CsaV3_2G026740 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G026740
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2: 18341566 .. 18342950 (+)
RNA-Seq ExpressionCsaV3_2G026740
SyntenyCsaV3_2G026740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCCATCAACATTACCATTGAACCGTGAATTGACATTCGTCGTGCCTATGGAAGATTGGTCTACTGCACAAGTTAACTTTGATGGAAAAGTTTTCTCCATTGAGTCACAACTGTTTATCGATATTATCCAACTATTTTCTTCCTTCACTGAAGCTAATACAAGTAATGCAATTCTATTTTCCGTATATTTTACTTTTTTTTCTTTTAAATAAATAGTGGTTTATAATAATTTATATATTATATATATATATATATATATATATCGCTAAAACCTTTTTTTATTTTGTACAGTTTTGATTGCTTCATTTGGTTCAAAAGTCTCCTTCTCAATTCTTCCATTTGCAGAGACACCTCTTACCGAAGAGGTATGTTCTATGAACTTTTCTTCAAGACGGCTGTTTTAATTTTCTTTGATATATTTGTGTATTTTTGTAGATAAGATGAAAATTTGTTAAATATATAATCCCCAATTAACACAAAACCCTAATTGATATGAGTTATAGTAAATGTAATGTTATATGAATATTCTGTCACTTCTAATGTTCCTTGTGTATTTGAAAATTTGTTGAAGGCCAACAAGTAGAATTACTTGGTTAACGTTGAAAATCTGTTAATATATAGTCATTAATTAACACAAAAGTCTAAGTTGATATGAGTTGGGGTAAATGTAATCTTATATTTTATGTAGAATTATATCGATCAATATTAAAAAGAATAACAACCTTTTGGTTCTTCATTCACTATGTAATTTTTTTCTTCTTGTTAAATATGTTTTATTGATTTCAATTCAGTGTTAAAGTTTCAGAATGTGAACCAAGTTTCATAATTATTACAAATCTTGAAATCTAGGAACCAAATTGAACAAAAATTCAAATTAATCTAAAGGGTTAGCATTCAAAATGTGTTAATTAATCATTCATTAACAAACAATAAAAAAGAACATAGACAAAAAAAAAGGGGTTATGAACGGTAGTGACTTTTATGAAAACACTTTTAGTTGAAATTATTGGATGAGTAAAGAAATTTGTTTGACAAAATGAATATTGTGCAGAGTGGAACATGTTTGATTTTTGGTGATAGAGAAATCGAAACTCAAATACAAATGCCACTTCTTCCATCCTCATTTTTCAGTAATTGTGTACTTCAATCTCAAAGGGTATGGTTCTTCCAATCACCTGATTCTTCTTGTACATTCATTCATTTCCCTTTTCAAGTTTATCCTCATTTTTTGGTGATCTGTATCCCTTTCCAAATTGTGTAATTAACTCTTCATCTCAACATTAAGAACACACACTCACTAAACAAAATTGAAGTCTGATTACTTGGGATTTTCTGTATAGTACTATCAATACAACTAATTTTCCTCCCAATGTTTTGAACTTTTC

mRNA sequence

CCATCAACATTACCATTGAACCGTGAATTGACATTCGTCGTGCCTATGGAAGATTGGTCTACTGCACAAGTTAACTTTGATGGAAAAGTTTTCTCCATTGAGTCACAACTGTTTATCGATATTATCCAACTATTTTCTTCCTTCACTGAAGCTAATACAATTTTGATTGCTTCATTTGGTTCAAAAGTCTCCTTCTCAATTCTTCCATTTGCAGAGACACCTCTTACCGAAGAGAGTGGAACATGTTTGATTTTTGGTGATAGAGAAATCGAAACTCAAATACAAATGCCACTTCTTCCATCCTCATTTTTCAGTAATTGTGTACTTCAATCTCAAAGGGTATGGTTCTTCCAATCACCTGATTCTTCTTGTACATTCATTCATTTCCCTTTTCAAGTTTATCCTCATTTTTTGGTGATCTGTATCCCTTTCCAAATTGTGTAA

Coding sequence (CDS)

CCATCAACATTACCATTGAACCGTGAATTGACATTCGTCGTGCCTATGGAAGATTGGTCTACTGCACAAGTTAACTTTGATGGAAAAGTTTTCTCCATTGAGTCACAACTGTTTATCGATATTATCCAACTATTTTCTTCCTTCACTGAAGCTAATACAATTTTGATTGCTTCATTTGGTTCAAAAGTCTCCTTCTCAATTCTTCCATTTGCAGAGACACCTCTTACCGAAGAGAGTGGAACATGTTTGATTTTTGGTGATAGAGAAATCGAAACTCAAATACAAATGCCACTTCTTCCATCCTCATTTTTCAGTAATTGTGTACTTCAATCTCAAAGGGTATGGTTCTTCCAATCACCTGATTCTTCTTGTACATTCATTCATTTCCCTTTTCAAGTTTATCCTCATTTTTTGGTGATCTGTATCCCTTTCCAAATTGTGTAA

Protein sequence

PSTLPLNRELTFVVPMEDWSTAQVNFDGKVFSIESQLFIDIIQLFSSFTEANTILIASFGSKVSFSILPFAETPLTEESGTCLIFGDREIETQIQMPLLPSSFFSNCVLQSQRVWFFQSPDSSCTFIHFPFQVYPHFLVICIPFQIV*
Homology
[Close]
BLAST of CsaV3_2G026740 vs. NCBI nr
Match: KAE8652085.1 (hypothetical protein Csa_018729, partial [Cucumis sativus])

HSP 1 Score: 295.8 bits (756), Expect = 2.0e-76
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0 

Query: 1   PSTLPLNRELTFVVPMEDWSTAQVNFDGKVFSIESQLFIDIIQLFSSFTEANTILIASFG 60
           PSTLPLNRELTFVVPMEDWSTAQVNFDGKVFSIESQLFIDIIQLFSSFTEANTILIASFG
Sbjct: 1   PSTLPLNRELTFVVPMEDWSTAQVNFDGKVFSIESQLFIDIIQLFSSFTEANTILIASFG 60

Query: 61  SKVSFSILPFAETPLTEESGTCLIFGDREIETQIQMPLLPSSFFSNCVLQSQRVWFFQSP 120
           SKVSFSILPFAETPLTEESGTCLIFGDREIETQIQMPLLPSSFFSNCVLQSQRVWFFQSP
Sbjct: 61  SKVSFSILPFAETPLTEESGTCLIFGDREIETQIQMPLLPSSFFSNCVLQSQRVWFFQSP 120

Query: 121 DSSCTFIHFPFQVYPHFLVICIPFQIV 148
           DSSCTFIHFPFQVYPHFLVICIPFQIV
Sbjct: 121 DSSCTFIHFPFQVYPHFLVICIPFQIV 147

[Close]
BLAST of CsaV3_2G026740 vs. NCBI nr
Match: XP_031736681.1 (uncharacterized protein LOC116402062 [Cucumis sativus] >XP_031741497.1 uncharacterized protein LOC116403863 [Cucumis sativus])

HSP 1 Score: 295.8 bits (756), Expect = 2.0e-76
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0 

Query: 1   PSTLPLNRELTFVVPMEDWSTAQVNFDGKVFSIESQLFIDIIQLFSSFTEANTILIASFG 60
           PSTLPLNRELTFVVPMEDWSTAQVNFDGKVFSIESQLFIDIIQLFSSFTEANTILIASFG
Sbjct: 109 PSTLPLNRELTFVVPMEDWSTAQVNFDGKVFSIESQLFIDIIQLFSSFTEANTILIASFG 168

Query: 61  SKVSFSILPFAETPLTEESGTCLIFGDREIETQIQMPLLPSSFFSNCVLQSQRVWFFQSP 120
           SKVSFSILPFAETPLTEESGTCLIFGDREIETQIQMPLLPSSFFSNCVLQSQRVWFFQSP
Sbjct: 169 SKVSFSILPFAETPLTEESGTCLIFGDREIETQIQMPLLPSSFFSNCVLQSQRVWFFQSP 228

Query: 121 DSSCTFIHFPFQVYPHFLVICIPFQIV 148
           DSSCTFIHFPFQVYPHFLVICIPFQIV
Sbjct: 229 DSSCTFIHFPFQVYPHFLVICIPFQIV 255

[Close]
BLAST of CsaV3_2G026740 vs. NCBI nr
Match: KAA0047513.1 (hypothetical protein E6C27_scaffold498G001420 [Cucumis melo var. makuwa])

HSP 1 Score: 126.7 bits (317), Expect = 1.6e-25
Identity = 62/78 (79.49%), Postives = 69/78 (88.46%), Query Frame = 0 

Query: 1   PSTLPLNRELTFVVPMEDWSTAQVNFDGKVFSIESQLFIDIIQLFSSFTEANTILIASFG 60
           PSTLPLNRELTFVVPMEDWS   V FDGK+FSIES+LF DIIQLFS+F EA+ ILI +FG
Sbjct: 60  PSTLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAILITAFG 119

Query: 61  SKVSFSILPFAETPLTEE 79
           SKV+FS+ PFAETPLTEE
Sbjct: 120 SKVTFSVPPFAETPLTEE 137

[Close]
BLAST of CsaV3_2G026740 vs. NCBI nr
Match: TYK26483.1 (hypothetical protein E5676_scaffold313G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 126.7 bits (317), Expect = 1.6e-25
Identity = 62/78 (79.49%), Postives = 69/78 (88.46%), Query Frame = 0 

Query: 1   PSTLPLNRELTFVVPMEDWSTAQVNFDGKVFSIESQLFIDIIQLFSSFTEANTILIASFG 60
           PSTLPLNRELTFVVPMEDWS   V FDGK+FSIES+LF DIIQLFS+F EA+ ILI +FG
Sbjct: 60  PSTLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAILITAFG 119

Query: 61  SKVSFSILPFAETPLTEE 79
           SKV+FS+ PFAETPLTEE
Sbjct: 120 SKVTFSVPPFAETPLTEE 137

[Close]
BLAST of CsaV3_2G026740 vs. NCBI nr
Match: KGN45637.1 (hypothetical protein Csa_005027 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-05
Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 0 

Query: 2   STLPLNRELTFVVPMEDWSTAQVNFDGKVFSIESQLFIDIIQLFSSFTEANT 54
           S +P+ R++ F VPMEDWS  +++FD K FSIES LF DII  F  + E +T
Sbjct: 110 SPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDT 161

[Close]
BLAST of CsaV3_2G026740 vs. ExPASy TrEMBL
Match: A0A5A7TVD7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001420 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 8.0e-26
Identity = 62/78 (79.49%), Postives = 69/78 (88.46%), Query Frame = 0 

Query: 1   PSTLPLNRELTFVVPMEDWSTAQVNFDGKVFSIESQLFIDIIQLFSSFTEANTILIASFG 60
           PSTLPLNRELTFVVPMEDWS   V FDGK+FSIES+LF DIIQLFS+F EA+ ILI +FG
Sbjct: 60  PSTLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAILITAFG 119

Query: 61  SKVSFSILPFAETPLTEE 79
           SKV+FS+ PFAETPLTEE
Sbjct: 120 SKVTFSVPPFAETPLTEE 137

[Close]
BLAST of CsaV3_2G026740 vs. ExPASy TrEMBL
Match: A0A5D3DSC2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00490 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 8.0e-26
Identity = 62/78 (79.49%), Postives = 69/78 (88.46%), Query Frame = 0 

Query: 1   PSTLPLNRELTFVVPMEDWSTAQVNFDGKVFSIESQLFIDIIQLFSSFTEANTILIASFG 60
           PSTLPLNRELTFVVPMEDWS   V FDGK+FSIES+LF DIIQLFS+F EA+ ILI +FG
Sbjct: 60  PSTLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAILITAFG 119

Query: 61  SKVSFSILPFAETPLTEE 79
           SKV+FS+ PFAETPLTEE
Sbjct: 120 SKVTFSVPPFAETPLTEE 137

[Close]
BLAST of CsaV3_2G026740 vs. ExPASy TrEMBL
Match: A0A0A0KB76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002310 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.4e-06
Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 0 

Query: 2   STLPLNRELTFVVPMEDWSTAQVNFDGKVFSIESQLFIDIIQLFSSFTEANT 54
           S +P+ R++ F VPMEDWS  +++FD K FSIES LF DII  F  + E +T
Sbjct: 110 SPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDT 161

[Close]
BLAST of CsaV3_2G026740 vs. ExPASy TrEMBL
Match: A0A1S3CL88 (uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 6.6e-04
Identity = 46/144 (31.94%), Postives = 73/144 (50.69%), Query Frame = 0 

Query: 5   PLNRELTFVVPM-EDWSTAQVNFD-GKVFSIESQLFIDIIQLFSSFTEANTILIASFGSK 64
           PL+ ELT   P  ED    Q   D  K F ++S+    II+    F   + I +    S+
Sbjct: 113 PLHHELTLSPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDSIISVDVTNSR 172

Query: 65  VSFSILPFAETPLTEESGTCLIFG-DREIETQIQMPLLPSSFFSNCVLQSQRVWFFQSPD 124
           V FSI   ++  +  E   C I G + E+ETQ Q+ L P  FF N   ++ RVWF+++ +
Sbjct: 173 VKFSIA--SKEIILTEGRHCKIEGFEEEVETQFQIILCPMMFFLNFTYKANRVWFYKTKN 232

Query: 125 SSCTFIHFP-FQVYPHFLVICIPF 145
           ++ T +  P + ++  + VI  PF
Sbjct: 233 NAYTLMVVPAYGIFGQY-VIYFPF 253

The following BLAST results are available for this feature:
BLAST of CsaV3_2G026740 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8652085.12.0e-76100.00hypothetical protein Csa_018729, partial [Cucumis sativus][more]
XP_031736681.12.0e-76100.00uncharacterized protein LOC116402062 [Cucumis sativus] >XP_031741497.1 uncharact... [more]
KAA0047513.11.6e-2579.49hypothetical protein E6C27_scaffold498G001420 [Cucumis melo var. makuwa][more]
TYK26483.11.6e-2579.49hypothetical protein E5676_scaffold313G00490 [Cucumis melo var. makuwa][more]
KGN45637.11.1e-0551.92hypothetical protein Csa_005027 [Cucumis sativus][more]
BLAST of CsaV3_2G026740 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G026740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TVD78.0e-2679.49Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DSC28.0e-2679.49Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KB765.4e-0651.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002310 PE=4 SV=1[more]
A0A1S3CL886.6e-0431.94uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=... [more]
BLAST of CsaV3_2G026740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G026740.1CsaV3_2G026740.1mRNA