CsaV3_2G025070 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G025070
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2: 17293289 .. 17293717 (-)
RNA-Seq Expression	CsaV3_2G025070
Synteny	CsaV3_2G025070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACACCTTCACAATTCCTTAGCAGTTCTTCACATTCATTCAAAGAACTGCACGTTCCTTCAATAACCCAAAAACAAAAACAACATAAAACAAAACAAAACCCAAAAAAATGGCACGCCAATTTGTTGTCTTTGCTTTGGTCCTCTTCGCCGTCATCGGCTTCACCTGCGCAGCCACACCTGCCGAAGCTCCCAAGGGCTCTGCTGACACCGCTGGAGTTGGAGCTCAATTGGCTCCAGGAGCCGAAAACGAGATTGGAAACACCGAGGGGGCTGATGCACCCGCCGGCAGCGAGGATGTGGTTGAAGCCCCTGTGGGCGGACCTGGTGCTACAGCAGGTGGATTTGTCCCTGCTCCAGCTCCCAGTGCTGCCTCTGCCCTCGAATTCTCTGCCGCTGCTGCCGTTACCGCCGTTGCAGGATTTTTCTTCT

mRNA sequence

ACACCTTCACAATTCCTTAGCAGTTCTTCACATTCATTCAAAGAACTGCACGTTCCTTCAATAACCCAAAAACAAAAACAACATAAAACAAAACAAAACCCAAAAAAATGGCACGCCAATTTGTTGTCTTTGCTTTGGTCCTCTTCGCCGTCATCGGCTTCACCTGCGCAGCCACACCTGCCGAAGCTCCCAAGGGCTCTGCTGACACCGCTGGAGTTGGAGCTCAATTGGCTCCAGGAGCCGAAAACGAGATTGGAAACACCGAGGGGGCTGATGCACCCGCCGGCAGCGAGGATGTGGTTGAAGCCCCTGTGGGCGGACCTGGTGCTACAGCAGGTGGATTTGTCCCTGCTCCAGCTCCCAGTGCTGCCTCTGCCCTCGAATTCTCTGCCGCTGCTGCCGTTACCGCCGTTGCAGGATTTTTCTTCT

Coding sequence (CDS)

ACACCTTCACAATTCCTTAGCAGTTCTTCACATTCATTCAAAGAACTGCACGTTCCTTCAATAACCCAAAAACAAAAACAACATAAAACAAAACAAAACCCAAAAAAATGGCACGCCAATTTGTTGTCTTTGCTTTGGTCCTCTTCGCCGTCATCGGCTTCACCTGCGCAGCCACACCTGCCGAAGCTCCCAAGGGCTCTGCTGACACCGCTGGAGTTGGAGCTCAATTGGCTCCAGGAGCCGAAAACGAGATTGGAAACACCGAGGGGGCTGATGCACCCGCCGGCAGCGAGGATGTGGTTGAAGCCCCTGTGGGCGGACCTGGTGCTACAGCAGGTGGATTTGTCCCTGCTCCAGCTCCCAGTGCTGCCTCTGCCCTCGAATTCTCTGCCGCTGCTGCCGTTACCGCCGTTGCAGGATTTTTCTTCT

Protein sequence

TPSQFLSSSSHSFKELHVPSITQKQKQHKTKQNPKKWHANLLSLLWSSSPSSASPAQPHLPKLPRALLTPLELELNWLQEPKTRLETPRGLMHPPAARMWLKPLWADLVLQQVDLSLLQLPVLPLPSNSLPLLPLPPLQDFSS

Homology

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BLAST of CsaV3_2G025070 vs. NCBI nr
Match: KAE8652045.1 (hypothetical protein Csa_018687, partial [Cucumis sativus])

HSP 1 Score: 283.1 bits (723), Expect = 1.3e-72
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   TPSQFLSSSSHSFKELHVPSITQKQKQHKTKQNPKKWHANLLSLLWSSSPSSASPAQPHL 60
           TPSQFLSSSSHSFKELHVPSITQKQKQHKTKQNPKKWHANLLSLLWSSSPSSASPAQPHL
Sbjct: 1   TPSQFLSSSSHSFKELHVPSITQKQKQHKTKQNPKKWHANLLSLLWSSSPSSASPAQPHL 60

Query: 61  PKLPRALLTPLELELNWLQEPKTRLETPRGLMHPPAARMWLKPLWADLVLQQVDLSLLQL 120
           PKLPRALLTPLELELNWLQEPKTRLETPRGLMHPPAARMWLKPLWADLVLQQVDLSLLQL
Sbjct: 61  PKLPRALLTPLELELNWLQEPKTRLETPRGLMHPPAARMWLKPLWADLVLQQVDLSLLQL 120

Query: 121 PVLPLPSNSLPLLPLPPLQDFSS 144
           PVLPLPSNSLPLLPLPPLQDFSS
Sbjct: 121 PVLPLPSNSLPLLPLPPLQDFSS 143

The following BLAST results are available for this feature:

BLAST of CsaV3_2G025070 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652045.1	1.3e-72	100.00	hypothetical protein Csa_018687, partial [Cucumis sativus]	[more]

BLAST of CsaV3_2G025070 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G025070 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G025070 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G025070.1	CsaV3_2G025070.1	mRNA