CsaV3_2G017080 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G017080
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionC2H2-type domain-containing protein
Locationchr2: 14305170 .. 14305662 (+)
RNA-Seq ExpressionCsaV3_2G017080
SyntenyCsaV3_2G017080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGAAAGTTTAAACAATGGATGACAAATCTCTTCCTTATAACCTTCGACTAAGGAAAGATCACAAGTCTTCTTCTCCAACTGAACACTCCAAAACTCATAAACATGACAGAGATTTTCAGGTTTCATTATCATTATTCTTCTTTCTTTATTCTTTATTATTGTTTGAGTTATTATTAATTGTTAATATCAAATTTAGGAAAAGGCAAGTGATGATCAAATATATGTAAGTCATTTAATTGTGGATTATCGATGTGAAAAATGTGGATGCTCTTTTGATATTGAATCCTCTCTTAGCTCACACCATTGTAAAGTAAGCTTTTTTTTTTTAGTTTTTAATTTTTTTGAAATTTTGATATATTGATAAGTTTATTATAATAATTTTTTTTAGCAGAATAAAAATGAGAGAGAGGCAATGGAAATTGAAGGACATGGAATTTTGGGAGAGAACAAATCTTTCAGAAAAAAAAGCAGGAAGGGGGTACCAAGAAGAGC

mRNA sequence

ATGGATGACAAATCTCTTCCTTATAACCTTCGACTAAGGAAAGATCACAAGTCTTCTTCTCCAACTGAACACTCCAAAACTCATAAACATGACAGAGATTTTCAGGAAAAGGCAAGTGATGATCAAATATATGTAAGTCATTTAATTGTGGATTATCGATGTGAAAAATGTGGATGCTCTTTTGATATTGAATCCTCTCTTAGCTCACACCATTGTAAAAATAAAAATGAGAGAGAGGCAATGGAAATTGAAGGACATGGAATTTTGGGAGAGAACAAATCTTTCAGAAAAAAAAGCAGGAAGGGGGTACCAAGAAGAGC

Coding sequence (CDS)

ATGGATGACAAATCTCTTCCTTATAACCTTCGACTAAGGAAAGATCACAAGTCTTCTTCTCCAACTGAACACTCCAAAACTCATAAACATGACAGAGATTTTCAGGAAAAGGCAAGTGATGATCAAATATATGTAAGTCATTTAATTGTGGATTATCGATGTGAAAAATGTGGATGCTCTTTTGATATTGAATCCTCTCTTAGCTCACACCATTGTAAAAATAAAAATGAGAGAGAGGCAATGGAAATTGAAGGACATGGAATTTTGGGAGAGAACAAATCTTTCAGAAAAAAAAGCAGGAAGGGGGTACCAAGAAGAGC

Protein sequence

MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCSFDIESSLSSHHCKNKNEREAMEIEGHGILGENKSFRKKSRKGVPRRX
Homology
BLAST of CsaV3_2G017080 vs. NCBI nr
Match: KAE8651931.1 (hypothetical protein Csa_006531, partial [Cucumis sativus])

HSP 1 Score: 216.5 bits (550), Expect = 1.1e-52
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0

Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCS 60
           MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCS
Sbjct: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCS 60

Query: 61  FDIESSLSSHHCKNKNEREAMEIEGHGILGENKSFRKKSRKGVPRR 107
           FDIESSLSSHHCKNKNEREAMEIEGHGILGENKSFRKKSRKGVPRR
Sbjct: 61  FDIESSLSSHHCKNKNEREAMEIEGHGILGENKSFRKKSRKGVPRR 106

BLAST of CsaV3_2G017080 vs. NCBI nr
Match: KAG6571418.1 (hypothetical protein SDJN03_30333, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 113.2 bits (282), Expect = 1.4e-21
Identity = 62/109 (56.88%), Postives = 81/109 (74.31%), Query Frame = 0

Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKH-DRDFQEKASDDQIYVSHLIVDYRCEKCGC 60
           MDDKS+PYNLRLRKDHK+S+ TE SK  K  +R+FQEK  ++ + +      Y C+KCGC
Sbjct: 1   MDDKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSL------YGCDKCGC 60

Query: 61  SFDIESSLSSHHCK--NKNEREAMEIEGHGILGENKSFRKKSRKGVPRR 107
           SFD++ SL SHHCK  NK+E+EAME E    LG++KS RK++RKG+P R
Sbjct: 61  SFDLQPSLRSHHCKNNNKSEKEAMENEVEEGLGKDKSLRKRTRKGIPTR 103

BLAST of CsaV3_2G017080 vs. NCBI nr
Match: XP_023511836.1 (uncharacterized protein LOC111776737 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 112.8 bits (281), Expect = 1.8e-21
Identity = 62/109 (56.88%), Postives = 81/109 (74.31%), Query Frame = 0

Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKH-DRDFQEKASDDQIYVSHLIVDYRCEKCGC 60
           MDDKS+PYNLRLRKDHK+S+ TE SK  K  +R+FQEK  ++ + +      Y C+KCGC
Sbjct: 1   MDDKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSL------YGCDKCGC 60

Query: 61  SFDIESSLSSHHCK--NKNEREAMEIEGHGILGENKSFRKKSRKGVPRR 107
           SFD++ SL SHHCK  NK+E+EAME E    LG++KS RK++RKG+P R
Sbjct: 61  SFDLQPSLRSHHCKNNNKSEKEAMENEVDEGLGKDKSLRKRTRKGIPTR 103

BLAST of CsaV3_2G017080 vs. NCBI nr
Match: KAG7011182.1 (hypothetical protein SDJN02_27980, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 111.7 bits (278), Expect = 4.0e-21
Identity = 61/109 (55.96%), Postives = 81/109 (74.31%), Query Frame = 0

Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKH-DRDFQEKASDDQIYVSHLIVDYRCEKCGC 60
           MD+KS+PYNLRLRKDHK+S+ TE SK  K  +R+FQEK  ++ + +      Y C+KCGC
Sbjct: 1   MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSL------YGCDKCGC 60

Query: 61  SFDIESSLSSHHCK--NKNEREAMEIEGHGILGENKSFRKKSRKGVPRR 107
           SFD++ SL SHHCK  NK+E+EAME E    LG++KS RK++RKG+P R
Sbjct: 61  SFDLQPSLRSHHCKNNNKSEKEAMENEVEEGLGKDKSLRKRTRKGIPTR 103

BLAST of CsaV3_2G017080 vs. NCBI nr
Match: XP_022928048.1 (uncharacterized protein LOC111434950 [Cucurbita moschata])

HSP 1 Score: 111.7 bits (278), Expect = 4.0e-21
Identity = 61/109 (55.96%), Postives = 80/109 (73.39%), Query Frame = 0

Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKH-DRDFQEKASDDQIYVSHLIVDYRCEKCGC 60
           MD+KS+PYNLRLRKDHK+S+ TE SK  K  +R+FQEK  ++ + +      Y C+KCGC
Sbjct: 1   MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSL------YGCDKCGC 60

Query: 61  SFDIESSLSSHHCK--NKNEREAMEIEGHGILGENKSFRKKSRKGVPRR 107
           SFD++ SL SHHCK  NK+EREA E E    LG++KS RK++RKG+P R
Sbjct: 61  SFDLQPSLRSHHCKSNNKSEREATENEVEEALGKDKSLRKRTRKGIPTR 103

BLAST of CsaV3_2G017080 vs. ExPASy TrEMBL
Match: A0A0A0LQ06 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G287130 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 5.5e-53
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0

Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCS 60
           MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCS
Sbjct: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCS 60

Query: 61  FDIESSLSSHHCKNKNEREAMEIEGHGILGENKSFRKKSRKGVPRR 107
           FDIESSLSSHHCKNKNEREAMEIEGHGILGENKSFRKKSRKGVPRR
Sbjct: 61  FDIESSLSSHHCKNKNEREAMEIEGHGILGENKSFRKKSRKGVPRR 106

BLAST of CsaV3_2G017080 vs. ExPASy TrEMBL
Match: A0A6J1EMR9 (uncharacterized protein LOC111434950 OS=Cucurbita moschata OX=3662 GN=LOC111434950 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.9e-21
Identity = 61/109 (55.96%), Postives = 80/109 (73.39%), Query Frame = 0

Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKH-DRDFQEKASDDQIYVSHLIVDYRCEKCGC 60
           MD+KS+PYNLRLRKDHK+S+ TE SK  K  +R+FQEK  ++ + +      Y C+KCGC
Sbjct: 1   MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSL------YGCDKCGC 60

Query: 61  SFDIESSLSSHHCK--NKNEREAMEIEGHGILGENKSFRKKSRKGVPRR 107
           SFD++ SL SHHCK  NK+EREA E E    LG++KS RK++RKG+P R
Sbjct: 61  SFDLQPSLRSHHCKSNNKSEREATENEVEEALGKDKSLRKRTRKGIPTR 103

BLAST of CsaV3_2G017080 vs. ExPASy TrEMBL
Match: A0A6J1D739 (uncharacterized protein LOC111017959 OS=Momordica charantia OX=3673 GN=LOC111017959 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.9e-17
Identity = 61/114 (53.51%), Postives = 75/114 (65.79%), Query Frame = 0

Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSK-THKHDRDFQEKASDDQIYVSHLIVDYRCEKCGC 60
           MDDKSLPYNLRLR   K+S+PTE SK   KH+RDFQEK  ++      + ++ RCEKCGC
Sbjct: 1   MDDKSLPYNLRLR---KASAPTEPSKINQKHERDFQEKGDEE------IGLEQRCEKCGC 60

Query: 61  SFDIESSLSSHHCKNKNEREAMEIEGHGI---LGEN----KSFRKKSRKGVPRR 107
            F IE SL SHHCK KN+     +E   +   L +N    KSFRK+SRKG+P R
Sbjct: 61  RFGIEISLHSHHCKCKNKMSEEGMENQVVPEMLDQNNNNKKSFRKRSRKGIPTR 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8651931.11.1e-52100.00hypothetical protein Csa_006531, partial [Cucumis sativus][more]
KAG6571418.11.4e-2156.88hypothetical protein SDJN03_30333, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023511836.11.8e-2156.88uncharacterized protein LOC111776737 [Cucurbita pepo subsp. pepo][more]
KAG7011182.14.0e-2155.96hypothetical protein SDJN02_27980, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022928048.14.0e-2155.96uncharacterized protein LOC111434950 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LQ065.5e-53100.00C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G287130 P... [more]
A0A6J1EMR91.9e-2155.96uncharacterized protein LOC111434950 OS=Cucurbita moschata OX=3662 GN=LOC1114349... [more]
A0A6J1D7392.9e-1753.51uncharacterized protein LOC111017959 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..106
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 52..79
score: 10.325359

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G017080.1CsaV3_2G017080.1mRNA