CsaV3_2G017050 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G017050
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2: 14273868 .. 14274354 (+)
RNA-Seq Expression	CsaV3_2G017050
Synteny	CsaV3_2G017050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGAGCTAAAATGGAAGAAACCGATCAATCTGTAGCTCAGCACAGAGGTTATGGAAAGGCTGCAACAGACCCACAAAGAAAAAACGGTCATAGAAAAGGAAGCTTTTCTAGTAACAAGCTTCCATTGAAAAAGGGACCCATCAGCTCAGAGAAAAGGTAGAGATTCTGAAATGGGTGTTTTTAGAAAAATTTGGTGAGAAATGGACAGGTCGTTGGGGTTTGAATGAAGAGAAGAAAATAAAAGTCCAAATCGTCAACTGGGTAAGCGATTGAGAAGTGGGAAAGTGGCCAAATTAGAGATTTCAAAGGGGAAACATGAGTAGAATGGTTAAAAGAGTGTGTTGTTATTATATAAGGAGAGTCGCCGGCCAAGTTCTCTGGTTTTCAGGCAACCGGTAATGGGTTCTGCATTATCTCTACATAAATGGTCGATTTCTCAAGGAAAAACGAAGGAGATGATTCAATTTAACAAACTTCTATGA

mRNA sequence

ATGAAGGGAGCTAAAATGGAAGAAACCGATCAATCTGTAGCTCAGCACAGAGGTTATGGAAAGGCTGCAACAGACCCACAAAGAAAAAACGAAAAATTTGGTGAGAAATGGACAGGTCGTTGGGGTTTGAATGAAGAGAAGAAAATAAAAGTCCAAATCGTCAACTGGGAGAGTCGCCGGCCAAGTTCTCTGGTTTTCAGGCAACCGGTAATGGGTTCTGCATTATCTCTACATAAATGGTCGATTTCTCAAGGAAAAACGAAGGAGATGATTCAATTTAACAAACTTCTATGA

Coding sequence (CDS)

ATGAAGGGAGCTAAAATGGAAGAAACCGATCAATCTGTAGCTCAGCACAGAGGTTATGGAAAGGCTGCAACAGACCCACAAAGAAAAAACGAAAAATTTGGTGAGAAATGGACAGGTCGTTGGGGTTTGAATGAAGAGAAGAAAATAAAAGTCCAAATCGTCAACTGGGAGAGTCGCCGGCCAAGTTCTCTGGTTTTCAGGCAACCGGTAATGGGTTCTGCATTATCTCTACATAAATGGTCGATTTCTCAAGGAAAAACGAAGGAGATGATTCAATTTAACAAACTTCTATGA

Protein sequence

MKGAKMEETDQSVAQHRGYGKAATDPQRKNEKFGEKWTGRWGLNEEKKIKVQIVNWESRRPSSLVFRQPVMGSALSLHKWSISQGKTKEMIQFNKLL*

Homology

[Close]

BLAST of CsaV3_2G017050 vs. NCBI nr
Match: KGN62028.1 (hypothetical protein Csa_006660 [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 1.7e-47
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MKGAKMEETDQSVAQHRGYGKAATDPQRKNEKFGEKWTGRWGLNEEKKIKVQIVNWESRR 60
          MKGAKMEETDQSVAQHRGYGKAATDPQRKNEKFGEKWTGRWGLNEEKKIKVQIVNWESRR
Sbjct: 1  MKGAKMEETDQSVAQHRGYGKAATDPQRKNEKFGEKWTGRWGLNEEKKIKVQIVNWESRR 60

Query: 61 PSSLVFRQPVMGSALSLHKWSISQGKTKEMIQFNKLL 98
          PSSLVFRQPVMGSALSLHKWSISQGKTKEMIQFNKLL
Sbjct: 61 PSSLVFRQPVMGSALSLHKWSISQGKTKEMIQFNKLL 97

[Close]

BLAST of CsaV3_2G017050 vs. ExPASy TrEMBL
Match: A0A0A0LJU1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287100 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 8.4e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MKGAKMEETDQSVAQHRGYGKAATDPQRKNEKFGEKWTGRWGLNEEKKIKVQIVNWESRR 60
          MKGAKMEETDQSVAQHRGYGKAATDPQRKNEKFGEKWTGRWGLNEEKKIKVQIVNWESRR
Sbjct: 1  MKGAKMEETDQSVAQHRGYGKAATDPQRKNEKFGEKWTGRWGLNEEKKIKVQIVNWESRR 60

Query: 61 PSSLVFRQPVMGSALSLHKWSISQGKTKEMIQFNKLL 98
          PSSLVFRQPVMGSALSLHKWSISQGKTKEMIQFNKLL
Sbjct: 61 PSSLVFRQPVMGSALSLHKWSISQGKTKEMIQFNKLL 97

The following BLAST results are available for this feature:

BLAST of CsaV3_2G017050 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62028.1	1.7e-47	100.00	hypothetical protein Csa_006660 [Cucumis sativus]	[more]

BLAST of CsaV3_2G017050 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G017050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJU1	8.4e-48	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287100 PE=4 SV=1	[more]

BLAST of CsaV3_2G017050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G017050.1	CsaV3_2G017050.1	mRNA