CsaV3_2G018240 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G018240
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2: 15174738 .. 15175054 (-)
RNA-Seq ExpressionCsaV3_2G018240
SyntenyCsaV3_2G018240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATGGAAATGGAATGGAAATGGAACGGTGAAAGCCAAAAGAAGAAATCACAAAACTCGGGGGTTGAGTTTTCTATTCTTTAGGCCACGTGTCCACAAAATAACTGATCTCTTCTTCCGCAGCAGTTTTCCGGCGACCACCCCACGTCGACCTCCGACAACGGCGTACGGACTTCGGCCACCAATGTTTATGTGACCGCATTGATGGTCTTACTCAAGAACTCACGACTCTCCCTTACTTTCGACAACTTCAACAACGATGGAACTTGCATTCGACGGAAATATTGGCCTCGTTGTTGTTTTTGGAATGACTAA

mRNA sequence

ATGGAATGGAAATGGAATGGAAATGGAACGCAGTTTTCCGGCGACCACCCCACGTCGACCTCCGACAACGGCGTACGGACTTCGGCCACCAATGTTTATGTGACCGCATTGATGGTCTTACTCAAGAACTCACGACTCTCCCTTACTTTCGACAACTTCAACAACGATGGAACTTGCATTCGACGGAAATATTGGCCTCGTTGTTGTTTTTGGAATGACTAA

Coding sequence (CDS)

ATGGAATGGAAATGGAATGGAAATGGAACGCAGTTTTCCGGCGACCACCCCACGTCGACCTCCGACAACGGCGTACGGACTTCGGCCACCAATGTTTATGTGACCGCATTGATGGTCTTACTCAAGAACTCACGACTCTCCCTTACTTTCGACAACTTCAACAACGATGGAACTTGCATTCGACGGAAATATTGGCCTCGTTGTTGTTTTTGGAATGACTAA

Protein sequence

MEWKWNGNGTQFSGDHPTSTSDNGVRTSATNVYVTALMVLLKNSRLSLTFDNFNNDGTCIRRKYWPRCCFWND*
Homology
[Close]
BLAST of CsaV3_2G018240 vs. NCBI nr
Match: KGN62152.1 (hypothetical protein Csa_006517 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 6.1e-37
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MEWKWNGNGTQFSGDHPTSTSDNGVRTSATNVYVTALMVLLKNSRLSLTFDNFNNDGTCI 60
          MEWKWNGNGTQFSGDHPTSTSDNGVRTSATNVYVTALMVLLKNSRLSLTFDNFNNDGTCI
Sbjct: 1  MEWKWNGNGTQFSGDHPTSTSDNGVRTSATNVYVTALMVLLKNSRLSLTFDNFNNDGTCI 60

Query: 61 RRKYWPRCCFWND 74
          RRKYWPRCCFWND
Sbjct: 61 RRKYWPRCCFWND 73

[Close]
BLAST of CsaV3_2G018240 vs. ExPASy TrEMBL
Match: A0A0A0LMZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302190 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.9e-37
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MEWKWNGNGTQFSGDHPTSTSDNGVRTSATNVYVTALMVLLKNSRLSLTFDNFNNDGTCI 60
          MEWKWNGNGTQFSGDHPTSTSDNGVRTSATNVYVTALMVLLKNSRLSLTFDNFNNDGTCI
Sbjct: 1  MEWKWNGNGTQFSGDHPTSTSDNGVRTSATNVYVTALMVLLKNSRLSLTFDNFNNDGTCI 60

Query: 61 RRKYWPRCCFWND 74
          RRKYWPRCCFWND
Sbjct: 61 RRKYWPRCCFWND 73

The following BLAST results are available for this feature:
BLAST of CsaV3_2G018240 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62152.16.1e-37100.00hypothetical protein Csa_006517 [Cucumis sativus][more]
BLAST of CsaV3_2G018240 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G018240 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMZ42.9e-37100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302190 PE=4 SV=1[more]
BLAST of CsaV3_2G018240 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G018240.1CsaV3_2G018240.1mRNA