027790 vs. ExPASy TrEMBL
Match: A0A5A7UY53 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00360 PE=3 SV=1)

HSP 1 Score: 506.9 bits (1304), Expect = 5.0e-140
Identity = 245/260 (94.23%), Postives = 253/260 (97.31%), Query Frame = 0


Query: 1   MAVSFSAATALHLHPSSSSYTPLFNP-SQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDP 60
           MAVS SAAT  HLHPSSSS+TPLFNP +QF+RLRSPSR +LLIAHAQSEHRQTWLPGLDP
Sbjct: 1   MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLIAHAQSEHRQTWLPGLDP 60

Query: 61  PPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISE 120
           PP+LDGTL GDFGFDPLGLGEDP SLKWYVQAELVHCRFAMLGV+GVLLTDLLRVTGISE
Sbjct: 61  PPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVTGISE 120

Query: 121 LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKG 180
           LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAF+G
Sbjct: 121 LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFEG 180

Query: 181 LEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV 240
           LEPGYPGGPLLNPLGIAKD+KNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV
Sbjct: 181 LEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV 240

Query: 241 EHLSNPWHKTIIQTLSSSSP 260
           EHLSNPWHKTIIQTLSSSSP
Sbjct: 241 EHLSNPWHKTIIQTLSSSSP 260

[Close]

BLAST of CsaV3_2G027790 vs. ExPASy TrEMBL
Match: A0A1S3BBL1 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487892 PE=3 SV=1)

HSP 1 Score: 506.9 bits (1304), Expect = 5.0e-140
Identity = 245/260 (94.23%), Postives = 253/260 (97.31%), Query Frame = 0


Query: 1   MAVSFSAATALHLHPSSSSYTPLFNP-SQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDP 60
           MAVS SAAT  HLHPSSSS+TPLFNP +QF+RLRSPSR +LLIAHAQSEHRQTWLPGLDP
Sbjct: 1   MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLIAHAQSEHRQTWLPGLDP 60

Query: 61  PPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISE 120
           PP+LDGTL GDFGFDPLGLGEDP SLKWYVQAELVHCRFAMLGV+GVLLTDLLRVTGISE
Sbjct: 61  PPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVTGISE 120

Query: 121 LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKG 180
           LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAF+G
Sbjct: 121 LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFEG 180

Query: 181 LEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV 240
           LEPGYPGGPLLNPLGIAKD+KNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV
Sbjct: 181 LEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV 240

Query: 241 EHLSNPWHKTIIQTLSSSSP 260
           EHLSNPWHKTIIQTLSSSSP
Sbjct: 241 EHLSNPWHKTIIQTLSSSSP 260

[Close]

BLAST of CsaV3_2G027790 vs. ExPASy TrEMBL
Match: A0A6J1KNS0 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111495909 PE=3 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 5.9e-125
Identity = 226/260 (86.92%), Postives = 237/260 (91.15%), Query Frame = 0


Query: 1   MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLI-AHAQSEHRQTWLPGLDP 60
           MAVS SAAT  HL PSSS Y+   +  Q L LRSPSRRT+   A +QS+ RQTWLPGLDP
Sbjct: 1   MAVSLSAATPFHLLPSSSLYSSSLSSKQHL-LRSPSRRTVTAQAQSQSQPRQTWLPGLDP 60

Query: 61  PPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISE 120
           PPHLDGTLAGDFGFDPLGLGEDP SLKW+VQAELVH RFAMLGVSG+LLTDLLRVTGISE
Sbjct: 61  PPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGISE 120

Query: 121 LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKG 180
           LPVWYNAGAVEYGFANK TLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLE+AF+G
Sbjct: 121 LPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESAFEG 180

Query: 181 LEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV 240
           LEPGYPGGPLLNPLG+AKDIKNAH+WKLKEIKNGRLAMVAMLGIFVQAYVT TGPIDNLV
Sbjct: 181 LEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLV 240

Query: 241 EHLSNPWHKTIIQTLSSSSP 260
           EHLSNPWH TII TLSSSSP
Sbjct: 241 EHLSNPWHNTIIHTLSSSSP 259

[Close]

BLAST of CsaV3_2G027790 vs. ExPASy TrEMBL
Match: A0A6J1GH16 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111454144 PE=3 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 1.0e-124
Identity = 224/257 (87.16%), Postives = 236/257 (91.83%), Query Frame = 0


Query: 1   MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLI-AHAQSEHRQTWLPGLDP 60
           MAVS SAAT+ HL PSSS Y+   +P Q L LRSPSRRT+   A +QS+ RQTWLPGLDP
Sbjct: 1   MAVSLSAATSFHLLPSSSFYSSSLSPKQHL-LRSPSRRTVTAQAQSQSQPRQTWLPGLDP 60

Query: 61  PPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISE 120
           PPHLDGTLAGDFGFDPLGLGEDP SLKW+VQAELVH RFAMLGVSG+LLTDLLRVTGISE
Sbjct: 61  PPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGISE 120

Query: 121 LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKG 180
           LPVWYNAGAVEYGFANK TLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLE+AF+G
Sbjct: 121 LPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESAFEG 180

Query: 181 LEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV 240
           LEPGYPGGPLLNPLG+AKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVT TGPIDNLV
Sbjct: 181 LEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLV 240

Query: 241 EHLSNPWHKTIIQTLSS 257
           EHLSNPWH T+I TLSS
Sbjct: 241 EHLSNPWHNTVIHTLSS 256

[Close]

BLAST of CsaV3_2G027790 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 370.2 bits (949), Expect = 1.4e-102
Identity = 171/210 (81.43%), Postives = 191/210 (90.95%), Query Frame = 0


Query: 50  RQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLT 109
           R TWLPGL+PPP+LDG LAGD+GFDPLGLGEDP+SLKWYVQAELVH RFAMLGV+G+L T
Sbjct: 46  RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFT 105

Query: 110 DLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGT 169
           DLLR TGI  LPVWY AGAV++ FA+ +TL +VQ LLMGF ETKRYMDF SPGSQA+EG+
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGS 165

Query: 170 -FFGLEAAFKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAY 229
            FFGLEAA +GLEPGYPGGPLLNPLG+AKD++NAHDWKLKEIKNGRLAM+AMLG FVQA 
Sbjct: 166 FFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQAS 225

Query: 230 VTHTGPIDNLVEHLSNPWHKTIIQTLSSSS 259
           VTHTGPIDNLVEHLSNPWHKTIIQTL +S+
Sbjct: 226 VTHTGPIDNLVEHLSNPWHKTIIQTLFTST 255

[Close]

BLAST of CsaV3_2G027790 vs. TAIR 10
Match: AT1G45474.2 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 370.2 bits (949), Expect = 1.4e-102
Identity = 171/210 (81.43%), Postives = 191/210 (90.95%), Query Frame = 0


Query: 50  RQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLT 109
           R TWLPGL+PPP+LDG LAGD+GFDPLGLGEDP+SLKWYVQAELVH RFAMLGV+G+L T
Sbjct: 46  RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFT 105

Query: 110 DLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGT 169
           DLLR TGI  LPVWY AGAV++ FA+ +TL +VQ LLMGF ETKRYMDF SPGSQA+EG+
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGS 165

Query: 170 -FFGLEAAFKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAY 229
            FFGLEAA +GLEPGYPGGPLLNPLG+AKD++NAHDWKLKEIKNGRLAM+AMLG FVQA 
Sbjct: 166 FFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQAS 225

Query: 230 VTHTGPIDNLVEHLSNPWHKTIIQTLSSSS 259
           VTHTGPIDNLVEHLSNPWHKTIIQTL +S+
Sbjct: 226 VTHTGPIDNLVEHLSNPWHKTIIQTLFTST 255

[Close]

BLAST of CsaV3_2G027790 vs. TAIR 10
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4 )

HSP 1 Score: 208.4 bits (529), Expect = 7.0e-54
Identity = 114/253 (45.06%), Postives = 159/253 (62.85%), Query Frame = 0


Query: 14  HPSSSSYTPLFNPSQFL-----RLRSPSRRTLLIAHAQSE------HRQTWLPGLDPPPH 73
           H S+S + P  +  +FL     RL      T + + A++        +  WLPGL  P +
Sbjct: 7   HASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDY 66

Query: 74  LDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISELPV 133
           L G+LAGD GFDPLGL EDP++LKW+VQAELV+ R+AMLGV+G+LL ++    GI  +P 
Sbjct: 67  LTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPE 126

Query: 134 WYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGLEP 193
           WY+AG  +Y FA+  TLF+++ +L  +VE +R+ D K+PGS  Q+  F   + +    E 
Sbjct: 127 WYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF--KQYSLPKGEV 186

Query: 194 GYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVEHL 253
           GYPGG + NPL  A       + K KE+ NGRLAM+A LG  VQ  VT  GP +NL++HL
Sbjct: 187 GYPGG-IFNPLNFAP----TQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHL 246

Query: 254 SNPWHKTIIQTLS 256
           S+PWH TI+QT +
Sbjct: 247 SDPWHNTIVQTFN 251

[Close]

BLAST of CsaV3_2G027790 vs. TAIR 10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2 )

HSP 1 Score: 203.0 bits (515), Expect = 3.0e-52
Identity = 103/209 (49.28%), Postives = 129/209 (61.72%), Query Frame = 0


Query: 43  AHAQSEHRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLG 102
           A A    R  W PG  PP  LDG+L GDFGFDPLGL  DP SLKW VQAE+VHCR+AMLG
Sbjct: 45  AVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLG 104

Query: 103 VSGVLLTDLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPG 162
            +G+ + + L   GI   P WY AG  EY F +K TLF+V+L+L+G+ E +R+ D   PG
Sbjct: 105 AAGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADIIKPG 164

Query: 163 SQAQEGTFFGLEAAFKGLEPGYPGGPLLNPLGIAK-DIKNAHDWKLKEIKNGRLAMVAML 222
           S   +  F        G + GYPGG   +PLG          + + KEIKNGRLAM+A++
Sbjct: 165 SVNTDPVF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVM 224

Query: 223 GIFVQAYVTHTGPIDNLVEHLSNPWHKTI 251
           G + Q   T TGPIDNL  HL++P H TI
Sbjct: 225 GAWFQHIYTGTGPIDNLFAHLADPGHATI 250

[Close]

BLAST of CsaV3_2G027790 vs. TAIR 10
Match: AT1G61520.1 (photosystem I light harvesting complex gene 3 )

HSP 1 Score: 176.4 bits (446), Expect = 3.0e-44
Identity = 91/225 (40.44%), Postives = 133/225 (59.11%), Query Frame = 0


Query: 46  QSEHRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSL------KWYVQAELVHCRFA 105
           Q  +R  W        +LDG+L GD+GFDPLGL  DP+        +W    E+++ RFA
Sbjct: 49  QGANRPLWFASSQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGRFA 108

Query: 106 MLGVSGVLLTDLLRVTGI----SELPVWYNAGAVEYG-----FANKRTLFIVQLLLMGFV 165
           MLG +G +  ++L   G+    + LP W+  G +        +A+  TLF++++ LMGF 
Sbjct: 109 MLGAAGAIAPEILGKAGLIPAETALP-WFQTGVIPPAGTYTYWADNYTLFVLEMALMGFA 168

Query: 166 ETKRYMDFKSPGSQAQEGTFFGLEAAFKGL-EPGYPGGPLLNPLGIAKDIKNAHDWKLKE 225
           E +R  D+ +PGS  ++  F GLE    G   P YPGGP  NPLG  KD K+  + KLKE
Sbjct: 169 EHRRLQDWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKE 228

Query: 226 IKNGRLAMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTL 255
           +KNGRLAM+A+LG F+Q  VT  GP  NL++HL++P +  ++ +L
Sbjct: 229 VKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270

The following BLAST results are available for this feature:

BLAST of CsaV3_2G027790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150882.1	4.6e-148	100.00	photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucumis sativus]...	[more]
XP_008444623.1	1.0e-139	94.23	PREDICTED: photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucum...	[more]
XP_038886221.1	1.3e-134	92.75	photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Benincasa hispid...	[more]
XP_023001834.1	1.2e-124	86.92	photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita maxima...	[more]
XP_022951251.1	2.1e-124	87.16	photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita moscha...	[more]

BLAST of CsaV3_2G027790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C639	2.0e-101	81.43	Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis th...	[more]
Q9SQL2	4.4e-53	51.21	Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lh...	[more]
P27521	9.9e-53	45.06	Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
P10708	3.2e-51	47.06	Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081...	[more]
Q9SYW8	4.2e-51	49.28	Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis th...	[more]

BLAST of CsaV3_2G027790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRB4	2.2e-148	100.00	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A5A7UY53	5.0e-140	94.23	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BBL1	5.0e-140	94.23	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1KNS0	5.9e-125	86.92	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1GH16	1.0e-124	87.16	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of CsaV3_2G027790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G45474.1	1.4e-102	81.43	photosystem I light harvesting complex gene 5	[more]
AT1G45474.2	1.4e-102	81.43	photosystem I light harvesting complex gene 5	[more]
AT3G47470.1	7.0e-54	45.06	light-harvesting chlorophyll-protein complex I subunit A4	[more]
AT3G61470.1	3.0e-52	49.28	photosystem I light harvesting complex gene 2	[more]
AT1G61520.1	3.0e-44	40.44	photosystem I light harvesting complex gene 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 59..228 e-value: 5.9E-48 score: 163.4
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 50..258 e-value: 1.8E-61 score: 209.5
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 43..256
None	No IPR available	PANTHER	PTHR21649:SF67	PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 5, CHLOROPLASTIC	coord: 43..256
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 47..256

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G027790.1	CsaV3_2G027790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0016020	membrane