CsaV3_2G024250 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G024250
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Sec-independent protein translocase protein TATC
Location	chr2: 16833514 .. 16834122 (+)
RNA-Seq Expression	CsaV3_2G024250
Synteny	CsaV3_2G024250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTAGTTTTTATTCCATTTTCTGCTGATCAATCTCGCGGTTTTAATCCTCAAAATTTCTCTCCGGCCAACGTTCACGGCGGTTTTCTTAACTTCCCTCTGCCGGGAATCTCATATAACAGTTGCCGTCAACACCAGCAGCCGCCACTTCTCCCTTTGCCCCGCCGTCCACTTCCCCCTTCGGAAATCGGGGCCACAGTGTCCTCCCGCCCAAAGTGTATGGAATTCAGAGACCAATCTCTTACCCCAAAGAAATCAAAACCAATAAAACGAAGTAGAGGTCCACCGGCGGCGAAATCGACGGTGGAATTAGTGATCGTTGATTCCACGAATCGATTGGGGCCGGAGCCGAGCCACGTTCCTAAAGATTTGTTGACACTTTTAGGATTACGGCCGTCGGTGCCGCTTTGCGAAAGTACCCGGAGTTGGGAGACGGCGGCGGAAATTGAGTTTTCGGGGTCGGCATACAGCCAATCGCCGCCACCGAGTAGCGTTCCGCTTCCGAAATTCTCTCTGAGACGGAAGGTGGTTGGTTGTAACGTGGAGGCCTCCGGAGTAGACGCCGGCGCCACAGACAATCTGAGGCGACTATTGCGCATCCGATGA

mRNA sequence

ATGGAGGTAGTTTTTATTCCATTTTCTGCTGATCAATCTCGCGGTTTTAATCCTCAAAATTTCTCTCCGGCCAACGTTCACGGCGGTTTTCTTAACTTCCCTCTGCCGGGAATCTCATATAACAGTTGCCGTCAACACCAGCAGCCGCCACTTCTCCCTTTGCCCCGCCGTCCACTTCCCCCTTCGGAAATCGGGGCCACAGTGTCCTCCCGCCCAAAGTGTATGGAATTCAGAGACCAATCTCTTACCCCAAAGAAATCAAAACCAATAAAACGAAGTAGAGGTCCACCGGCGGCGAAATCGACGGTGGAATTAGTGATCGTTGATTCCACGAATCGATTGGGGCCGGAGCCGAGCCACGTTCCTAAAGATTTGTTGACACTTTTAGGATTACGGCCGTCGGTGCCGCTTTGCGAAAGTACCCGGAGTTGGGAGACGGCGGCGGAAATTGAGTTTTCGGGGTCGGCATACAGCCAATCGCCGCCACCGAGTAGCGTTCCGCTTCCGAAATTCTCTCTGAGACGGAAGGTGGTTGGTTGTAACGTGGAGGCCTCCGGAGTAGACGCCGGCGCCACAGACAATCTGAGGCGACTATTGCGCATCCGATGA

Coding sequence (CDS)

ATGGAGGTAGTTTTTATTCCATTTTCTGCTGATCAATCTCGCGGTTTTAATCCTCAAAATTTCTCTCCGGCCAACGTTCACGGCGGTTTTCTTAACTTCCCTCTGCCGGGAATCTCATATAACAGTTGCCGTCAACACCAGCAGCCGCCACTTCTCCCTTTGCCCCGCCGTCCACTTCCCCCTTCGGAAATCGGGGCCACAGTGTCCTCCCGCCCAAAGTGTATGGAATTCAGAGACCAATCTCTTACCCCAAAGAAATCAAAACCAATAAAACGAAGTAGAGGTCCACCGGCGGCGAAATCGACGGTGGAATTAGTGATCGTTGATTCCACGAATCGATTGGGGCCGGAGCCGAGCCACGTTCCTAAAGATTTGTTGACACTTTTAGGATTACGGCCGTCGGTGCCGCTTTGCGAAAGTACCCGGAGTTGGGAGACGGCGGCGGAAATTGAGTTTTCGGGGTCGGCATACAGCCAATCGCCGCCACCGAGTAGCGTTCCGCTTCCGAAATTCTCTCTGAGACGGAAGGTGGTTGGTTGTAACGTGGAGGCCTCCGGAGTAGACGCCGGCGCCACAGACAATCTGAGGCGACTATTGCGCATCCGATGA

Protein sequence

MEVVFIPFSADQSRGFNPQNFSPANVHGGFLNFPLPGISYNSCRQHQQPPLLPLPRRPLPPSEIGATVSSRPKCMEFRDQSLTPKKSKPIKRSRGPPAAKSTVELVIVDSTNRLGPEPSHVPKDLLTLLGLRPSVPLCESTRSWETAAEIEFSGSAYSQSPPPSSVPLPKFSLRRKVVGCNVEASGVDAGATDNLRRLLRIR*

Homology

[Close]

BLAST of CsaV3_2G024250 vs. NCBI nr
Match: KGN62252.1 (hypothetical protein Csa_018627 [Cucumis sativus])

HSP 1 Score: 411.4 bits (1056), Expect = 4.6e-111
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MEVVFIPFSADQSRGFNPQNFSPANVHGGFLNFPLPGISYNSCRQHQQPPLLPLPRRPLP 60
           MEVVFIPFSADQSRGFNPQNFSPANVHGGFLNFPLPGISYNSCRQHQQPPLLPLPRRPLP
Sbjct: 1   MEVVFIPFSADQSRGFNPQNFSPANVHGGFLNFPLPGISYNSCRQHQQPPLLPLPRRPLP 60

Query: 61  PSEIGATVSSRPKCMEFRDQSLTPKKSKPIKRSRGPPAAKSTVELVIVDSTNRLGPEPSH 120
           PSEIGATVSSRPKCMEFRDQSLTPKKSKPIKRSRGPPAAKSTVELVIVDSTNRLGPEPSH
Sbjct: 61  PSEIGATVSSRPKCMEFRDQSLTPKKSKPIKRSRGPPAAKSTVELVIVDSTNRLGPEPSH 120

Query: 121 VPKDLLTLLGLRPSVPLCESTRSWETAAEIEFSGSAYSQSPPPSSVPLPKFSLRRKVVGC 180
           VPKDLLTLLGLRPSVPLCESTRSWETAAEIEFSGSAYSQSPPPSSVPLPKFSLRRKVVGC
Sbjct: 121 VPKDLLTLLGLRPSVPLCESTRSWETAAEIEFSGSAYSQSPPPSSVPLPKFSLRRKVVGC 180

Query: 181 NVEASGVDAGATDNLRRLLRIR 203
           NVEASGVDAGATDNLRRLLRIR
Sbjct: 181 NVEASGVDAGATDNLRRLLRIR 202

[Close]

BLAST of CsaV3_2G024250 vs. NCBI nr
Match: KAA0064835.1 (sec-independent protein translocase protein TATC [Cucumis melo var. makuwa])

HSP 1 Score: 348.2 bits (892), Expect = 4.8e-92
Identity = 171/202 (84.65%), Postives = 179/202 (88.61%), Query Frame = 0


Query: 1   MEVVFIPFSADQSRGFNPQNFSPANVHGGFLNFPLPGISYNSCRQHQQPPLLPLPRRPLP 60
           MEVV IPFSADQSR FNPQN SPA VH G LNFPL GI YN  R HQQPPLLPLPRRPLP
Sbjct: 1   MEVVLIPFSADQSRSFNPQNLSPATVHAGLLNFPLRGIPYNGRRHHQQPPLLPLPRRPLP 60

Query: 61  PSEIGATVSSRPKCMEFRDQSLTPKKSKPIKRSRGPPAAKSTVELVIVDSTNRLGPEPSH 120
           PSE GAT   R KC++FRDQSL PKKSKPIKRSRGPPAAKSTVELVI+DSTNRLGPEP H
Sbjct: 61  PSETGATSFFRQKCVKFRDQSLNPKKSKPIKRSRGPPAAKSTVELVIIDSTNRLGPEPCH 120

Query: 121 VPKDLLTLLGLRPSVPLCESTRSWETAAEIEFSGSAYSQSPPPSSVPLPKFSLRRKVVGC 180
           VPKDL  +LGLRPS P+C+STRSWETAAEIEFSGSA SQSPPPSSVPLPKFSLRRKVVGC
Sbjct: 121 VPKDLWRVLGLRPSAPMCKSTRSWETAAEIEFSGSACSQSPPPSSVPLPKFSLRRKVVGC 180

Query: 181 NVEASGVDAGATDNLRRLLRIR 203
           NVE +GVDAGATDNLRRLLR+R
Sbjct: 181 NVEGAGVDAGATDNLRRLLRLR 202

[Close]

BLAST of CsaV3_2G024250 vs. NCBI nr
Match: XP_038884839.1 (uncharacterized protein LOC120075485 [Benincasa hispida])

HSP 1 Score: 305.4 bits (781), Expect = 3.5e-79
Identity = 156/203 (76.85%), Postives = 169/203 (83.25%), Query Frame = 0


Query: 1   MEVVFIPFSADQSRGFNPQNFSPANVHGGFLNFPLPGISYNSCRQHQQPPLLPLPRRPLP 60
           ME V +PFS  +SR FNPQNFSPA VHGG  NFP P ++Y S R HQQPPLLPLPRRP P
Sbjct: 1   MEAVLVPFS--ESRSFNPQNFSPATVHGGLFNFPPPAVTYFSHRHHQQPPLLPLPRRPFP 60

Query: 61  PSEIGATVSSRPKCMEFRDQSLTPKKSKPIKRSR-GPPAAKSTVELVIVDSTNRLGPEPS 120
           P E GAT   RPKC + RDQSLTPKKSKPIKRS+ GPPA KSTVE VIVDSTNRLGPEPS
Sbjct: 61  PPETGATAFCRPKC-KSRDQSLTPKKSKPIKRSKGGPPAVKSTVEFVIVDSTNRLGPEPS 120

Query: 121 HVPKDLLTLLGLRPSVPLCESTRSWETAAEIEFSGSAYSQSPPPSSVPLPKFSLRRKVVG 180
           HVPKDL  +LGL+ S P CE +RS  TAAE+EFSGSA+S SPPPSSVPLPKFSLRRKVV 
Sbjct: 121 HVPKDLWKVLGLQSSAPPCEGSRSLGTAAEMEFSGSAFSVSPPPSSVPLPKFSLRRKVVS 180

Query: 181 CNVEASGVDAGATDNLRRLLRIR 203
           CNVEA+GVDAGATDNLRRLLR+R
Sbjct: 181 CNVEAAGVDAGATDNLRRLLRLR 200

[Close]

BLAST of CsaV3_2G024250 vs. NCBI nr
Match: XP_023546813.1 (proline-rich receptor-like protein kinase PERK2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 272.3 bits (695), Expect = 3.3e-69
Identity = 142/202 (70.30%), Postives = 156/202 (77.23%), Query Frame = 0


Query: 1   MEVVFIPFSADQSRGFNPQNFSPANVHGGFLNFPLPGISYNSCRQHQQPPLLPLPRRPLP 60
           ME V IPFSA++SR     NFSPA VH G LN P P +   S R HQQPPLLPLPRRP P
Sbjct: 1   MEAVLIPFSAERSRSLKSCNFSPATVHDGLLNVPPPAVPNYSHRHHQQPPLLPLPRRPFP 60

Query: 61  PSEIGATVSSRPKCMEFRDQSLTPKKSKPIKRSRGPPAAKSTVELVIVDSTNRLGPEPSH 120
           P+ +GA  S RPK  + RDQSLTPKKSKPIKRSRGPPA KST E +IVDSTNRLGPEPSH
Sbjct: 61  PTAVGAPPSCRPKGTKSRDQSLTPKKSKPIKRSRGPPALKSTAEFMIVDSTNRLGPEPSH 120

Query: 121 VPKDLLTLLGLRPSVPLCESTRSWETAAEIEFSGSAYSQSPPPSSVPLPKFSLRRKVVGC 180
           VPKDL  +LGLR S P  E  RS+ET    EFSGS +  SPPPSSVPLPKF+LRR+ V C
Sbjct: 121 VPKDLWRVLGLRSSAPPREGGRSFET----EFSGSGFGVSPPPSSVPLPKFNLRRE-VSC 180

Query: 181 NVEASGVDAGATDNLRRLLRIR 203
           NVEA+GVDAGATDNLRRLLR+R
Sbjct: 181 NVEAAGVDAGATDNLRRLLRLR 197

[Close]

BLAST of CsaV3_2G024250 vs. NCBI nr
Match: XP_022997633.1 (uncharacterized protein LOC111492508 [Cucurbita maxima])

HSP 1 Score: 271.2 bits (692), Expect = 7.4e-69
Identity = 141/202 (69.80%), Postives = 156/202 (77.23%), Query Frame = 0


Query: 1   MEVVFIPFSADQSRGFNPQNFSPANVHGGFLNFPLPGISYNSCRQHQQPPLLPLPRRPLP 60
           ME V IPFSA++SR    +NFSPA VH G LN P P +   S R HQQPPLLPLP RP P
Sbjct: 1   MEAVLIPFSAERSRSLKSRNFSPATVHDGVLNIPPPAVPNYSHRHHQQPPLLPLPGRPFP 60

Query: 61  PSEIGATVSSRPKCMEFRDQSLTPKKSKPIKRSRGPPAAKSTVELVIVDSTNRLGPEPSH 120
           P+ +G   S RPK  + RDQSLTPKKSKPIKRSRGPPA KST E +IVDSTNRLGPEPSH
Sbjct: 61  PTAVGVPPSCRPKGTKSRDQSLTPKKSKPIKRSRGPPALKSTAEFMIVDSTNRLGPEPSH 120

Query: 121 VPKDLLTLLGLRPSVPLCESTRSWETAAEIEFSGSAYSQSPPPSSVPLPKFSLRRKVVGC 180
           VPKDL  +LGLR S P  E  RS+ET    EFSGSA+  SPPPSSVPLPKF+LRR+ V C
Sbjct: 121 VPKDLWRVLGLRSSAPPREGGRSFET----EFSGSAFGVSPPPSSVPLPKFTLRRE-VSC 180

Query: 181 NVEASGVDAGATDNLRRLLRIR 203
           NVEA+GVDAGATDNLRRLLR+R
Sbjct: 181 NVEAAGVDAGATDNLRRLLRLR 197

[Close]

BLAST of CsaV3_2G024250 vs. ExPASy TrEMBL
Match: A0A0A0LN70 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G345930 PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 2.2e-111
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MEVVFIPFSADQSRGFNPQNFSPANVHGGFLNFPLPGISYNSCRQHQQPPLLPLPRRPLP 60
           MEVVFIPFSADQSRGFNPQNFSPANVHGGFLNFPLPGISYNSCRQHQQPPLLPLPRRPLP
Sbjct: 1   MEVVFIPFSADQSRGFNPQNFSPANVHGGFLNFPLPGISYNSCRQHQQPPLLPLPRRPLP 60

Query: 61  PSEIGATVSSRPKCMEFRDQSLTPKKSKPIKRSRGPPAAKSTVELVIVDSTNRLGPEPSH 120
           PSEIGATVSSRPKCMEFRDQSLTPKKSKPIKRSRGPPAAKSTVELVIVDSTNRLGPEPSH
Sbjct: 61  PSEIGATVSSRPKCMEFRDQSLTPKKSKPIKRSRGPPAAKSTVELVIVDSTNRLGPEPSH 120

Query: 121 VPKDLLTLLGLRPSVPLCESTRSWETAAEIEFSGSAYSQSPPPSSVPLPKFSLRRKVVGC 180
           VPKDLLTLLGLRPSVPLCESTRSWETAAEIEFSGSAYSQSPPPSSVPLPKFSLRRKVVGC
Sbjct: 121 VPKDLLTLLGLRPSVPLCESTRSWETAAEIEFSGSAYSQSPPPSSVPLPKFSLRRKVVGC 180

Query: 181 NVEASGVDAGATDNLRRLLRIR 203
           NVEASGVDAGATDNLRRLLRIR
Sbjct: 181 NVEASGVDAGATDNLRRLLRIR 202

[Close]

BLAST of CsaV3_2G024250 vs. ExPASy TrEMBL
Match: A0A5A7VG22 (Sec-independent protein translocase protein TATC OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001470 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 2.3e-92
Identity = 171/202 (84.65%), Postives = 179/202 (88.61%), Query Frame = 0


Query: 1   MEVVFIPFSADQSRGFNPQNFSPANVHGGFLNFPLPGISYNSCRQHQQPPLLPLPRRPLP 60
           MEVV IPFSADQSR FNPQN SPA VH G LNFPL GI YN  R HQQPPLLPLPRRPLP
Sbjct: 1   MEVVLIPFSADQSRSFNPQNLSPATVHAGLLNFPLRGIPYNGRRHHQQPPLLPLPRRPLP 60

Query: 61  PSEIGATVSSRPKCMEFRDQSLTPKKSKPIKRSRGPPAAKSTVELVIVDSTNRLGPEPSH 120
           PSE GAT   R KC++FRDQSL PKKSKPIKRSRGPPAAKSTVELVI+DSTNRLGPEP H
Sbjct: 61  PSETGATSFFRQKCVKFRDQSLNPKKSKPIKRSRGPPAAKSTVELVIIDSTNRLGPEPCH 120

Query: 121 VPKDLLTLLGLRPSVPLCESTRSWETAAEIEFSGSAYSQSPPPSSVPLPKFSLRRKVVGC 180
           VPKDL  +LGLRPS P+C+STRSWETAAEIEFSGSA SQSPPPSSVPLPKFSLRRKVVGC
Sbjct: 121 VPKDLWRVLGLRPSAPMCKSTRSWETAAEIEFSGSACSQSPPPSSVPLPKFSLRRKVVGC 180

Query: 181 NVEASGVDAGATDNLRRLLRIR 203
           NVE +GVDAGATDNLRRLLR+R
Sbjct: 181 NVEGAGVDAGATDNLRRLLRLR 202

[Close]

BLAST of CsaV3_2G024250 vs. ExPASy TrEMBL
Match: A0A6J1KEH8 (uncharacterized protein LOC111492508 OS=Cucurbita maxima OX=3661 GN=LOC111492508 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 3.6e-69
Identity = 141/202 (69.80%), Postives = 156/202 (77.23%), Query Frame = 0


Query: 1   MEVVFIPFSADQSRGFNPQNFSPANVHGGFLNFPLPGISYNSCRQHQQPPLLPLPRRPLP 60
           ME V IPFSA++SR    +NFSPA VH G LN P P +   S R HQQPPLLPLP RP P
Sbjct: 1   MEAVLIPFSAERSRSLKSRNFSPATVHDGVLNIPPPAVPNYSHRHHQQPPLLPLPGRPFP 60

Query: 61  PSEIGATVSSRPKCMEFRDQSLTPKKSKPIKRSRGPPAAKSTVELVIVDSTNRLGPEPSH 120
           P+ +G   S RPK  + RDQSLTPKKSKPIKRSRGPPA KST E +IVDSTNRLGPEPSH
Sbjct: 61  PTAVGVPPSCRPKGTKSRDQSLTPKKSKPIKRSRGPPALKSTAEFMIVDSTNRLGPEPSH 120

Query: 121 VPKDLLTLLGLRPSVPLCESTRSWETAAEIEFSGSAYSQSPPPSSVPLPKFSLRRKVVGC 180
           VPKDL  +LGLR S P  E  RS+ET    EFSGSA+  SPPPSSVPLPKF+LRR+ V C
Sbjct: 121 VPKDLWRVLGLRSSAPPREGGRSFET----EFSGSAFGVSPPPSSVPLPKFTLRRE-VSC 180

Query: 181 NVEASGVDAGATDNLRRLLRIR 203
           NVEA+GVDAGATDNLRRLLR+R
Sbjct: 181 NVEAAGVDAGATDNLRRLLRLR 197

[Close]

BLAST of CsaV3_2G024250 vs. ExPASy TrEMBL
Match: A0A6J1HFM4 (uncharacterized protein LOC111463019 OS=Cucurbita moschata OX=3662 GN=LOC111463019 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.6e-67
Identity = 139/202 (68.81%), Postives = 155/202 (76.73%), Query Frame = 0


Query: 1   MEVVFIPFSADQSRGFNPQNFSPANVHGGFLNFPLPGISYNSCRQHQQPPLLPLPRRPLP 60
           ME V IPFSA++SR    +NF PA VH G LN P P +   S R  QQPPLLPLPRRP P
Sbjct: 1   MEGVLIPFSAERSRSLKSRNFFPATVHDGLLNVPPPAVPNYSHRLRQQPPLLPLPRRPFP 60

Query: 61  PSEIGATVSSRPKCMEFRDQSLTPKKSKPIKRSRGPPAAKSTVELVIVDSTNRLGPEPSH 120
           P+ +GA  S RPK  + RDQSLTPKKSKPIKRSRGPPA KST E +IVDSTNRLGPEPSH
Sbjct: 61  PTAVGAPPSCRPKGTKSRDQSLTPKKSKPIKRSRGPPALKSTAEFMIVDSTNRLGPEPSH 120

Query: 121 VPKDLLTLLGLRPSVPLCESTRSWETAAEIEFSGSAYSQSPPPSSVPLPKFSLRRKVVGC 180
           VPKDL  +LGLR S P  E  R +ET    EFSGSA+  SPPPSSVPLPKF+LRR+ + C
Sbjct: 121 VPKDLWRVLGLRSSAPPREGGRRFET----EFSGSAFGVSPPPSSVPLPKFTLRRE-MSC 180

Query: 181 NVEASGVDAGATDNLRRLLRIR 203
           NVEA+GVDAGATDNLRRLLR+R
Sbjct: 181 NVEAAGVDAGATDNLRRLLRLR 197

[Close]

BLAST of CsaV3_2G024250 vs. ExPASy TrEMBL
Match: A0A6J1GI76 (uncharacterized protein LOC111454434 OS=Cucurbita moschata OX=3662 GN=LOC111454434 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 1.5e-46
Identity = 115/191 (60.21%), Postives = 132/191 (69.11%), Query Frame = 0


Query: 18  PQNFSPANVHGGFLNFPLPGISYNSCRQ--HQQPPLLPLPRRPLPPSEIGATVSSRPKCM 77
           P NFSPA           P +++ S R+   +QPP  PLPRR  PPS   A  S RPK +
Sbjct: 7   PHNFSPA----------APAVTFYSHRRRHRRQPPRFPLPRRSFPPSAAEAQPSCRPKGV 66

Query: 78  EFRDQSLTPKKSKPIKRSRGPPAAKSTVELVIVDSTNRLGPEPSHVPKDLLTLLGLR--- 137
            FRDQSL PKKSK IKR R  P  + T E +IVDSTNR+GPEPSHVPKDL  +LGLR   
Sbjct: 67  RFRDQSLAPKKSKSIKRCRELP-VEMTAEALIVDSTNRMGPEPSHVPKDLCVVLGLRLPP 126

Query: 138 PSVPLCESTRSWETAAEIEFSGSAYSQSPPPSSVPLPKFSLRRKVVGCNVE-ASGVDAGA 197
           PS P  E +RS   AAEIEFSGSA++ SPPPSSVPLP F L RK + CNVE A+G+DAGA
Sbjct: 127 PSSPPREGSRSLGVAAEIEFSGSAFNVSPPPSSVPLPNFPLMRK-LNCNVEAAAGIDAGA 185

Query: 198 TDNLRRLLRIR 203
           TDNLRRLLR+R
Sbjct: 187 TDNLRRLLRLR 185

[Close]

BLAST of CsaV3_2G024250 vs. TAIR 10
Match: AT1G20070.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; Has 26 Blast hits to 26 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-07
Identity = 24/43 (55.81%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 160 SPPPSSVPLPKFSLRRKVVGCNVEASGVDAGATDNLRRLLRIR 203
           SPPPSS+P+P+FS++ K + CNVEA+G    AT+N+RR+L++R
Sbjct: 152 SPPPSSLPMPRFSIKPK-LRCNVEAAGKSDVATNNIRRVLQLR 193

[Close]

BLAST of CsaV3_2G024250 vs. TAIR 10
Match: AT3G21570.1 (unknown protein; Has 43 Blast hits to 43 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 3.1e-04
Identity = 24/59 (40.68%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 145 ETAAEIEFSGSA-YSQSPPPSSVPLPKFSLRRKVVGCNVEASGVDAGATDNLRRLLRIR 203
           E +A+  ++GS+ ++ SP PSS+PLP FS  +K     V    +D  A+ +LRRLLR++
Sbjct: 79  EVSADDIYAGSSIFAVSPAPSSLPLPSFS--KKKAKSQVVVVSIDDSASQDLRRLLRLK 135

The following BLAST results are available for this feature:

BLAST of CsaV3_2G024250 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62252.1	4.6e-111	100.00	hypothetical protein Csa_018627 [Cucumis sativus]	[more]
KAA0064835.1	4.8e-92	84.65	sec-independent protein translocase protein TATC [Cucumis melo var. makuwa]	[more]
XP_038884839.1	3.5e-79	76.85	uncharacterized protein LOC120075485 [Benincasa hispida]	[more]
XP_023546813.1	3.3e-69	70.30	proline-rich receptor-like protein kinase PERK2 [Cucurbita pepo subsp. pepo]	[more]
XP_022997633.1	7.4e-69	69.80	uncharacterized protein LOC111492508 [Cucurbita maxima]	[more]

BLAST of CsaV3_2G024250 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G024250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LN70	2.2e-111	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G345930 PE=4 SV=1	[more]
A0A5A7VG22	2.3e-92	84.65	Sec-independent protein translocase protein TATC OS=Cucumis melo var. makuwa OX=...	[more]
A0A6J1KEH8	3.6e-69	69.80	uncharacterized protein LOC111492508 OS=Cucurbita maxima OX=3661 GN=LOC111492508...	[more]
A0A6J1HFM4	2.6e-67	68.81	uncharacterized protein LOC111463019 OS=Cucurbita moschata OX=3662 GN=LOC1114630...	[more]
A0A6J1GI76	1.5e-46	60.21	uncharacterized protein LOC111454434 OS=Cucurbita moschata OX=3662 GN=LOC1114544...	[more]

BLAST of CsaV3_2G024250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20070.1	1.7e-07	55.81	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G21570.1	3.1e-04	40.68	unknown protein; Has 43 Blast hits to 43 proteins in 13 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..98
None	No IPR available	PANTHER	PTHR33670	SPLICING FACTOR, PROLINE- AND GLUTAMINE-RICH-LIKE	coord: 33..202
None	No IPR available	PANTHER	PTHR33670:SF14	SPLICING FACTOR, PROLINE- AND GLUTAMINE-RICH-LIKE	coord: 33..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G024250.1	CsaV3_2G024250.1	mRNA