CsaV3_2G026580 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G026580
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2: 18172187 .. 18173311 (+)
RNA-Seq Expression	CsaV3_2G026580
Synteny	CsaV3_2G026580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCTACTTCTTCCCTGCAATAATTTCCAAAATCCACGTCACATGAGAAATTCTATTTCAAGTTTAGAACAGAAATTAAAGAAAAACTATCCCGACAATAGGCCAAAAGTAGAGATTTTGAAAGGCATAGATAGCTATTAAAGAAAAATGAGATCCTGCAAACCGTGGACACTACTATAAATCTTCGTTGAAAACAGATCTAAAATGACGAATGCCAAGAACGGTTGAAAAATAGCAAGATGGACAAGTATTTAGAGATCGTTTGCAACATAACATATGAACCTTTAATGATTCATCGAAGCCCAATTCGGCAGAACGCAAAATGATTAATAAGATAAGAAAATAAAAACGTATACAAACACATCATTTTAGTCTCCGAATCAAAGCATATAAACCAATGAGGAAATACATCCACAAGAATACAGATTCATAACTAGAAATTTGCTGATCCAGAGTGAAACAACAGGAGACAATCACTATGAGAAGAGGTTTGCTCATCCCTTAGAGTCCACATATTCAATCTATCATGACAATATAAGAGGTGAAAAAAAATACAACGCATGAAAACAGATCGAAAAGAATGTAAACATAACGAAACCGAACCGATACCAGAAAATTCACATAAAATAAAAACAAAAAATAAACTCGTAGTTAAGGTGAACAGTAAACAACAACAGGTAATATATTTCGGAAAAAACAGTATAACAACCATAAATAAATAAACTTGATTTACAGATCTCGATCTAGAAATTAATACGATAAGACCAAGGCACAAATCCGACAAACTGAAGTCCATGGAATCAAAAATTAATGGACTAGCGACGGATCAGATCCCAGAAAAGAGGAGAAGAAAGACGAATAAGGATCGGTTTTACGAAAGACGAACCGGTAAGAAGGTGAAGCTATGAAGAACTAACGGATCTGAGAATGAAATTGAGAGTGATCTGAGAGAGGAGTGGTGTATCTAAAAGAGAGAAAGAAGATTATACCTTAGGAGAAAACTGATGGCCGGGAGGGAATTTTGGAGGAGTCCGCCGCGGCTACAATGTCGCGTTGGAATAAGGCGAATATTTCAGGCGGGGAAAGGCTTTCGCGCTGCAATATAATGTCGGGATTAGGGGTCTAA

mRNA sequence

ATGGAATCAAAAATTAATGGACTAGCGACGGATCAGATCCCAGAAAAGAGGAGAAGAAAGACGAATAAGGATCGGTTTTACGAAAGACGAACCGGTAAGAAGGAGAAAACTGATGGCCGGGAGGGAATTTTGGAGGAGTCCGCCGCGGCTACAATGTCGCGTTGGAATAAGGCGAATATTTCAGGCGGGGAAAGGCTTTCGCGCTGCAATATAATGTCGGGATTAGGGGTCTAA

Coding sequence (CDS)

ATGGAATCAAAAATTAATGGACTAGCGACGGATCAGATCCCAGAAAAGAGGAGAAGAAAGACGAATAAGGATCGGTTTTACGAAAGACGAACCGGTAAGAAGGAGAAAACTGATGGCCGGGAGGGAATTTTGGAGGAGTCCGCCGCGGCTACAATGTCGCGTTGGAATAAGGCGAATATTTCAGGCGGGGAAAGGCTTTCGCGCTGCAATATAATGTCGGGATTAGGGGTCTAA

Protein sequence

MESKINGLATDQIPEKRRRKTNKDRFYERRTGKKEKTDGREGILEESAAATMSRWNKANISGGERLSRCNIMSGLGV*

Homology

[Close]

BLAST of CsaV3_2G026580 vs. NCBI nr
Match: KGN62493.1 (hypothetical protein Csa_018686 [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 4.3e-33
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MESKINGLATDQIPEKRRRKTNKDRFYERRTGKKEKTDGREGILEESAAATMSRWNKANI 60
          MESKINGLATDQIPEKRRRKTNKDRFYERRTGKKEKTDGREGILEESAAATMSRWNKANI
Sbjct: 1  MESKINGLATDQIPEKRRRKTNKDRFYERRTGKKEKTDGREGILEESAAATMSRWNKANI 60

Query: 61 SGGERLSRCNIMSGLGV 78
          SGGERLSRCNIMSGLGV
Sbjct: 61 SGGERLSRCNIMSGLGV 77

[Close]

BLAST of CsaV3_2G026580 vs. ExPASy TrEMBL
Match: A0A0A0LL84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G356670 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.1e-33
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MESKINGLATDQIPEKRRRKTNKDRFYERRTGKKEKTDGREGILEESAAATMSRWNKANI 60
          MESKINGLATDQIPEKRRRKTNKDRFYERRTGKKEKTDGREGILEESAAATMSRWNKANI
Sbjct: 1  MESKINGLATDQIPEKRRRKTNKDRFYERRTGKKEKTDGREGILEESAAATMSRWNKANI 60

Query: 61 SGGERLSRCNIMSGLGV 78
          SGGERLSRCNIMSGLGV
Sbjct: 61 SGGERLSRCNIMSGLGV 77

The following BLAST results are available for this feature:

BLAST of CsaV3_2G026580 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62493.1	4.3e-33	100.00	hypothetical protein Csa_018686 [Cucumis sativus]	[more]

BLAST of CsaV3_2G026580 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G026580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LL84	2.1e-33	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G356670 PE=4 SV=1	[more]

BLAST of CsaV3_2G026580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..40

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G026580.1	CsaV3_2G026580.1	mRNA