CsaV3_2G016810 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G016810
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	BHLH domain-containing protein
Location	chr2: 14091802 .. 14092813 (-)
RNA-Seq Expression	CsaV3_2G016810
Synteny	CsaV3_2G016810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACATTTAATTTAATTAATAAACACAAGAGAGAGGTTTTAGGTTTGGTCTATATATACACACAAAGACTCCCTCCTCTCCCTTCAAATCTCAATACAGAGCAAAAGAAAAAGGATCATTTCATAAACGTTCAAGAGAATCAAATCCCCAAGTCCCCAAGTCCCCAAATCCCGATGGACGATATCGACATCCTCAAATCCACACTCTCCCAATCCGACATGTCGTCCACATTCTTCCCAAACAACACCGCCCCCAATTGCACTCCTCATGTACTCCCAATAATCCCACCCCCAGCTTATTTCTCCGACTACTCCCCGCCGCCCGGAACCTCCTTATTCCAAACCACCCCAACAATAATCCCCGAAACTCCTGCGCGGCAGAGGCGGAGCGGCGTAAGTGGGGGAGGAATGGCGGCGATGAGAGAGATGATATTTAGAATAGCGGCGATGCAGCCGGTGGAGATTGATCCGGAGGCGATAAAGGCGCCGAAGCGGCGGAATGTGAGAATATCGAAAGATCCACAGAGTGTGGCGGCGAGGCACCGGCGGGAAAGGATTAGCCAGAAAATTAGGATTCTGCAGCGGCTGGTGCCGGGCGGGACGAAGATGGACACAGCGTCGATGCTGGATGAGGCGGTGCATTATGTGAAGTTTTTGAAACGGCAAGTCCAAACGCTGGAGCAGGCTGGGTTTAATTATAATAATAATAATAACAACAATAACAATTTTAATAATTTTGTTAATTCCGCGAATTTAAATTACGCTTCTGCCCTTTTCAAGGCTTGTCAAATAATGCCTGCTTCTTTGCAAATGCAGTCTTGAAAATTTATCTAAGTTTTTTTTCTTTTATCACTCTAATCTAATTTCTCTTATTATTTGAGTGTTTCTTTTCTTTTTAATTTTGTAAAGGGGAAAAGTGCTTTTTAATTTGTCTACTTTTTTATTTAAAGGGAAAATGTAGTTTAATTTTGGGTTTGATATATTATTATATTCATACTATTGTATTATTGTC

mRNA sequence

ATGGACGATATCGACATCCTCAAATCCACACTCTCCCAATCCGACATGTCGTCCACATTCTTCCCAAACAACACCGCCCCCAATTGCACTCCTCATGTACTCCCAATAATCCCACCCCCAGCTTATTTCTCCGACTACTCCCCGCCGCCCGGAACCTCCTTATTCCAAACCACCCCAACAATAATCCCCGAAACTCCTGCGCGGCAGAGGCGGAGCGGCGTAAGTGGGGGAGGAATGGCGGCGATGAGAGAGATGATATTTAGAATAGCGGCGATGCAGCCGGTGGAGATTGATCCGGAGGCGATAAAGGCGCCGAAGCGGCGGAATGTGAGAATATCGAAAGATCCACAGAGTGTGGCGGCGAGGCACCGGCGGGAAAGGATTAGCCAGAAAATTAGGATTCTGCAGCGGCTGGTGCCGGGCGGGACGAAGATGGACACAGCGTCGATGCTGGATGAGGCGGTGCATTATGTGAAGTTTTTGAAACGGCAAGTCCAAACGCTGGAGCAGGCTGGGTTTAATTATAATAATAATAATAACAACAATAACAATTTTAATAATTTTGTTAATTCCGCGAATTTAAATTACGCTTCTGCCCTTTTCAAGGCTTGTCAAATAATGCCTGCTTCTTTGCAAATGCAGTCTTGA

Coding sequence (CDS)

ATGGACGATATCGACATCCTCAAATCCACACTCTCCCAATCCGACATGTCGTCCACATTCTTCCCAAACAACACCGCCCCCAATTGCACTCCTCATGTACTCCCAATAATCCCACCCCCAGCTTATTTCTCCGACTACTCCCCGCCGCCCGGAACCTCCTTATTCCAAACCACCCCAACAATAATCCCCGAAACTCCTGCGCGGCAGAGGCGGAGCGGCGTAAGTGGGGGAGGAATGGCGGCGATGAGAGAGATGATATTTAGAATAGCGGCGATGCAGCCGGTGGAGATTGATCCGGAGGCGATAAAGGCGCCGAAGCGGCGGAATGTGAGAATATCGAAAGATCCACAGAGTGTGGCGGCGAGGCACCGGCGGGAAAGGATTAGCCAGAAAATTAGGATTCTGCAGCGGCTGGTGCCGGGCGGGACGAAGATGGACACAGCGTCGATGCTGGATGAGGCGGTGCATTATGTGAAGTTTTTGAAACGGCAAGTCCAAACGCTGGAGCAGGCTGGGTTTAATTATAATAATAATAATAACAACAATAACAATTTTAATAATTTTGTTAATTCCGCGAATTTAAATTACGCTTCTGCCCTTTTCAAGGCTTGTCAAATAATGCCTGCTTCTTTGCAAATGCAGTCTTGA

Protein sequence

MDDIDILKSTLSQSDMSSTFFPNNTAPNCTPHVLPIIPPPAYFSDYSPPPGTSLFQTTPTIIPETPARQRRSGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFNYNNNNNNNNNFNNFVNSANLNYASALFKACQIMPASLQMQS*

Homology

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BLAST of CsaV3_2G016810 vs. NCBI nr
Match: KGN62005.1 (hypothetical protein Csa_006102 [Cucumis sativus])

HSP 1 Score: 413.7 bits (1062), Expect = 9.8e-112
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MDDIDILKSTLSQSDMSSTFFPNNTAPNCTPHVLPIIPPPAYFSDYSPPPGTSLFQTTPT 60
           MDDIDILKSTLSQSDMSSTFFPNNTAPNCTPHVLPIIPPPAYFSDYSPPPGTSLFQTTPT
Sbjct: 1   MDDIDILKSTLSQSDMSSTFFPNNTAPNCTPHVLPIIPPPAYFSDYSPPPGTSLFQTTPT 60

Query: 61  IIPETPARQRRSGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVA 120
           IIPETPARQRRSGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVA
Sbjct: 61  IIPETPARQRRSGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVA 120

Query: 121 ARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFNYNNNNN 180
           ARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFNYNNNNN
Sbjct: 121 ARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFNYNNNNN 180

Query: 181 NNNNFNNFVNSANLNYASALFKACQIMPASLQMQS 216
           NNNNFNNFVNSANLNYASALFKACQIMPASLQMQS
Sbjct: 181 NNNNFNNFVNSANLNYASALFKACQIMPASLQMQS 215

[Close]

BLAST of CsaV3_2G016810 vs. NCBI nr
Match: KAA0045810.1 (transcription factor HEC2-like [Cucumis melo var. makuwa])

HSP 1 Score: 372.9 bits (956), Expect = 1.9e-99
Identity = 203/218 (93.12%), Postives = 205/218 (94.04%), Query Frame = 0


Query: 1   MDDIDILKSTLSQSDMSSTFFPNNTAPNCTPHVLPIIPPPAYFSDYSPPPGTSLFQTTPT 60
           MDDIDILKSTLS SDMSSTFFPNN      P +LP+IPPP YFSDYSPPPGTSLFQTTPT
Sbjct: 1   MDDIDILKSTLSPSDMSSTFFPNN-----CPQLLPVIPPP-YFSDYSPPPGTSLFQTTPT 60

Query: 61  IIPETPARQRRSGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVA 120
           IIPE PARQRRSGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVA
Sbjct: 61  IIPEAPARQRRSGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVA 120

Query: 121 ARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFNY---NN 180
           ARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFNY   NN
Sbjct: 121 ARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFNYNNNNN 180

Query: 181 NNNNNNNFNNFVNSANLNYASALFKACQIMPASLQMQS 216
           NNNNNNNFNNFVNSANLNYASALFKACQIMPASLQMQS
Sbjct: 181 NNNNNNNFNNFVNSANLNYASALFKACQIMPASLQMQS 212

[Close]

BLAST of CsaV3_2G016810 vs. NCBI nr
Match: XP_016902160.1 (PREDICTED: transcription factor HEC2-like [Cucumis melo])

HSP 1 Score: 297.0 bits (759), Expect = 1.3e-76
Identity = 158/171 (92.40%), Postives = 161/171 (94.15%), Query Frame = 0


Query: 1   MDDIDILKSTLSQSDMSSTFFPNNTAPNCTPHVLPIIPPPAYFSDYSPPPGTSLFQTTPT 60
           MDDIDILKSTLS SDMSSTFFPNN      P +LP+IPPP YFSDYSPPPGTSLFQTTPT
Sbjct: 1   MDDIDILKSTLSPSDMSSTFFPNN-----CPQLLPVIPPP-YFSDYSPPPGTSLFQTTPT 60

Query: 61  IIPETPARQRRSGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVA 120
           IIPE PARQRRSGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVA
Sbjct: 61  IIPEAPARQRRSGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVA 120

Query: 121 ARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQA 172
           ARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQ+
Sbjct: 121 ARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQS 165

[Close]

BLAST of CsaV3_2G016810 vs. NCBI nr
Match: KAG6605270.1 (Transcription factor HEC2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 247.3 bits (630), Expect = 1.2e-61
Identity = 151/222 (68.02%), Postives = 164/222 (73.87%), Query Frame = 0


Query: 1   MDDIDILKSTLSQSDMSSTFFPNNTAPNCTPHVLPIIPPPAYFSDYSPPPGTSLFQTTPT 60
           MDDIDILKSTLS  DMSST   NN   N + H  P+     +FSD+S P     F T   
Sbjct: 1   MDDIDILKSTLSPIDMSSTILLNN---NNSSHYSPL----PFFSDFSSPS----FHTAQP 60

Query: 61  IIPETPARQRR----SGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDP 120
           ++P    RQ+R     G  GGGMAAMREMIFRIAAMQP++IDPE IKAPKRRNVRISKDP
Sbjct: 61  VLPNQQNRQKRGCGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDP 120

Query: 121 QSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFNYN 180
           QSVAAR RRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGF+  
Sbjct: 121 QSVAARQRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNA 180

Query: 181 NNNNNNNNFNNFVNSANLNYASALFKACQI-----MPASLQM 214
           N  NNNN      N  NL+Y+SALFKACQ+     MP SLQM
Sbjct: 181 NTTNNNN------NCPNLSYSSALFKACQMPHAPSMPGSLQM 205

[Close]

BLAST of CsaV3_2G016810 vs. NCBI nr
Match: KAG7035229.1 (Transcription factor HEC2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 245.0 bits (624), Expect = 6.1e-61
Identity = 153/223 (68.61%), Postives = 165/223 (73.99%), Query Frame = 0


Query: 1   MDDIDILKSTLSQS---DMSSTFFPNNTAPNCTPHVLPIIPPPAYFSDYSPPPGTSLFQT 60
           MDDIDILKSTLS S   DMSST   NN   N + H     PP  +FSD+S P     F T
Sbjct: 1   MDDIDILKSTLSPSNSIDMSSTILLNN---NNSSH----YPPLPFFSDFSSPS----FHT 60

Query: 61  TPTIIPETPARQRR--SGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKD 120
              ++P    RQ+R   G  GGGMAAMREMIFRIAAMQP++IDPE IKAPKRRNVRISKD
Sbjct: 61  AQPVLPNQQNRQKRGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKD 120

Query: 121 PQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFNY 180
           PQSVAAR RRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGF+ 
Sbjct: 121 PQSVAARQRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHN 180

Query: 181 NNNNNNNNNFNNFVNSANLNYASALFKACQI-----MPASLQM 214
            N  NNNN      N  NL+Y+SALFKACQ+     MP SLQM
Sbjct: 181 ANTTNNNN------NCPNLSYSSALFKACQMPHAPSMPGSLQM 206

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BLAST of CsaV3_2G016810 vs. ExPASy Swiss-Prot
Match: Q9SND4 (Transcription factor HEC2 OS=Arabidopsis thaliana OX=3702 GN=HEC2 PE=1 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.6e-40
Identity = 102/186 (54.84%), Postives = 129/186 (69.35%), Query Frame = 0


Query: 1   MDDIDILKSTLSQSDMSSTFFPNNTAPNCTPHVLPIIPP----PAYFS--------DYSP 60
           MD+ DIL + + Q         +N+ PN  PH + ++      P +F+        D + 
Sbjct: 1   MDNSDILMNMMMQQMEKLPEHFSNSNPNPNPHNIMMLSESNTHPFFFNPTHSHLPFDQTM 60

Query: 61  P---PGTSLFQTTPTIIPETPARQRRSGVS-GGGMAAMREMIFRIAAMQPVEIDPEAIKA 120
           P   PG + F+  P+  P +   ++R G S    MAAMREMIFRIA MQP+ IDPE++K 
Sbjct: 61  PHHQPGLN-FRYAPS--PSSSLPEKRGGCSDNANMAAMREMIFRIAVMQPIHIDPESVKP 120

Query: 121 PKRRNVRISKDPQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQ 171
           PKR+NVRISKDPQSVAARHRRERIS++IRILQRLVPGGTKMDTASMLDEA+HYVKFLK+Q
Sbjct: 121 PKRKNVRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQ 180

[Close]

BLAST of CsaV3_2G016810 vs. ExPASy Swiss-Prot
Match: Q9FHA7 (Transcription factor HEC1 OS=Arabidopsis thaliana OX=3702 GN=HEC1 PE=1 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.0e-39
Identity = 82/96 (85.42%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 75  SGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVAARHRRERISQKIRI 134
           +G  MAAMREMIFRIA MQP+ IDPEA+K PKRRNVRISKDPQSVAARHRRERIS++IRI
Sbjct: 91  NGTNMAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVRISKDPQSVAARHRRERISERIRI 150

Query: 135 LQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQ 171
           LQRLVPGGTKMDTASMLDEA+HYVKFLK+QVQ+LE+
Sbjct: 151 LQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEE 186

[Close]

BLAST of CsaV3_2G016810 vs. ExPASy Swiss-Prot
Match: Q9LXD8 (Transcription factor HEC3 OS=Arabidopsis thaliana OX=3702 GN=HEC3 PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.5e-33
Identity = 78/127 (61.42%), Postives = 95/127 (74.80%), Query Frame = 0


Query: 42  YFSDYSPPPGTSLFQTTPTIIPETPARQRRSGVSGGGMAAMREMIFRIAAMQPVEIDPEA 101
           + S + PP  +SL  TT T++                + AM+EM+++IAAMQ V+IDP  
Sbjct: 57  FSSSHFPPLSSSL--TTTTLLSGDQEDDEDEEEPLEELGAMKEMMYKIAAMQSVDIDPAT 116

Query: 102 IKAPKRRNVRISKDPQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFL 161
           +K PKRRNVRIS DPQSVAARHRRERIS++IRILQRLVPGGTKMDTASMLDEA+ YVKFL
Sbjct: 117 VKKPKRRNVRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFL 176

Query: 162 KRQVQTL 169
           KRQ++ L
Sbjct: 177 KRQIRLL 181

[Close]

BLAST of CsaV3_2G016810 vs. ExPASy Swiss-Prot
Match: O81313 (Transcription factor IND OS=Arabidopsis thaliana OX=3702 GN=IND PE=1 SV=3)

HSP 1 Score: 127.5 bits (319), Expect = 1.8e-28
Identity = 64/91 (70.33%), Postives = 75/91 (82.42%), Query Frame = 0


Query: 79  MAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVAARHRRERISQKIRILQRL 138
           M AM+EM + IA MQPV+IDP  +  P RRNVRIS DPQ+V AR RRERIS+KIRIL+R+
Sbjct: 85  MDAMKEMQYMIAVMQPVDIDPATVPKPNRRNVRISDDPQTVVARRRRERISEKIRILKRI 144

Query: 139 VPGGTKMDTASMLDEAVHYVKFLKRQVQTLE 170
           VPGG KMDTASMLDEA+ Y KFLKRQV+ L+
Sbjct: 145 VPGGAKMDTASMLDEAIRYTKFLKRQVRILQ 175

[Close]

BLAST of CsaV3_2G016810 vs. ExPASy Swiss-Prot
Match: Q8S3D2 (Transcription factor bHLH87 OS=Arabidopsis thaliana OX=3702 GN=BHLH87 PE=1 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.0e-26
Identity = 69/137 (50.36%), Postives = 92/137 (67.15%), Query Frame = 0


Query: 79  MAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVAARHRRERISQKIRILQRL 138
           +A M+EMI+R AA +PV    E ++ PKR+NV+IS DPQ+VAAR RRERIS+KIR+LQ L
Sbjct: 242 IAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTVAARQRRERISEKIRVLQTL 301

Query: 139 VPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFNYNNNNNNNNNFNNFVNSANLNYAS 198
           VPGGTKMDTASMLDEA +Y+KFL+ QV+ LE              N    ++  NL+++S
Sbjct: 302 VPGGTKMDTASMLDEAANYLKFLRAQVKALE--------------NLRPKLDQTNLSFSS 361

Query: 199 ALFKACQIMPASLQMQS 216
           A        P+ L +Q+
Sbjct: 362 APTSFPLFHPSFLPLQN 364

[Close]

BLAST of CsaV3_2G016810 vs. ExPASy TrEMBL
Match: A0A0A0LJI7 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G285890 PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 4.8e-112
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MDDIDILKSTLSQSDMSSTFFPNNTAPNCTPHVLPIIPPPAYFSDYSPPPGTSLFQTTPT 60
           MDDIDILKSTLSQSDMSSTFFPNNTAPNCTPHVLPIIPPPAYFSDYSPPPGTSLFQTTPT
Sbjct: 1   MDDIDILKSTLSQSDMSSTFFPNNTAPNCTPHVLPIIPPPAYFSDYSPPPGTSLFQTTPT 60

Query: 61  IIPETPARQRRSGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVA 120
           IIPETPARQRRSGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVA
Sbjct: 61  IIPETPARQRRSGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVA 120

Query: 121 ARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFNYNNNNN 180
           ARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFNYNNNNN
Sbjct: 121 ARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFNYNNNNN 180

Query: 181 NNNNFNNFVNSANLNYASALFKACQIMPASLQMQS 216
           NNNNFNNFVNSANLNYASALFKACQIMPASLQMQS
Sbjct: 181 NNNNFNNFVNSANLNYASALFKACQIMPASLQMQS 215

[Close]

BLAST of CsaV3_2G016810 vs. ExPASy TrEMBL
Match: A0A5A7TRN4 (Transcription factor HEC2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G003330 PE=4 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 9.3e-100
Identity = 203/218 (93.12%), Postives = 205/218 (94.04%), Query Frame = 0


Query: 1   MDDIDILKSTLSQSDMSSTFFPNNTAPNCTPHVLPIIPPPAYFSDYSPPPGTSLFQTTPT 60
           MDDIDILKSTLS SDMSSTFFPNN      P +LP+IPPP YFSDYSPPPGTSLFQTTPT
Sbjct: 1   MDDIDILKSTLSPSDMSSTFFPNN-----CPQLLPVIPPP-YFSDYSPPPGTSLFQTTPT 60

Query: 61  IIPETPARQRRSGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVA 120
           IIPE PARQRRSGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVA
Sbjct: 61  IIPEAPARQRRSGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVA 120

Query: 121 ARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFNY---NN 180
           ARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFNY   NN
Sbjct: 121 ARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFNYNNNNN 180

Query: 181 NNNNNNNFNNFVNSANLNYASALFKACQIMPASLQMQS 216
           NNNNNNNFNNFVNSANLNYASALFKACQIMPASLQMQS
Sbjct: 181 NNNNNNNFNNFVNSANLNYASALFKACQIMPASLQMQS 212

[Close]

BLAST of CsaV3_2G016810 vs. ExPASy TrEMBL
Match: A0A1S4E2F9 (transcription factor HEC2-like OS=Cucumis melo OX=3656 GN=LOC103497414 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 6.5e-77
Identity = 158/171 (92.40%), Postives = 161/171 (94.15%), Query Frame = 0


Query: 1   MDDIDILKSTLSQSDMSSTFFPNNTAPNCTPHVLPIIPPPAYFSDYSPPPGTSLFQTTPT 60
           MDDIDILKSTLS SDMSSTFFPNN      P +LP+IPPP YFSDYSPPPGTSLFQTTPT
Sbjct: 1   MDDIDILKSTLSPSDMSSTFFPNN-----CPQLLPVIPPP-YFSDYSPPPGTSLFQTTPT 60

Query: 61  IIPETPARQRRSGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVA 120
           IIPE PARQRRSGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVA
Sbjct: 61  IIPEAPARQRRSGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVA 120

Query: 121 ARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQA 172
           ARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQ+
Sbjct: 121 ARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQS 165

[Close]

BLAST of CsaV3_2G016810 vs. ExPASy TrEMBL
Match: A0A6J1L0E1 (transcription factor HEC2-like OS=Cucurbita maxima OX=3661 GN=LOC111499900 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 3.8e-61
Identity = 151/221 (68.33%), Postives = 164/221 (74.21%), Query Frame = 0


Query: 1   MDDIDILKSTLSQS---DMSSTFFPNNTAPNCTPHVLPIIPPPAYFSDYSPPPGTSLFQT 60
           MDDIDILKSTLS S   DMSST   NN  P+ +P  LP      +FSD+S    +  F T
Sbjct: 1   MDDIDILKSTLSPSNSIDMSSTILLNNNNPHYSP--LP------FFSDFS----SLSFHT 60

Query: 61  TPTIIPETPARQRRSGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQ 120
               +P    RQ+R G  GGGMAAMREMIFRIAAMQP++IDPE IKAPKRRNVRISKDPQ
Sbjct: 61  EQPALPNHHHRQKRGG-GGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQ 120

Query: 121 SVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFNYNN 180
           SVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGF+   
Sbjct: 121 SVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNTT 180

Query: 181 NNNNNNNFNNFVNSANLNYASALFKACQI-----MPASLQM 214
           NNN         N  NL+Y+SALFKACQ+     MP SLQM
Sbjct: 181 NNN---------NCPNLSYSSALFKACQMPHAPSMPGSLQM 199

[Close]

BLAST of CsaV3_2G016810 vs. ExPASy TrEMBL
Match: A0A6J1G7Q1 (transcription factor HEC2-like OS=Cucurbita moschata OX=3662 GN=LOC111451594 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 8.5e-61
Identity = 153/227 (67.40%), Postives = 165/227 (72.69%), Query Frame = 0


Query: 1   MDDIDILKSTLSQS---DMSSTFFPNNTAPNCTPHVLPIIPPPAYFSDYSPPPGTSLFQT 60
           MDDIDILKSTLS S   DMSST   NN   N + H     PP  +FSD+S P     F T
Sbjct: 1   MDDIDILKSTLSPSNSIDMSSTILLNN---NNSSH----YPPLPFFSDFSSPS----FHT 60

Query: 61  TPTIIPETPARQRR------SGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVR 120
              ++P    RQ+R       G  GGGMAAMREMIFRIAAMQP++IDPE IKAPKRRNVR
Sbjct: 61  AQPVLPNQQNRQKRGGGGGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVR 120

Query: 121 ISKDPQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQA 180
           ISKDPQSVAAR RRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQA
Sbjct: 121 ISKDPQSVAARQRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQA 180

Query: 181 GFNYNNNNNNNNNFNNFVNSANLNYASALFKACQI-----MPASLQM 214
           GF+  N  NNNN      N  NL+Y+SALFKACQ+     MP SLQM
Sbjct: 181 GFHNANTTNNNN------NCPNLSYSSALFKACQMPHAPSMPGSLQM 210

[Close]

BLAST of CsaV3_2G016810 vs. TAIR 10
Match: AT3G50330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 166.4 bits (420), Expect = 2.5e-41
Identity = 102/186 (54.84%), Postives = 129/186 (69.35%), Query Frame = 0


Query: 1   MDDIDILKSTLSQSDMSSTFFPNNTAPNCTPHVLPIIPP----PAYFS--------DYSP 60
           MD+ DIL + + Q         +N+ PN  PH + ++      P +F+        D + 
Sbjct: 1   MDNSDILMNMMMQQMEKLPEHFSNSNPNPNPHNIMMLSESNTHPFFFNPTHSHLPFDQTM 60

Query: 61  P---PGTSLFQTTPTIIPETPARQRRSGVS-GGGMAAMREMIFRIAAMQPVEIDPEAIKA 120
           P   PG + F+  P+  P +   ++R G S    MAAMREMIFRIA MQP+ IDPE++K 
Sbjct: 61  PHHQPGLN-FRYAPS--PSSSLPEKRGGCSDNANMAAMREMIFRIAVMQPIHIDPESVKP 120

Query: 121 PKRRNVRISKDPQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQ 171
           PKR+NVRISKDPQSVAARHRRERIS++IRILQRLVPGGTKMDTASMLDEA+HYVKFLK+Q
Sbjct: 121 PKRKNVRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQ 180

[Close]

BLAST of CsaV3_2G016810 vs. TAIR 10
Match: AT5G67060.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 164.9 bits (416), Expect = 7.4e-41
Identity = 82/96 (85.42%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 75  SGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVAARHRRERISQKIRI 134
           +G  MAAMREMIFRIA MQP+ IDPEA+K PKRRNVRISKDPQSVAARHRRERIS++IRI
Sbjct: 91  NGTNMAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVRISKDPQSVAARHRRERISERIRI 150

Query: 135 LQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQ 171
           LQRLVPGGTKMDTASMLDEA+HYVKFLK+QVQ+LE+
Sbjct: 151 LQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEE 186

[Close]

BLAST of CsaV3_2G016810 vs. TAIR 10
Match: AT5G09750.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 142.5 bits (358), Expect = 3.9e-34
Identity = 78/127 (61.42%), Postives = 95/127 (74.80%), Query Frame = 0


Query: 42  YFSDYSPPPGTSLFQTTPTIIPETPARQRRSGVSGGGMAAMREMIFRIAAMQPVEIDPEA 101
           + S + PP  +SL  TT T++                + AM+EM+++IAAMQ V+IDP  
Sbjct: 57  FSSSHFPPLSSSL--TTTTLLSGDQEDDEDEEEPLEELGAMKEMMYKIAAMQSVDIDPAT 116

Query: 102 IKAPKRRNVRISKDPQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFL 161
           +K PKRRNVRIS DPQSVAARHRRERIS++IRILQRLVPGGTKMDTASMLDEA+ YVKFL
Sbjct: 117 VKKPKRRNVRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFL 176

Query: 162 KRQVQTL 169
           KRQ++ L
Sbjct: 177 KRQIRLL 181

[Close]

BLAST of CsaV3_2G016810 vs. TAIR 10
Match: AT4G00120.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 127.5 bits (319), Expect = 1.3e-29
Identity = 64/91 (70.33%), Postives = 75/91 (82.42%), Query Frame = 0


Query: 79  MAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVAARHRRERISQKIRILQRL 138
           M AM+EM + IA MQPV+IDP  +  P RRNVRIS DPQ+V AR RRERIS+KIRIL+R+
Sbjct: 85  MDAMKEMQYMIAVMQPVDIDPATVPKPNRRNVRISDDPQTVVARRRRERISEKIRILKRI 144

Query: 139 VPGGTKMDTASMLDEAVHYVKFLKRQVQTLE 170
           VPGG KMDTASMLDEA+ Y KFLKRQV+ L+
Sbjct: 145 VPGGAKMDTASMLDEAIRYTKFLKRQVRILQ 175

[Close]

BLAST of CsaV3_2G016810 vs. TAIR 10
Match: AT3G21330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 119.4 bits (298), Expect = 3.6e-27
Identity = 69/137 (50.36%), Postives = 92/137 (67.15%), Query Frame = 0


Query: 79  MAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVAARHRRERISQKIRILQRL 138
           +A M+EMI+R AA +PV    E ++ PKR+NV+IS DPQ+VAAR RRERIS+KIR+LQ L
Sbjct: 242 IAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTVAARQRRERISEKIRVLQTL 301

Query: 139 VPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFNYNNNNNNNNNFNNFVNSANLNYAS 198
           VPGGTKMDTASMLDEA +Y+KFL+ QV+ LE              N    ++  NL+++S
Sbjct: 302 VPGGTKMDTASMLDEAANYLKFLRAQVKALE--------------NLRPKLDQTNLSFSS 361

Query: 199 ALFKACQIMPASLQMQS 216
           A        P+ L +Q+
Sbjct: 362 APTSFPLFHPSFLPLQN 364

The following BLAST results are available for this feature:

BLAST of CsaV3_2G016810 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62005.1	9.8e-112	100.00	hypothetical protein Csa_006102 [Cucumis sativus]	[more]
KAA0045810.1	1.9e-99	93.12	transcription factor HEC2-like [Cucumis melo var. makuwa]	[more]
XP_016902160.1	1.3e-76	92.40	PREDICTED: transcription factor HEC2-like [Cucumis melo]	[more]
KAG6605270.1	1.2e-61	68.02	Transcription factor HEC2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7035229.1	6.1e-61	68.61	Transcription factor HEC2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CsaV3_2G016810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SND4	3.6e-40	54.84	Transcription factor HEC2 OS=Arabidopsis thaliana OX=3702 GN=HEC2 PE=1 SV=1	[more]
Q9FHA7	1.0e-39	85.42	Transcription factor HEC1 OS=Arabidopsis thaliana OX=3702 GN=HEC1 PE=1 SV=1	[more]
Q9LXD8	5.5e-33	61.42	Transcription factor HEC3 OS=Arabidopsis thaliana OX=3702 GN=HEC3 PE=1 SV=1	[more]
O81313	1.8e-28	70.33	Transcription factor IND OS=Arabidopsis thaliana OX=3702 GN=IND PE=1 SV=3	[more]
Q8S3D2	5.0e-26	50.36	Transcription factor bHLH87 OS=Arabidopsis thaliana OX=3702 GN=BHLH87 PE=1 SV=1	[more]

BLAST of CsaV3_2G016810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJI7	4.8e-112	100.00	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G285890 PE=4 S...	[more]
A0A5A7TRN4	9.3e-100	93.12	Transcription factor HEC2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S4E2F9	6.5e-77	92.40	transcription factor HEC2-like OS=Cucumis melo OX=3656 GN=LOC103497414 PE=4 SV=1	[more]
A0A6J1L0E1	3.8e-61	68.33	transcription factor HEC2-like OS=Cucurbita maxima OX=3661 GN=LOC111499900 PE=4 ...	[more]
A0A6J1G7Q1	8.5e-61	67.40	transcription factor HEC2-like OS=Cucurbita moschata OX=3662 GN=LOC111451594 PE=...	[more]

BLAST of CsaV3_2G016810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G50330.1	2.5e-41	54.84	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G67060.1	7.4e-41	85.42	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G09750.1	3.9e-34	61.42	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G00120.1	1.3e-29	70.33	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G21330.1	3.6e-27	50.36	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 151..171
None	No IPR available	PANTHER	PTHR45914	TRANSCRIPTION FACTOR HEC3-RELATED	coord: 73..213
None	No IPR available	PANTHER	PTHR45914:SF29	BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN	coord: 73..213
None	No IPR available	CDD	cd11454	bHLH_AtIND_like	coord: 113..169 e-value: 2.28907E-37 score: 122.886
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 118..167 e-value: 2.1E-13 score: 60.6
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 121..161 e-value: 8.0E-7 score: 29.0
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 112..161 score: 14.938512
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 111..187 e-value: 9.4E-13 score: 50.1
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 116..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G016810.1	CsaV3_2G016810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046983	protein dimerization activity